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2024-03-16gnu: freeipmi: Update to 1.6.14.Andy Tai
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.6.14. Change-Id: I4c729baaf2a45391f95b6f96441a96d2b0f58f40 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-16gnu: guix-data-service: Update to 0.0.1-46.b4583bb.Christopher Baines
* gnu/packages/web.scm (guix-data-service): Update to 0.0.1-46.b4583bb. Change-Id: Iad913c9e7abc43855e8b7964e7753438df6e2300
2024-03-16gnu: bffe: Update to 0-5.bdfaab9.Christopher Baines
* gnu/packages/package-management.scm (bffe): Update to 0-5.bdfaab9. Change-Id: I7483026b61971e6420eab5257f0ef8afd54d032d
2024-03-16gnu: guix-build-coordinator: Update to 0-99.d802b81.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-99.d802b81. Change-Id: I82067857ed358c0895162b4f2fb7a775ede12e7d
2024-03-15gnu: go-github-com-bwesterb-go-ristretto: Move to golang-crypto.Sharlatan Hellseher
* gnu/packages/golang.scm (go-github-com-bwesterb-go-ristretto): Move from here ... * gnu/packages/golang-crypto.scm: ... to here. Change-Id: Ia028e4c5ccceaec3f0ceb828a147eff72cf6a20f
2024-03-15gnu: go-github-com-beorn7-perks-quantile: Move to golang-xyz.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile): Move from here ... * gnu/packages/golang-xyz.scm: ... to here. Change-Id: I09a2080b78fd3273af75cbbbb49718bb8eec86e5
2024-03-15gnu: kubo: Unbundle more packages.Sharlatan Hellseher
* gnu/packages/ipfs.scm (kubo) [snippet]: Remove more available vendor packages. [inputs]: Add go-github-com-benbjohnson-clock and go-github-com-blang-semver-v4. Remove go-github-com-cheggaaa-pb-v3, fail over to vendor package explicitly as v3 is not required. Change-Id: I8317ea656120b034a98d180278b928f0744f5fbb
2024-03-15gnu: go-github-com-beorn7-perks-quantile: Fix indentation.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile): Fix indentation. Change-Id: Id159b4314fc25ecebc0737221995823e28045626
2024-03-15gnu: go-github-com-beorn7-perks-quantile: Update to 1.0.1.Sharlatan Hellseher
* gnu/packages/syncthing.scm (go-github-com-beorn7-perks-quantile): Update to 1.0.1. Change-Id: Ie8c864dbc15b3aef3e4575337b940b625d6f9bbf
2024-03-15gnu: kubo: Sort inputs alphabetically.Sharlatan Hellseher
* gnu/packages/ipfs.scm (kudo) [inputs]: Sort alphabetically to ease maintenance. Change-Id: Icb95464b5b8cf7d6e26285628198cfcd5c90e695
2024-03-15gnu: Add go-github-com-blang-semver-v4.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver-v4): New variable. Change-Id: I87132b1b727b7e6ef4d46bb08dc5ad509db4e2e4
2024-03-15gnu: go-github-com-blang-semver: Fix indentation.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver): Fix indentation. Change-Id: I9b5e792f2ef859ad7a9d799ba1e369f96e53294b
2024-03-15gnu: go-github-com-blang-semver: Update to 3.8.0.Sharlatan Hellseher
* gnu/packages/golang-xyz.scm (go-github-com-blang-semver): Update to 3.8.0. Change-Id: I5f1eec936236e4f8984d6aabbab9a9ce99e291a3
2024-03-15gnu: guile-scheme-json-rpc: Update to 0.4.5a.Ilya Chernyshov
Shift some inputs requiring during runtime. * gnu/packages/guile-xyz.scm (guile-scheme-json-rpc): Update to 0.4.5a. [inputs]: Remove guile-srfi-145 and guile-srfi-180. [propagated-inputs]: Add guile-srfi-145 and guile-srfi-180. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com> Change-Id: If1c6ffaf6269c36ec857fd6f0aec444869468d24
2024-03-15gnu: r-clusterprofiler: Update to 4.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.10.1. Change-Id: I05b41c27d1e1ac8b2887845df5a4a75d45513929
2024-03-15gnu: r-zlibbioc: Update to 1.48.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zlibbioc): Update to 1.48.2. [native-inputs]: Add r-knitr. Change-Id: Iee1c599473d30532660eb3770cf471ff979530dd
2024-03-15gnu: r-stringdb: Update to 2.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-stringdb): Update to 2.14.3. [propagated-inputs]: Remove r-rcurl; add r-httr. Change-Id: Id46873bee69cdd1047002db3505ff5420097e9e9
2024-03-15gnu: r-gsva: Update to 1.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gsva): Update to 1.50.1. Change-Id: Ib298992cb9ea4615fe3888e799c332e778a7b5be
2024-03-15gnu: r-genomicfeatures: Update to 1.54.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.54.4. [propagated-inputs]: Remove r-rcurl; add r-httr and r-rjson. Change-Id: Iaed5177d04bc1c292dfad607f82401f45cfd02bc
2024-03-15gnu: r-genomeinfodb: Update to 1.38.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.7. [propagated-inputs]: Remove r-rcurl. Change-Id: Ifc265a49ed946f3548ff279b930a8346c42025a8
2024-03-15gnu: r-deseq2: Update to 1.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deseq2): Update to 1.42.1. Change-Id: Ida0b7ad662c44b2b12af487bb6aa8364874ce3da
2024-03-15gnu: r-biostrings: Update to 2.70.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.70.3. Change-Id: I4a921a148d9f54be13967ed0e3092353a683f20f
2024-03-15gnu: r-coregx: Update to 2.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-coregx): Update to 2.6.1. Change-Id: Icb0eb5a7697811f4272cda3d42d3c428bb59bd23
2024-03-15gnu: r-asics: Update to 2.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asics): Update to 2.18.1. Change-Id: I760771fd8fe57984ae1d0c96b72cb63562a1b43e
2024-03-15doc: build: Update paths to style sheets.Luis Felipe
The Guix website style sheets are now organized in themes. This change makes the documentation builder use the resources provided by a theme called "initial" (See https://issues.guix.gnu.org/69783). * doc/build.scm (syntax-highlighted-html): Update path to CSS. (html-manual-indexes): Likewise. (stylized-html): Likewise, and update path to language picker image. Change-Id: Ib2d51fcfdec42ad827add1ead1cfee4c9c4e65b7 Signed-off-by: Florian Pelz <pelzflorian@pelzflorian.de>
2024-03-15gnu: alacritty: Fix loading of libxkbcommon-x11.so.Clément Lassieur
* gnu/packages/terminals.scm (alacritty)[arguments]: Handle libxkbcommon-x11.so in the ‘add-absolute-library-references’ phase. This fixes this error: thread 'main' panicked at /tmp/guix-build-alacritty-0.13.1.drv-0/source/guix-vendor/rust-xkbcommon-dl-0.4.1.tar.gz/src/x11.rs:59:28: Library libxkbcommon-x11.so could not be loaded. note: run with `RUST_BACKTRACE=1` environment variable to display a backtrace Change-Id: Ifbf19b4962bc3d9eeba6acdf32ca66b0c662f493 Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2024-03-15gnu: python-pycurl: Disable one failing test.Sharlatan Hellseher
* gnu/packages/python-web.com (python-pycurl) [arguments] <#:test-flags>: Disable one more failing test which occurs on CI with CPU thread count more than 16. Change-Id: Ie772a7f096357b541cc8baa2349a524f05500e52
2024-03-15Revert "gnu: linux-libre-documentation: Fix compilation."Leo Famulari
This bug was fixed upstream in 6.7.6. This reverts commit b6f82b9ef1a3d51a39995598eab9f793656e9123. Change-Id: Ia756a62b29ad1f342b0e7430a0cb88cc140974eb
2024-03-15gnu: linux-libre 4.19: Update to 4.19.309.Leo Famulari
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.309. (linux-libre-4.19-pristine-source): Update hash. Change-Id: If579a8179ded35cb4269e733bd96ee6f7c5d5360
2024-03-15gnu: linux-libre 5.4: Update to 5.4.271.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.271. (linux-libre-5.4-pristine-source): Update hash. Change-Id: Iaf7277f1f4ec3f106b8f0b82aef5a8be953972bd
2024-03-15gnu: linux-libre 5.10: Update to 5.10.212.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.10-version): Update to 5.10.212. (linux-libre-5.10-pristine-source): Update hash. Change-Id: I620729ec22cd67bbe22dc808ba6b4d74d2c0479d
2024-03-15gnu: linux-libre 5.15: Update to 5.15.151.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.15-version): Update to 5.15.151. (linux-libre-5.15-pristine-source): Update hash. Change-Id: I83ddffad4f1ce05723faa5d243e8345b21e39edb
2024-03-15gnu: linux-libre 6.1: Update to 6.1.81.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.81. (linux-libre-6.1-pristine-source, deblob-scripts-6.1): Update hashes. Change-Id: Iaec9f01a190d67bcab490c318456241ea8eabf22
2024-03-15gnu: linux-libre 6.6: Update to 6.6.21.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.21. (linux-libre-6.6-pristine-source): Update hash. Change-Id: Ic2f197add55f89196010c32957e10d3683cb8c01
2024-03-15gnu: linux-libre: Update to 6.7.9.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.7-version): Update to 6.7.9. (linux-libre-6.7-pristine-source): Update hash. Change-Id: I9d3e3907623b17f1a47b78ea00e9b7a5cf428ff6
2024-03-14gnu: python-pycurl: Enable tests.Sharlatan Hellseher
* gnu/packages/python-web.scm (python-pycurl): Enable most of the tests. [build-system]: Swap to pyproject-build-system. [arguments] <#:tests?>: Enable them. <#:test-arguments>: Disable some failing and hanging tests. [native-inputs]: Add python-flaky, python-pytest, and python-pytest-xdist. Change-Id: Ie222aa1111720f2e39b950b79d9e707401be7e8f
2024-03-14gnu: packages: python-web: Sort use-modules alphabetically.Sharlatan Hellseher
* gnu/packages/python-web.scm: Sort #:use-module alphabetically to ease maintenance. Change-Id: Id01b66ff7eaf610895c1275c2abfd9de2e537d8e
2024-03-14gnu: Add python-zodb.Troy Figiel
* gnu/packages/python-web.scm (python-zodb): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add python-zodbpickle.Troy Figiel
* gnu/packages/python-web.scm (python-zodbpickle): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add python-zconfig.Troy Figiel
* gnu/packages/python-web.scm (python-zconfig): New variable. Signed-off-by: Sharlatan Hellseher <sharlatanus@gmail.com>
2024-03-14gnu: Add morpheus.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (morpheus): New variable. Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de> Change-Id: I4bf14414f497ff17690b1d26420d442d236fd6b5
2024-03-14teams: Add Tanguy Le Carrour.Tanguy Le Carrour
* etc/teams.scm.in ("Tanguy Le Carrour"): New member. Change-Id: Ic1b1588a5a8bc67ee8e135c3069966f139374529 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: raspi-gpio: Make public.Jean-Pierre De Jesus DIAZ
As it's unclear why it's not. * gnu/packages/raspberry-pi.scm (raspi-gpio): Make variable public. Change-Id: Iaf2789120a726d702d97c3a30a32e3b2cf5da3f1 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: combinatorial-blas: Update source hash.Christopher Baines
Diffoscope shows there are changes, but they don't look significant. * gnu/packages/maths.scm (combinatorial-blas): Update source hash. Change-Id: I32db6df0ef7c652572b1e874fe22175a4b66af6e
2024-03-14doc: Fix section on LUKS support.Fabio Natali
Only LUKS1 is supported in Guix at the time of this commit. Contrarily to what reported in previous versions of this section, LUKS2 is not supported. * doc/guix.texi (Keyboard Layout, Networking, and Partitioning)[Disk Partitioning]: Fix section on LUKS support. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: Ia670963178810174d3ea4585c537defbaaeb0f25
2024-03-14gnu: openjdk21: Update to 21.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk21): Update to 21.0.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk20: Update to 20.0.2.Greg Hogan
* gnu/packages/java.scm (openjdk20): Update to 20.0.2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk18: Update to 18.0.2.1.Greg Hogan
* gnu/packages/java.scm (openjdk18): Update to 18.0.2.1. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk17: Update to 17.0.10.Greg Hogan
* gnu/packages/java.scm (openjdk17): Update to 17.0.10. Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-03-14gnu: openjdk15: Update to 15.0.10.Greg Hogan
* gnu/packages/java.scm (openjdk15): Update to 15.0.10. Signed-off-by: Christopher Baines <mail@cbaines.net>
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