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2022-07-02gnu: r-bookdown: Update to 0.27.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.27.
2022-07-02gnu: r-globals: Update to 0.15.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-globals): Update to 0.15.1.
2022-07-02gnu: r-epi: Update to 2.47.Ricardo Wurmus
* gnu/packages/cran.scm (r-epi): Update to 2.47.
2022-07-02gnu: r-strucchange: Update to 1.5-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-strucchange): Update to 1.5-3.
2022-07-02gnu: r-waveslim: Update to 1.8.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-waveslim): Update to 1.8.3.
2022-07-02gnu: r-admisc: Update to 0.29.Ricardo Wurmus
* gnu/packages/cran.scm (r-admisc): Update to 0.29.
2022-07-02gnu: r-performance: Update to 0.9.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): Update to 0.9.1.
2022-07-02gnu: r-emmeans: Update to 1.7.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.7.5.
2022-07-02gnu: r-sandwich: Update to 3.0-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-sandwich): Update to 3.0-2. [source]: Add snippet to remove generated files.
2022-07-02gnu: r-raster: Update to 3.5-21.Ricardo Wurmus
* gnu/packages/cran.scm (r-raster): Update to 3.5-21.
2022-07-02gnu: r-itsadug: Update to 2.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-itsadug): Update to 2.4.1.
2022-07-02gnu: r-tinytex: Update to 0.40.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.40.
2022-07-02gnu: r-qap: Update to 0.1-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-qap): Update to 0.1-2.
2022-07-02gnu: r-processx: Update to 3.6.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-processx): Update to 3.6.1.
2022-07-02gnu: r-broom: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 1.0.0.
2022-07-02gnu: r-idr: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-idr): Update to 1.3.
2022-07-02gnu: r-pkgload: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgload): Update to 1.3.0. [propagated-inputs]: Remove r-rstudioapi; add r-fs and r-glue.
2022-07-02gnu: r-ps: Update to 1.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.7.1.
2022-07-02gnu: r-partykit: Update to 1.2-16.Ricardo Wurmus
* gnu/packages/cran.scm (r-partykit): Update to 1.2-16.
2022-07-02gnu: r-reordercluster: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reordercluster): Update to 2.0. [propagated-inputs]: Add r-gtools.
2022-07-02gnu: r-ggpmisc: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpmisc): Update to 0.4.7.
2022-07-02gnu: r-restfulr: Update to 0.0.15.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-restfulr): Update to 0.0.15.
2022-07-02gnu: ocaml-migrate-parsetree: Update to 2.4.0.Julien Lepiller
* gnu/package/ocaml.scm (ocaml-migrate-parsetree): Update to 2.4.0.
2022-07-02gnu: ocaml-lwt-react: Update to 1.2.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt-react): Update to 1.2.0.
2022-07-02gnu: ocaml-lwt: Update to 5.6.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.6.1.
2022-07-02gnu: dune: Update to 3.3.1.Julien Lepiller
* gnu/packages/ocaml.scm (dune): Update to 3.3.1.
2022-07-02gnu: ocaml-camlp-streams: Update to 5.0.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-camlp-streams): Update to 5.0.1.
2022-07-02gnu: Add ruby-blather.Stephen Paul Weber
* gnu/packages/ruby.scm (ruby-blather): New variable. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-07-02gnu: Add ruby-niceogiri.Stephen Paul Weber
* gnu/packages/ruby.scm (ruby-niceogiri): New variable. Signed-off-by: Raghav Gururajan <rg@raghavgururajan.name>
2022-07-02gnu: gdk-pixbuf: Add removal hint for libx11.Liliana Marie Prikler
* gnu/packages/gtk.scm (gdk-pixbuf)[propagated-inputs]: Add hint to remove libx11 on core-updates.
2022-07-02gnu: Add gdk-pixbuf-xlib.Tomasz Jeneralczyk
This was part of gtk-pixbuf before but was split into its own library in version 2.42.0: https://gitlab.gnome.org/GNOME/gdk-pixbuf/-/tags/2.42.0 * gnu/packages/gtk.scm (gtk-pixbuf-xlib): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: dino: Run tests.Liliana Marie Prikler
* gnu/packages/messaging.scm (dino)[arguments]<#:tests?>: Drop. <#:configure-flags>: Add “-DBUILD_TESTS=true”. <#:phases>: Replace ‘check’ with manual invocations of the test binaries.
2022-07-02gnu: dino: Use new package style.Liliana Marie Prikler
* gnu/packages/messaging.scm (dino)[arguments]: Convert to list of G-Expressions. [native-inputs, inputs]: Drop labels.
2022-07-02gnu: Add kaidan.Raghav Gururajan
* gnu/packages/messaging.scm (kaidan): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: bitmask: Update to 0.21.11.Raghav Gururajan
* gnu/packages/vpn.scm (bitmask)[version]: Update to 0.21.11. [inputs]: Add qtsvg.
2022-07-02gnu: sbcl-nhooks: Update to 1.1.1.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-nhooks): Update to 1.1.1.
2022-07-02gnu: gdm: Use regular check.Thiago Jung Bauermann
* gnu/packages/gnome.scm (gdm)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: iodine: Use regular check.Thiago Jung Bauermann
* gnu/packages/networking.scm (iodine)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: libsbml: Use regular check.Thiago Jung Bauermann
* gnu/packages/bioinformatics.scm (libsbml)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: edi: Use regular check.Thiago Jung Bauermann
* gnu/packages/enlightenment.scm (edi)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: burp: Use regular check.Thiago Jung Bauermann
* gnu/packages/backup.scm (burp)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: libsigrokdecode: Use regular check.Thiago Jung Bauermann
* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: recutils: Use regular check.Thiago Jung Bauermann
* gnu/packages/databases.scm (recutils)[native-inputs]: Replace check-0.14 with check. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-07-02gnu: curl: Skip failing test on x86-32.Liliana Marie Prikler
* gnu/packages/curl.scm (curl-7.84.0)[arguments]<#:phases>: When running on x86-32, add a phase to skip test 3026 “curl_global_init thread-safety”.
2022-07-02gnu: ibus-anthy: Modernize arguments.Liliana Marie Prikler
* gnu/packages/ibus.scm (ibus-anthy)[arguments]: Convert to list of G-Expressions.
2022-07-02gnu: ibus-anthy: Archaize wrapper.Liliana Marie Prikler
This is a follow-up to 39b118776bbbaed049f8bcafa27bde30d9d0b2f6, which applied the wrong modernization metaphors. For more information, see <https://issues.guix.gnu.org/52576#16>. * gnu/packages/ibus.scm (ibus-anthy)[#:phases]<wrap-programs>: Refer to outputs by assoc-ref.
2022-07-01tests: Adjust 'guix graph' test to latest OCaml changes.Ludovic Courtès
* tests/graph.scm ("reverse bag DAG"): Adjust to latest OCaml changes by looking at dune/ocaml-camomile/ocaml-utop.
2022-07-01profiles: Do not repeat entries in 'manifest' file.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/55499>. Reported by Ricardo Wurmus <rekado@elephly.net>. With this change, the manifest file created for: guix install r r-seurat r-cistopic r-monocle3 r-cicero-monocle3 r-assertthat goes from 5.7M to 176K. Likewise, on this profile, wall-clock time of: GUIX_PROFILING=gc guix package -I goes from 0.7s to 0.1s, with heap usage going from 55M to 9M. * guix/profiles.scm (manifest->gexp)[optional]: New procedure. [entry->gexp]: Turn into a monadic procedure. Return a 'repeated' sexp if ENTRY was already visited before. Adjust caller accordingly. Bump manifest version. (sexp->manifest)[sexp->manifest-entry]: Turn into a monadic procedure. Add case for 'repeated' nodes. Add each entry to the current state vhash. Add clause for version 4 manifests. [sexp->manifest-entry/v3]: New procedure, with former 'sexp->manifest-entry' code. * tests/profiles.scm ("deduplication of repeated entries"): New test. * guix/build/profiles.scm (manifest-sexp->inputs+search-paths)[let-fields]: New macro. Use it. Expect version 4. Add clause for 'repeated' nodes.
2022-07-01tests: Augment profile collision test.Ludovic Courtès
* tests/profiles.scm ("collision of propagated inputs"): Check the parents of ENTRY1 and ENTRY2.
2022-07-01services: openssh: Listen on IPv6 only when IPv6 is supported.Ludovic Courtès
Fixes <https://issues.guix.gnu.org/56327>. Reported by André Batista <nandre@riseup.net>. * gnu/services/ssh.scm (openssh-shepherd-service)[ipv6-support?]: New variable. Use it in 'start' method.
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