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2019-03-18gnu: Add blasr.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (blasr): New variable.
2019-03-18gnu: Add blasr-libcpp.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (blasr-libcpp): New variable.
2019-03-18gnu: Add pbbam.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pbbam): New variable.
2019-03-18gnu: Add arcan-wayland.Lprndn
* gnu/packages/arcan.scm (arcan-wayland): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-18gnu: Add xarcan.Lprndn
* gnu/packages/arcan.scm (xarcan): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-18doc: Expound on inputattach service.Ludovic Courtès
* doc/guix.texi (Miscellaneous Services): Expound documentation of inputattach service.
2019-03-18gnu: inputattach: Build with -O2.Ludovic Courtès
* gnu/packages/linux.scm (inputattach)[arguments]: Pass "-O2" to GCC.
2019-03-18gnu: Add inputattach service.Tim Gesthuizen
Add a service that runs inputattach as a daemon to translate events from serial ports. * gnu/services/desktop.scm (<inputattach-configuration>): New record type. * gnu/services/desktop.scm (inputattach-service-type): New service type. * doc/guix.texi (Miscellaneous Services): Add inputattach Service subsubheading. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-18gnu: Add inputattachTim Gesthuizen
* gnu/packages/linux.scm (inputattach): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-18describe: Warn about 'GUIX_PACKAGE_PATH' in json and recutils format.Ludovic Courtès
Fixes <https://bugs.gnu.org/34884>. Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * guix/scripts/describe.scm (display-package-search-path): Add catch-all case for FMT.
2019-03-17gnu: python-pandas: Update to 0.24.2.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pandas): Update to 0.24.2. [phases]{patch-which}: Add phase. [inputs]: Add WHICH.
2019-03-17gnu: python-pandas: Enable Excel file format support.Maxim Cournoyer
* gnu/packages/python.scm (python-pandas)[phases]{check}: Re-instate the tests from the test_excel.py module. * gnu/packages/python.scm (python-pandas)[propagated-inputs]: Add python-openpyxl and python-xlrd.
2019-03-17gnu: Add python-openpyxl.Maxim Cournoyer
* gnu/packages/python.scm (python-openpyxl): New variable.
2019-03-17gnu: Add python-jdcal.Maxim Cournoyer
* gnu/packages/python.scm (python-jdcal): New variable.
2019-03-17gnu: Add python-et-xmlfile.Maxim Cournoyer
* gnu/packages/python.scm (python-et-xmlfile): New variable.
2019-03-18gnu: libcxx: Correct sha256 hash.Tobias Geerinckx-Rice
* gnu/packages/llvm.scm (libcxx)[source]: Fix it.
2019-03-17guix build: '--with-branch' strips slashes from the version string.Ludovic Courtès
This fixes things like: guix build glibc \ --with-git-url=glibc=git://sourceware.org/git/glibc.git \ --with-branch=glibc=release/2.25/master whereby slashes would before go straight to the 'version' field, leading to an invalid store file name. * guix/scripts/build.scm (transform-package-source-branch)[replace]: Replace slashes with hyphens in BRANCH when building the version string.
2019-03-17guix build: '--with-commit' makes recursive checkouts.Ludovic Courtès
This was an omission from commit 024a6bfba906742c136a47b4099f06880f1d3f15. * guix/scripts/build.scm (transform-package-source-commit): Add 'recursive?' field to SOURCE. * tests/scripts-build.scm ("options->transformation, with-branch") ("options->transformation, with-commit"): New tests.
2019-03-17guix build: Transformation options match packages by spec.Ludovic Courtès
This allows us to combine several transformations on a given package, in particular '--with-git-url' and '--with-branch'. Previously transformations would ignore each other since they would all take (specification->package SOURCE) as their replacement source, compare it by identity, which doesn't work if a previous transformation has already changed SOURCE. * guix/scripts/build.scm (evaluate-replacement-specs): Adjust to produce an alist as expected by 'package-input-rewriting/spec', with a package spec as the first element of each pair. (evaluate-git-replacement-specs): Likewise. (transform-package-inputs): Adjust accordingly and use 'package-input-rewriting/spec'. (transform-package-inputs/graft): Likewise. (transform-package-source-branch, transform-package-source-commit): Use 'package-input-rewriting/spec'. (transform-package-source-git-url): Likewise, and adjust the REPLACEMENTS alist accordingly. (options->transformation): Iterate over OPTS instead of over %TRANSFORMATIONS. Invoke transformations one by one. * tests/scripts-build.scm ("options->transformation, with-input"): Adjust test to compare packages by name rather than by identity. ("options->transformation, with-git-url + with-branch"): New test.
2019-03-17guix build: Factorize 'package-git-url'.Ludovic Courtès
* guix/scripts/build.scm (package-git-url): New procedure. (evaluate-git-replacement-specs): Use it.
2019-03-17packages: Add 'package-input-rewriting/spec'.Ludovic Courtès
* guix/packages.scm (package-input-rewriting/spec): New procedure. * tests/packages.scm ("package-input-rewriting/spec") ("package-input-rewriting/spec, partial match"): New tests. * doc/guix.texi (Defining Packages): Document it.
2019-03-17guix build: Add '--with-git-url'.Ludovic Courtès
* guix/scripts/build.scm (%not-equal): New variable. (evaluate-git-replacement-specs): Use it instead of local variable 'not-equal'. (transform-package-source-git-url): New procedure. (%transformations): Add 'with-git-url'. (%transformation-options, show-transformation-options-help): Add '--with-git-url'. * tests/scripts-build.scm ("options->transformation, with-git-url"): New test.
2019-03-17scripts: 'warn-about-old-distro' looks at the age of the running Guix.Ludovic Courtès
This fixes a discrepancy that could be seen when running: sudo guix system … where 'guix' would warn about the age of root's Guix, even though the running Guix is the user's, not root's. * guix/scripts.scm (warn-about-old-distro)[false-if-not-found]: Remove. Obtain the profile date by calling 'current-profile-date' instead of stat'ing "current-guix".
2019-03-17describe: Add 'current-profile-date'.Ludovic Courtès
* guix/describe.scm (current-profile-date): New procedure.
2019-03-17gnu: tome4: Fix build.Oleg Pykhalov
* gnu/packages/games.scm (tome4)[source]: Patch 'src/tgl.h' in snippet.
2019-03-17gnu: Add editorconfig-vim.Efraim Flashner
* gnu/packages/vim.scm (editorconfig-vim): New variable.
2019-03-17gnu: Add editorconfig-core-c.Efraim Flashner
* gnu/packages/text-editors.scm (editorconfig-core-c): New variable.
2019-03-17gnu: unison: Fix manual generation.Julien Lepiller
* gnu/packages/ocaml.scm (unison)[arguments]: Fix documentation generation.
2019-03-17gnu: opam: Update to 2.0.3.Julien Lepiller
* gnu/packages/ocaml.scm (opam): Update to 2.0.3.
2019-03-17guix system: Fix success report of the bootloader installation.Ludovic Courtès
Fixes <https://bugs.gnu.org/34890>. Reported by Jack Hill <jackhill@jackhill.us>. Regression introduced in 21fcfe1ee969cc477dc41486ae4074e655d44274. * guix/scripts/system.scm (bootloader-installer-script): Ungexp DEVICE.
2019-03-17gnu: console-setup: Set absolute file name of 'cat' in 'ckbcomp'.Ludovic Courtès
* gnu/packages/xorg.scm (console-setup)[arguments]: Add 'patch-file-names' phase.
2019-03-17vm: 'expression->derivation-in-linux-vm' leads to a kernel panic upon failure.Ludovic Courtès
Partially fixes <https://bugs.gnu.org/34276>. Reported by Tobias Geerinckx-Rice <me@tobias.gr>. * gnu/system/vm.scm (expression->derivation-in-linux-vm)[loader]: Call 'exit' when USER-BUILDER exits with a non-zero code.
2019-03-17gnu: x11perf: Update to 1.6.1.Marius Bakke
* gnu/packages/xorg.scm (x11perf): Update to 1.6.1.
2019-03-17gnu: ceph: Add XFS support.Marius Bakke
* gnu/packages/storage.scm (ceph)[arguments]: Adjust #:configure-flags. [inputs]: Add XFSPROGS.
2019-03-17gnu: xfsprogs: Install the headers.Marius Bakke
* gnu/packages/linux.scm (xfsprogs)[arguments]: Add #:phases.
2019-03-17gnu: ceph: Install headers to the "lib" output.Marius Bakke
The previous provision for this has been defunct since version 12. * gnu/packages/storage.scm (ceph)[arguments]: Remove obsolete substitution in favor of a configure flag.
2019-03-17gnu: ghc-xmonad-contrib: Update to 0.15.Tobias Geerinckx-Rice
* gnu/packages/wm.scm (ghc-xmonad-contrib): Update to 0.15.
2019-03-17gnu: xmonad: Update to 0.15.Tobias Geerinckx-Rice
* gnu/packages/wm.scm (xmonad): Update to 0.15.
2019-03-17gnu: xmonad: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/wm.scm (xmonad)[source]: Hard-code NAME.
2019-03-17gnu: libxxf86dga: Update to 1.1.5.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (libxxf86dga): Update to 1.1.5. Re-indent.
2019-03-17gnu: xorg-cf-files: Update to 1.0.6.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (xorg-cf-files): Update to 1.0.6.
2019-03-17gnu: imake: Update to 1.0.8.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (imake): Update to 1.0.8.
2019-03-17gnu: ansible: Update to 2.7.9.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (ansible): Update to 2.7.9.
2019-03-17gnu: rust: Work around Hydra bug.Danny Milosavljevic
* gnu/packages/rust.scm (rust-1.20)[properties]: Work around Hydra bug.
2019-03-17gnu: wine-staging: Update to 4.4.Rutger Helling
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.4. * gnu/packages/wine.scm (wine-staging): Update to 4.4.
2019-03-17gnu: gajim-omemo: Update to 2.6.28.Rutger Helling
* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.28.
2019-03-17gnu: Add kaldi-gstreamer-server.Ricardo Wurmus
* gnu/packages/machine-learning.scm (kaldi-gstreamer-server): New variable.
2019-03-17gnu: Add python2-ws4py-for-kaldi-gstreamer-server.Ricardo Wurmus
* gnu/packages/python-web.scm (python2-ws4py-for-kaldi-gstreamer-server): New variable.
2019-03-16gnu: lua-lpeg: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/lua.scm (make-lua-lpeg): Update to 1.0.2.
2019-03-16gnu: perl-ev: Update to 4.25.Tobias Geerinckx-Rice
* gnu/packages/libevent.scm (perl-ev): Update to 4.25.
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