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2024-01-10gnu: Fix patch location.Ricardo Wurmus
This is a follow-up to commit db7488a7fbd829d25b0b5c5e53b1c680b67832b1. * gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix. Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb
2024-01-10gnu: openjdk9: Simplify.Ricardo Wurmus
* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN. [arguments]: Delete trailing #T from build phases. Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100
2024-01-10gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’.Ricardo Wurmus
Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk9)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55
2024-01-10gnu: python-distributed: Disable breaking test.Ricardo Wurmus
This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac
2024-01-10gnu: Add r-jaspar2020.nafkhamdc
* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060
2024-01-10gnu: Add r-dsb.nafkhamdc
* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd
2024-01-10gnu: r-signac: Update to 1.12.0-1.8ecdde2.nafkhamdc
* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2. Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317
2024-01-10gnu: Add r-escape.nafkhamdc
* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc
2024-01-10gnu: Add python-telomerecat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c
2024-01-10gnu: Add python-parabam.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b
2024-01-10gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8
2024-01-10gnu: mesa: Fix cross-compilation.Zheng Junjie
* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: yaml-cpp: Update to 0.8.0.Zheng Junjie
* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-10gnu: Add cl-stripe.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7
2024-01-10gnu: nyxt: Update to 3.11.0.Andre A. Gomes
* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-01-10gnu: cl-prompter: Update to 0.1.1-0.7890ed5.Andre A. Gomes
* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8
2024-01-09Authorize Oleg (Sharlatan)'s key.Maxim Cournoyer
* .guix-authorizations (sharlatan): Register PGP key fingerprint. Change-Id: I0d20e50a37971237721964852a404c5cf136f0be
2024-01-09tests: telephony: Fix typo.Maxim Cournoyer
* gnu/tests/telephony.scm: Fix typo. Series-to: 65371@debbugs.gnu.org Series-postfix: telephony-team Series-version: 2 Change-Id: I3eb048b8cdd1335c45ffb61b08425a18a2e7a4b2
2024-01-09tests: telephony: Fix VPATH builds.Wojtek Kosior
* gnu/tests/telephony.scm (%jami-account-content-sexp): New variable. Compute its value with `read` instead of using `include`. * gnu/tests/data/jami-dummy-account.dat (%jami-account-content-sexp): Remove variable. Make the file contain just the S-expression. Change-Id: I8d37aaf7b739f5f39715bfb8a9b8c9536385fd09 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2024-01-09gnu: jami-docs: Update to 0.0.0-2.a48997d.Maxim Cournoyer
* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d. Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e
2024-01-09gnu: jami: Update to 20231222.2.Maxim Cournoyer
* gnu/packages/jami.scm (%jami-version): Rename to... (%jami-nightly-version): ... this. Update to 20231222.2. (%jami-daemon-commit): New variable. (%jami-sources): Delete variable. (libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit. [source]: Fetch from git. Apply libjami-ac-config-files.patch. [arguments] <make-flags>: Skip ut_media_player test. <phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout phases. [inputs]: Replace dbus-c++ with sdbus-c++. Add dhtnet. Replace libgit2 with libgit2-1.6. (jami): Set version to %jami-nightly-version. [source]: Fetch from git. Apply new jami-qml-tests-discovery.patch, jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch patches. [arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF. <phases>: Delete change-directory/maybe. Adjust check phase. Add fake-x11-environment, copy-3rdparty-source-dependencies and disable-problematic-tests phases. [inputs]: Add md4c and tidy-html. * gnu/packages/patches/jami-qml-tests-discovery.patch: New file. * gnu/packages/patches/libjami-ac-config-files.patch: Likewise. * gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise. * gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise. * gnu/packages/patches/jami-libjami-headers-search.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch. Series-changes: 2 - Update Jami to latest nightly version (20231222.2) Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae
2024-01-09gnu: Add sortfilterproxymodel.Maxim Cournoyer
* gnu/packages/jami.scm (sortfilterproxymodel): New variable. Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287
2024-01-09gnu: ffmpeg-jami: Relocate to (gnu packages video).Maxim Cournoyer
To avoid Guile module dependency cycles, inherited packages must be defined in the same module. Use this opportunity to simplify the patches applying mechanism, versioning custom patches the same as for other packages. * gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file. * gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure. (%ffmpeg-default-configure-flags): Delete variable. (ffmpeg-compose-configure-flags): Delete procedure. (ffmpeg-jami): Move to... * gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and repatriate configure flags. Change-Id: Id374fae18240cd76b224915d80b61422635ccb77
2024-01-09gnu: ffmpeg-jami: Update configure flags.Maxim Cournoyer
* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags. Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8
2024-01-09gnu: pjproject-jami: Update and relocate.Maxim Cournoyer
* gnu/packages/jami.scm (pjproject-jami): Move to... * gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest commit. [arguments]: Use same configure flags as done in Jami/DhtNet projects. Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837
2024-01-09gnu: Add dhtnet.Maxim Cournoyer
* gnu/packages/networking.scm (dhtnet): New variable. Change-Id: I91cc3541f476c8614be35b1ae7cb1740690f685a
2024-01-09gnu: opendht: Update to 3.1.7.Maxim Cournoyer
* gnu/packages/networking.scm (opendht): Update to 3.1.7. [arguments]: Add a new relax-test-timeouts phase. Change-Id: Ida7fe021599e9c469e49f6540a908e80b7264241
2024-01-09gnu: msgpack: Deprecate with msgpack-c.Maxim Cournoyer
* gnu/packages/serialization.scm (msgpack-c): New variable. (msgpack-cxx): New variable. (msgpack): Rename to... (msgpack-3): ... this, and inherit from msgpack-c. * gnu/packages/vim.scm (eovim) [arguments]: Add help-cmake-find-msgpack-c phase. [inputs]: Replace msgpack with msgpack-c. * gnu/packages/terminals.scm (tmate) [inputs]: Replace msgpack with msgpack-3. * gnu/packages/networking.scm (opendht) [propagated-inputs]: Replace msgpack with msgpack-cxx. * gnu/packages/chemistry.scm (mmtf-cpp) [propagated-inputs]: Likewise.
2024-01-09gnu: libnatpmp: Update to 20230423-0.6a850fd.Maxim Cournoyer
* gnu/packages/networking.scm (libnatpmp): Update to 20230423-0.6a850fd. [source]: Fetch from git. [build-system]: Use cmake-build-system. [arguments]: Add patch-build-system and fix-version phases. Reinstate configure and check phase, but set #:tests? to #f. New #:configure-flags argument. [native-inputs]: Add which.
2024-01-09gnu: restinio: Update to 0.7.1.Maxim Cournoyer
* gnu/packages/networking.scm (restinio): Update to 0.7.1. [arguments] <configure-flags>: Remove RESTINIO_FIND_DEPS, RESTINIO_USE_EXTERNAL_HTTP_PARSER and RESTINIO_USE_EXTERNAL_SOBJECTIZER configure flags. Add -DRESTINIO_DEP_LLHTTP=system, -DRESTINIO_DEP_FMT=system, -DRESTINIO_DEP_EXPECTED_LITE=system and -DRESTINIO_WITH_SOBJECTIZER=OFF. <phases>: Add use-system-catch2. [native-inputs]: Remove clara. Replace catch2 with catch2-3. [propagated-inputs]: Replace http-parser with llhttp. (restinio-0.6): New variable. (opendht) [propagated-inputs]: Replace restinio with restinio-0.6. Change-Id: Id69fde5e2c476d7e44b8dd6e065c489314707c31
2024-01-09gnu: Add xdiff.Maxim Cournoyer
* gnu/packages/version-control.scm (xdiff): New variable.
2024-01-09gnu: Add llhttp.Maxim Cournoyer
* gnu/packages/web.scm (llhttp): New variable. Change-Id: I3c0475ff6d86a16f51d8870577808ce97ee66a92
2024-01-09gnu: Add expected-lite.Maxim Cournoyer
* gnu/packages/cpp.scm (expected-lite): New variable. Change-Id: I5a21dd631e1f2a3c97b920efcdca69f2537b42da
2024-01-09gnu: catch2-3: Update to 3.5.1.Maxim Cournoyer
* gnu/packages/check.scm (catch2-3.3): Rename to... (catch2-3): ... this. Update to 3.5.1. * gnu/packages/logging.scm (spdlog) [native-inputs]: Rename catch2-3.3 to catch2-3. * gnu/packages/potassco.scm (clingo) [inputs]: Likewise. Change-Id: Ied7724597ff4c6371dc4fedc10452ae870d23933
2024-01-09gnu: asio: Update to 1.28.0.Maxim Cournoyer
* gnu/packages/networking.scm (asio): Update to 1.28.0. Change-Id: I517fb9c6c52c5b5e5c41c5760c06eca6750d3765
2024-01-09gnu: libnatpmp: Update home page.Maxim Cournoyer
* gnu/packages/networking.scm (libnatpmp) [home-page]: Update.
2024-01-09gnu: libnatpmp: Use gexps and simplify.Maxim Cournoyer
* gnu/packages/networking.scm (libnatpmp) [arguments]: Use gexps. Use gexp variables and cc-for-target in make flags.
2024-01-09gnu: emacs-repology: Update to 1.2.4.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-repology): Update to 1.2.4. Change-Id: I72b0801ba732a4f34a2891f04d3d1b62674a1bd3
2024-01-09gnu: linux-libre 4.14: Update to 4.14.335.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.335. (linux-libre-4.14-pristine-source, deblob-scripts-4.14): Update hashes. Change-Id: I071427a52f188d599f28703374f5b7c42314777c Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-09gnu: linux-libre 4.19: Update to 4.19.304.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.304. (linux-libre-4.19-pristine-source, deblob-scripts-4.19): Update hashes. Change-Id: I14f228aa3b4a57417d7f8c392dc647709f599fac Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-09gnu: linux-libre 5.4: Update to 5.4.266.Wilko Meyer
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.266. (linux-libre-5.4-pristine-source, deblob-scripts-5.4): Update hashes. Change-Id: Ia1578dc94d3172735e5765ee90c46f865412810a Signed-off-by: Leo Famulari <leo@famulari.name>
2024-01-09news: Add entry for the new '--max-layers=N' option.Oleg Pykhalov
* etc/news.scm: Add entry. Change-Id: I286c04fd2cef820007606d1092ab45be4466fb19
2024-01-09gnu: Add python-ripser.Troy Figiel
* gnu/packages/machine-learning.scm (python-ripser): New variable. Change-Id: I21b42e555a5017e68cf43a6eaa19d991db36723d Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: Add python-persim.Troy Figiel
* gnu/packages/machine-learning.scm (python-persim): New variable. Change-Id: I914071a90b4555d7d1218ce83337d49298effb01 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: Add python-hopcroftkarp.Troy Figiel
* gnu/packages/machine-learning.scm (python-hopcroftkarp): New variable. Change-Id: I444f0371526d7a69d31363c228d5f7818bcf60dd Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: Add python-multimethod.Troy Figiel
* gnu/packages/python-xyz.scm (python-multimethod): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: Add python-pyreadstat.Troy Figiel
* gnu/packages/patches/python-pyreadstat-link-libiconv.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/statistics.scm (python-pyreadstat): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Change-Id: I361df91487412e4bfd26fb728a6999752e6343e5
2024-01-09gnu: python-h5py: Reformat with guix style.Troy Figiel
* gnu/packages/python-xyz.scm (python-h5py): Reformat with guix style. Change-Id: I9c8fabcb8a438909ff70a2c98c9e01b3a82079f3 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: python-h5py: Enable tests.Troy Figiel
* gnu/packages/python-xyz.scm (python-h5py)[native-inputs]: Add python-ipython and python-pytest. Change-Id: Ia1cae8bce802805c9d9b38a3bf515423f9b719b4 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2024-01-09gnu: Add python-portend.Troy Figiel
* gnu/packages/python-web.scm (python-portend): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
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