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2019-05-29gnu: Use make-linux-libre-headers.Carl Dong
* gnu/packages/linux.scm (make-linux-libre-headers): New variable. (linux-libre): Rename to... (linux-libre-5.1): ...this. (linux-libre-headers): Rename to... (linux-libre-headers-4.14.67): ...this. (linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers. (linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19, %linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15, linux-libre-headers-4.15, linux-libre-headers-4.14): New variables. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: cross-base: Allow non-default linux-headers.Carl Dong
* gnu/packages/cross-base.scm (cross-kernel-headers): Add LINUX-HEADERS optional argument. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add basic support for riscv64-linux-gnu targets.Carl Dong
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "riscv64-linux". * gnu/packages/linux.scm (system->linux-architecture): Add "riscv" prefix. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add childsplay.Nicolas Goaziou
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29installer: Fix wifi menu crash with hidden SSIDs.Mathieu Othacehe
This fixes https://issues.guix.gnu.org/issue/35622. * gnu/installer/connman.scm (<service>): Mention that name may be false. * gnu/installer/newt/wifi.scm (wifi-services): Filter out wifi services without name. Co-authored by: Pierre Neidhardt <mail@ambrevar.xyz>
2019-05-29gnu: awscli: Add missing input.Ricardo Wurmus
Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff.
2019-05-29gnu: r-scran: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29gnu: r-scater: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29gnu: r-sva: Update to 3.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29gnu: r-genomicfeatures: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29gnu: r-edger: Update to 3.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29gnu: r-variantannotation: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-28import: cran: Ignore invalid packages from the system requirements.Ricardo Wurmus
* guix/import/cran.scm (description->package): Filter invalid packages from the list of system requirements.
2019-05-28gnu: r-atacseqqc: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28gnu: r-icobra: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28gnu: r-chippeakanno: Update to 3.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28gnu: r-geosphere: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28gnu: r-ggfortify: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28gnu: r-wgcna: Update to 1.68.Ricardo Wurmus
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28gnu: r-bookdown: Update to 0.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.11. [propagated-inputs]: Add ghc-pandoc; remove r-yaml.
2019-05-28gnu: r-upsetr: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
2019-05-28gnu: r-epi: Update to 2.37.Ricardo Wurmus
* gnu/packages/cran.scm (r-epi): Update to 2.37.
2019-05-28gnu: r-etm: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
2019-05-28gnu: r-cmprsk: Update to 2.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
2019-05-28gnu: r-ks: Update to 1.11.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-ks): Update to 1.11.5.
2019-05-28gnu: r-bayesplot: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.0. [propagated-inputs]: Add r-glue, r-tibble, and r-tidyselect.
2019-05-28gnu: r-refgenome: Update to 1.7.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-refgenome): Update to 1.7.7.
2019-05-28gnu: r-snakecase: Update to 0.11.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-snakecase): Update to 0.11.0.
2019-05-28gnu: r-openxlsx: Update to 4.1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-openxlsx): Update to 4.1.0.1.
2019-05-28gnu: r-pillar: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.4.1.
2019-05-28gnu: r-tsp: Update to 1.1-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.1-7.
2019-05-28gnu: r-jomo: Update to 2.6-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): Update to 2.6-8.
2019-05-28gnu: r-ksamples: Update to 1.2-9.Ricardo Wurmus
* gnu/packages/cran.scm (r-ksamples): Update to 1.2-9.
2019-05-28gnu: r-lpsolve: Update to 5.6.13.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.13.1.
2019-05-28gnu: r-car: Update to 3.0-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-car): Update to 3.0-3.
2019-05-28gnu: r-fpc: Update to 2.2-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.2-1. [propagated-inputs]: Remove r-trimcluster.
2019-05-28gnu: r-prabclus: Update to 2.2-7.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-prabclus): Update to 2.2-7.1.
2019-05-28gnu: r-zoo: Update to 1.8-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-6.
2019-05-28gnu: r-rmarkdown: Update to 1.13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.13. [propagated-inputs]: Add r-xfun.
2019-05-28gnu: r-evaluate: Update to 0.14.Ricardo Wurmus
* gnu/packages/statistics.scm (r-evaluate): Update to 0.14.
2019-05-28self: Fix unquoting.Ricardo Wurmus
This is a follow-up to commit dfc69e4b6d4bbc41a4d37b3cc6ea12adb34aaafa. * guix/self.scm (whole-package): Unquote %storedir in the daemon wrapper.
2019-05-28gnu: python-attrs: Update to 19.1.0.h.nasajpour
* gnu/packages/python-xyz.scm (python-attrs): Update to 19.1.0. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28gnu: python-flask: Update to 1.0.3.h.nasajpour
* gnu/packages/python-web.scm (python-flask): Update to 1.0.3. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-28gnu: d-feet: Fix missing input and update to 0.3.14.Pierre Neidhardt
* gnu/packages/gnome.scm (d-feet): Update to 0.3.14. [inputs]: Add hicolor-icon-theme since d-feet won't list anything without it.
2019-05-28gnu: guix: Update to 35d1354.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 35d1354.
2019-05-27gnu: emacs-relint: Update to 1.8.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-relint): Update to 1.8.
2019-05-27gnu: emacs-xr: Update to 1.12.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-xr): Update to 1.12.
2019-05-27publish: Display the compression method and level in use.Ludovic Courtès
* guix/scripts/publish.scm (guix-publish): Use 'info' instead of 'format' for the initial message. When COMPRESSION is true, display the method and level in use.
2019-05-27lzlib: 'lzread!' never returns more than it was asked for.Ludovic Courtès
Fixes a bug whereby 'lzread!' could return more than COUNT. * guix/lzlib.scm (lzread!): Rewrite in a semi-functional style.
2019-05-27gnu: guix: Add dependency on lzlib.Ludovic Courtès
* gnu/packages/package-management.scm (guix)[inputs]: Add LZLIB.
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