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2019-08-08gnu: Add freebayes.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (freebayes): New variable.
2019-08-08gnu: Add vcflib.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (vcflib): New variable.
2019-08-08gnu: Add fastahack.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (fastahack): New variable.
2019-08-08gnu: Add fsom.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (fsom): New variable.
2019-08-08gnu: Add multichoose.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (multichoose): New variable.
2019-08-08gnu: Add smithwaterman.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (smithwaterman): New variable.
2019-08-08gnu: Add tabixpp.Pierre Neidhardt
* gnu/packages/bioinformatics.scm (tabixpp): New variable.
2019-08-08gnu: Add network-manager-openconnect.Efraim Flashner
* gnu/packages/gnome.scm (network-manager-openconnect): New variable.
2019-08-07gnu: ghc-trifecta: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-trifecta)[arguments]: Disable tests.
2019-08-07gnu: ghc-yaml: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-yaml)[arguments]: Disable tests.
2019-08-07gnu: ghc-libmpd-haskell: Disable tests.Robert Vollmert
* gnu/packages/haskell.scm (ghc-libmpd-haskell)[arguments]: Disable tests.
2019-08-07gnu: Remove ghc-packedstring.Robert Vollmert
The package has no reverse dependencies and is deprecated upstream. * gnu/packages/haskell.scm (ghc-packedstring): Remove variable.
2019-08-07gnu: Remove ghc-haddock-test.Robert Vollmert
The package doesn't build, has no reverse dependencies, and is deprecated upstream. * gnu/packages/haskell.scm (ghc-haddock-test): Remove variable.
2019-08-07gnu: Remove ghc-regex-tdfa-rc.Robert Vollmert
The package doesn't build, has no reverse dependencies, and is deprecated upstream. * gnu/packages/haskell.scm (ghc-regex-tdfa-rc): Remove variable.
2019-08-07gnu: Add ghc-snap-server.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-snap-server): New variable.
2019-08-07gnu: Add ghc-snap-core.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-snap-core): New variable.
2019-08-07gnu: Add ghc-http-streams.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-http-streams): New variable.
2019-08-07gnu: Add ghc-http-common.Robert Vollmert
* gnu/packages/haskell-web.scm (ghc-http-common): New variable.
2019-08-07gnu: Add ghc-openssl-streams.Robert Vollmert
* gnu/packages/haskell-crypto.scm (ghc-openssl-streams): New variable.
2019-08-07gnu: Add ghc-hsopenssl.Robert Vollmert
* gnu/packages/haskell-crypto.scm (ghc-hsopenssl): New variable.
2019-08-07gnu: Add ghc-io-streams-haproxy.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-io-streams-haproxy): New variable.
2019-08-07gnu: Add ghc-io-streams.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-io-streams): New variable.
2019-08-07gnu: Add ghc-zlib-bindings.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-zlib-bindings): New variable.
2019-08-07gnu: Add ghc-threads.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-threads): New variable.
2019-08-07gnu: Add ghc-readable.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-readable): New variable.
2019-08-07gnu: Add ghc-concurrent-extra.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-concurrent-extra): New variable.
2019-08-07gnu: Add ghc-language-glsl.Robert Vollmert
* gnu/packages/haskell-xyz.scm (ghc-language-glsl): New variable.
2019-08-07gnu: Add ghc-prettyclass.Robert Vollmert
* gnu/package/haskell-xyz.scm: New file. * gnu/local.mk: Add it. * gnu/packages/haskell-xyz.scm (ghc-prettyclass): New variable.
2019-08-07gnu: ghc-ansi-terminal: Downgrade to 0.8.0.4.Robert Vollmert
This reverts commits cbff89d126bf5985cfa4884f543c0908c437ff41, 5a499d0f7d5b98443ed0b2c41f2651f66a84ab5e, and 4e3ebbfb1649063bcc0f350523868c667e6699dd. * gnu/packages/haskell.scm (ghc-ansi-terminal): Downgrade to 0.8.0.4. (ghc-ansi-terminal-0.8): Delete variable. (ghc-ansi-wl-pprint, ghc-concurrent-output)[inputs]: Replace 'ghc-ansi-terminal-0.8' with 'ghc-ansi-terminal'. * gnu/packages/haskell-check.scm (ghc-hedgehog)[inputs]: Likewise.
2019-08-07gnu: ghc-validation: Downgrade to 1.Robert Vollmert
This is the Stackage LTS version, which is compatible with ansi-terminal 0.8. * gnu/packages/haskell.scm (ghc-validation): Downgrade to 1.
2019-08-07gnu: ghc-concurrent-output: Downgrade to 1.10.9.Robert Vollmert
This is the Stackage LTS version, which is compatible with ansi-terminal 0.8. * gnu/packages/haskell.scm (ghc-concurrent-output): Downgrade to 1.10.9 and use ghc-ansi-terminal-0.8.
2019-08-07gnu: ghc-validation: Do not generate 'Setup.hs'.Robert Vollmert
This is handled by the build system. * gnu/packages/haskell.scm (ghc-validation): Remove 'arguments'.
2019-08-07gnu: Remove ghc-parsec, ghc-stm, ghc-text, ghc-xhtml.Robert Vollmert
These are ghc-8.4-bundled packages, removing to avoid build conflicts. * gnu/packages/haskell.scm (ghc-parsec, ghc-stm, ghc-text): Remove. * gnu/packages/haskell-web.scm (ghc-xhtml): Remove. * gnu/packages/agda.scm (agda)[inputs]: Remove ghc-stm and ghc-text. * gnu/packages/bioinformatics.scm (ngless)[inputs]: Remove ghc-parsec and ghc-text. * gnu/packages/haskell-apps.scm (darcs)[inputs]: Remove ghc-parsec. (git-annex)[inputs]: Remove ghc-stm and ghc-text. (ghc-sdl2)[inputs]: Remove ghc-text. (ghc-sdl2-image)[inputs]: Remove ghc-text. * gnu/packages/haskell-check.scm (ghc-tasty-ant-xml)[inputs]: Remove ghc-stm. (ghc-tasty)[inputs]: Remove ghc-stm. (ghc-tasty-rerun)[inputs]: Same. (ghc-quickcheck-instances)[inputs]: Remove ghc-text. (ghc-hedgehog)[inputs]: Remove ghc-stm. * gnu/packages/haskell-crypto.scm (ghc-asn1-encoding)[inputs]: Remove ghc-text. * gnu/packages/haskell-web.scm (ghc-tagsoup)[inputs]: Remove ghc-text. (ghc-cookie)[inputs]: Same. (ghc-http-types)[inputs]: Same. (ghc-http)[inputs]: Remove ghc-parsec. (ghc-http-client)[inputs]: Remove ghc-text. (ghc-http2)[inputs]: Remove ghc-stm. (ghc-http-conduit)[native-inputs]: Remove ghc-text. (ghc-wai)[inputs]: Same. (ghc-wai-extra)[inputs]: Same. (ghc-warp)[inputs]: Remove ghc-stm and ghc-text. (ghc-xss-sanitize)[native-inputs]: Remove ghc-text. (ghc-css-text)[inputs]: Same. (ghc-mime-types)[inputs]: Same. (ghc-blaze-html)[inputs]: Same. (ghc-aeson)[inputs]: Same. (ghc-aeson-pretty)[inputs]: Same. (ghc-aeson-qq)[inputs]: Remove ghc-text and ghc-parsec. (ghc-multipart)[inputs]: Remove ghc-parsec. (ghc-uri-encode)[inputs]: Remove ghc-text. (ghc-path-pieces)[inputs]: Same. (ghc-yesod-core)[inputs]: Remove ghc-text and ghc-parsec. (ghc-yesod-persistent)[inputs]: Remove ghc-text. (ghc-yesod-form)[inputs]: Same. (ghc-yesod)[inputs]: Same. (ghc-hxt-regex-xmlschema)[inputs]: Remove ghc-parsec and ghc-text. (ghc-hxt)[inputs]: Remove ghc-parsec. * gnu/packages/haskell.scm (ghc-convertible)[inputs]: Remove ghc-text. (ghc-double-conversion)[inputs]: Same. (ghc-tree-diff)[inputs]: Remove ghc-parsec and ghc-text. [native-inputs]: Remove ghc-parsec. (ghc-cgi)[inputs]: Remove ghc-parsec. (hlint)[inputs]: Remove ghc-text. (ghc-openglraw)[inputs]: Remove ghc-text. (ghc-opengl)[inputs]: Same. (ghc-streaming-commons)[inputs]: Remove ghc-stm and ghc-text. (ghc-hackage-security)[inputs]: Remove ghc-parsec. (cabal-install)[inputs]: Remove ghc-stm. (ghc-parsec-numbers)[inputs]: Remove ghc-parsec. (ghc-safesemaphore)[inputs]: Remove ghc-stm. (ghc-text-binary)[inputs]: Remove ghc-text. (ghc-hashable)[inputs]: Remove ghc-text. (ghc-transformers-base)[inputs]: Remove ghc-stm. (ghc-indents)[inputs]: Remove ghc-parsec. (ghc-regex-tdfa-rc)[inputs]: Same. (ghc-regex-tdfa-text)[inputs]: Same. (ghc-regex)[inputs]: Remove ghc-text. (ghc-parsers)[inputs]: Remove ghc-parsec and ghc-text. (ghc-attoparsec)[inputs]: Remove ghc-text. (ghc-attoparsec-bootstrap)[inputs]: Same. (ghc-zip-archive)[inputs]: Same. (ghc-polyparse)[inputs]: Same. (ghc-reducers)[inputs]: Same. (ghc-xml)[inputs]: Same. (ghc-feed)[inputs]: Same. (ghc-exceptions)[inputs]: Remove ghc-stm. (ghc-case-insensitive)[inputs]: Remove ghc-text. (ghc-megaparsec)[inputs]: Same. (ghc-network-uri)[inputs]: Remove ghc-parsec. (ghc-monad-control)[inputs]: Remove ghc-stm. (ghc-blaze-builder)[inputs]: Remove ghc-text. (ghc-blaze-markup)[inputs]: Same. (ghc-async)[inputs]: Remove ghc-stm. (ghc-invariant)[inputs]: Same. (ghc-statevar)[inputs]: Same. (ghc-lens)[inputs]: Remove ghc-text. (ghc-cheapskate)[inputs]: Same. (ghc-semigroups)[inputs]: Same. (ghc-semigroups-bootstrap)[inputs]: Same. (ghc-fast-logger)[inputs]: Same. (ghc-scientific)[inputs]: Same. (ghc-scientific-bootstrap)[inputs]: Same. (ghc-texmath)[inputs]: Remove ghc-parsec. (ghc-highlighting-kate)[inputs]: Same. (ghc-cmark)[inputs]: Remove ghc-text. (ghc-cmark-gfm)[inputs]: Same. (ghc-th-lift-instances)[inputs]: Same. (ghc-yaml)[inputs]: Same. (ghc-hslua)[inputs]: Same. (ghc-hslua-module-text)[inputs]: Same. (ghc-skylighting-core)[inputs]: Same. (ghc-doctemplates)[inputs]: Remove ghc-text and ghc-parsec. (ghc-pandoc)[inputs]: Same. (ghc-typed-process)[inputs]: Remove ghc-stm. (ghc-conduit-extra)[inputs]: Remove ghc-stm and ghc-text. (ghc-xml-types)[inputs]: Remove ghc-text. (ghc-xml-conduit)[inputs]: Same. (ghc-pandoc-citeproc)[inputs]: Remove ghc-text and ghc-parsec. (ghc-regex-tdfa)[inputs]: Remove ghc-parsec. (ghc-wl-pprint-text)[inputs]: Remove ghc-text. (ghc-graphviz)[inputs]: Same. (ghc-system-filepath-bootstrap)[inputs]: Same. (ghc-system-fileio-bootstrap)[inputs]: Same. (ghc-shelly)[inputs]: Same. (ghc-chell)[inputs]: Same. (ghc-system-filepath)[inputs]: Same. (ghc-system-fileio)[inputs]: Same. (ghc-fsnotify)[inputs]: Same. (ghc-json)[inputs]: Remove ghc-text and ghc-parsec. (ghc-esqueleto)[inputs]: Remove ghc-text. (shellcheck)[inputs]: Remove ghc-parsec. (ghc-errors)[inputs]: Remove ghc-text. (ghc-chunked-data)[inputs]: Same. (ghc-uuid-types)[inputs]: Same. (ghc-uuid)[inputs]: Same. (ghc-rebase)[inputs]: Remove ghc-stm and ghc-text. (ghc-foldl)[inputs]: Remove ghc-text. (ghc-mono-traversable)[inputs]: Same. (ghc-conduit-combinators)[inputs]: Same. (ghc-aws)[inputs]: Same. (ghc-stm-chans)[inputs]: Remove ghc-stm. (ghc-monad-logger)[inputs]: Remove ghc-text and ghc-stm. (ghc-shakespeare)[inputs]: Remove ghc-parsec and ghc-text. (ghc-resource-pool)[inputs]: Remove ghc-stm. (ghc-attoparsec-iso8601)[inputs]: Remove ghc-text. (ghc-http-api-data)[inputs]: Same. (ghc-persistent)[inputs]: Same. (ghc-aeson-compat)[inputs]: Same. (ghc-persistent-template)[inputs]: Same. (ghc-unliftio)[inputs]: Remove ghc-stm. (ghc-persistent-sqlite)[native-inputs]: Remove ghc-text. (ghc-bytes)[inputs]: Same. (ghc-missingh)[inputs]: Remove ghc-parsec. (ghc-rio)[inputs]: Remove ghc-text. (ghc-cairo)[inputs]: Same. (ghc-atomic-write)[inputs]: Remove ghc-text. [native-inputs]: Same. (ghc-stm-conduit)[inputs]: Remove ghc-stm. (ghc-conduit-algorithms)[inputs]: Same. (ghc-interpolate)[native-inputs]: Remove ghc-text. (ghc-hpack)[inputs]: Same. (ghc-inline-c)[inputs]: Remove ghc-parsec. (ghc-configurator)[inputs]: Remove ghc-text. (ghc-c2hs)[native-inputs]: Same. (ghc-libmpd)[inputs]: Same. (ghc-concurrent-output)[inputs]: Remove ghc-stm. * gnu/packages/idris.scm (idris)[inputs]: Remove ghc-text. * gnu/packages/wm.scm (xmobar)[inputs]: Remove ghc-parsec and ghc-stm. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-08-07import: hackage: Update list of ghc-included packages.Robert Vollmert
It turns out the list in the release notes is incomplete. This updates the list from /gnu/store/<hash>-ghc-8.4.3/lib/ghc-8.4.3. * guix/import/hackage.scm (ghc-standard-libraries): Update list.
2019-08-07gnu: Add ghc-8.6.Robert Vollmert
* gnu/packages/haskell.scm (ghc-8.6): New variable. Co-authored-by: Timothy Sample <samplet@ngyro.com>
2019-08-07gnu: ghc-8: Rename to 'ghc-8.4'.Robert Vollmert
* gnu/packages/haskell.scm (ghc-8): Rename to... (ghc-8.4): ...this. (ghc-8): New variable.
2019-08-08gnu: wpa-supplicant: Update to 2.9.Marius Bakke
* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.9.
2019-08-08gnu: xf86-video-intel: Update to 2.99.917-14.6f4972d.Marius Bakke
* gnu/packages/xorg.scm (xf86-video-intel): Update to 2.99.917-14.6f4972d.
2019-08-07machine: Add 'build-locally?' field for managed hosts.Jakob L. Kreuze
* gnu/machine/ssh.scm (machine-ssh-configuration-build-locally?): New variable. (managed-host-remote-eval): Pass 'build-locally?' to 'remote-eval'.
2019-08-07Merge remote-tracking branch 'origin/master' into wip-texliveRicardo Wurmus
2019-08-07deploy: Use all machine modules when loading deploymentJakob L. Kreuze
* guix/scripts/deploy.scm (load-source-file): Enumerate and include all submodules of (gnu machine) when loading the provided deployment specification.
2019-08-07reconfigure: Improve tests for system activation.Jakob L. Kreuze
* gnu/tests/reconfigure.scm (run-switch-to-system-test): Assert that '/run/current-system' points to the activated system, and that new user accounts specified in the operating system declaration are created.
2019-08-07gnu: igt-gpu-tools: Rework custom phases.Efraim Flashner
* gnu/packages/admin.scm (igt-gpu-tools)[arguments]: Use custom 'autogen phase to replace 'bootstrap phase.
2019-08-07gnu: dosbox: Remove extra build phase.Efraim Flashner
* gnu/packages/emulators.scm (dosbox)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: zimg: Remove extra build phase.Efraim Flashner
* gnu/packages/image.scm (zimg)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: leptonica: Remove extra build phase.Efraim Flashner
* gnu/packages/image.scm (leptonica)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: ghmm: Remove extra build phase.Efraim Flashner
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: ghmm: Update source file-name field.Efraim Flashner
* gnu/packages/machine-learning.scm (ghmm)[source]: Change 'file-name field to include '-checkout' string.
2019-08-07gnu: dovecot-libsodium-plugin: Remove extra build phase.Efraim Flashner
* gnu/packages/mail.scm (dovecot-libsodium-plugin)[arguments]: Remove unneeded 'autogen phase.
2019-08-07gnu: dovecot-trees: Remove extra build phase.Efraim Flashner
* gnu/packages/mail.scm (dovecot-trees)[arguments]: Remove unneeded 'autogen phase.
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