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2019-03-26environment: Create /etc/group in containers....Reported by Pierre Neidhardt <mail@ambrevar.xyz>. * guix/scripts/environment.scm (launch-environment/container): Create GROUPS and call 'write-group'. * tests/guix-environment-container.sh: Test it. Ludovic Courtès
2019-03-26environment: Use (gnu build accounts) for /etc/passwd handling....* guix/scripts/environment.scm (launch-environment/container): Remove call to 'mock-passwd'; instantiate a <password-entry> instead. Call 'write-passwd' to write the pasword database instead of using custom code. (mock-passwd): Remove. * tests/guix-environment-container.sh: Test 'getpwuid'. Ludovic Courtès
2019-03-26build-self: Disable position recording....'guix pull -n' goes roughly from 40s to 35s. * build-aux/build-self.scm (build-program): Add call to 'read-disable'. Ludovic Courtès
2019-03-26gnu: current-guix: Delay effectful bits....* gnu/packages/package-management.scm (current-guix): Delay 'repository-root'. Ludovic Courtès
2019-03-26gnu: python-scanpy: Update to 1.4....* gnu/packages/bioinformatics.scm (python-scanpy): Update to 1.4. [source]: Fetch from git. [arguments]: Disable broken tests. [native-inputs]: Add python-pytest. [home-page]: Use HTTPS. Ricardo Wurmus
2019-03-26gnu: python-anndata: Update to 0.6.18....* gnu/packages/python-xyz.scm (python-anndata): Update to 0.6.18. Ricardo Wurmus
2019-03-26gnu: trim-galore: Update to 0.6.1....* gnu/packages/bioinformatics.scm (trim-galore): Update to 0.6.1. [arguments]: Adjust patching. Ricardo Wurmus
2019-03-26gnu: cutadapt: Update to 2.1....* gnu/packages/bioinformatics.scm (cutadapt): Update to 2.1. [source]: Fetch from pypi. [native-inputs]: Add python-setuptools-scm. Ricardo Wurmus
2019-03-26gnu: python-xopen: Update to 0.5.0....* gnu/packages/python-xyz.scm (python-xopen): Update to 0.5.0. Ricardo Wurmus
2019-03-26etc: Add "rename" snippet....* etc/snippets/text-mode/guix-commit-message-rename-package: New file. Pierre Neidhardt
2019-03-26gnu: edgar: Rename package to the-legend-of-edgar....* gnu/packages/games.scm (edgar): Define in terms of 'deprecated-package'. (the-legend-of-edgar): New variable, formerly known as "edgar". Pierre Neidhardt
2019-03-26gnu: btanks: Rename package to battle-tanks....* gnu/packages/games.scm (btanks): Define in terms of 'deprecated-package'. (battle-tanks): New variable, formerly known as "btanks". Pierre Neidhardt
2019-03-26gnu: tome4: Rename package to tales-of-maj-eyal....* gnu/packages/games.scm (tome4): Define in terms of 'deprecated-package'. (tales-of-maj-eyal): New variable, formerly known as "tome4". Pierre Neidhardt
2019-03-26gnu: crawl-tiles: Rename package to dungeon-crawl-stone-soup-tiles....* gnu/packages/games.scm (crawl-tiles): Define in terms of 'deprecated-package'. (dungeon-crawl-stone-soup-tiles): New variable, formerly known as "crawl-tiles". Pierre Neidhardt
2019-03-26gnu: crawl: Rename package to dungeon-crawl-stone-soup....* gnu/packages/games.scm (crawl): Define in terms of 'deprecated-package'. (dungeon-crawl-stone-soup): New variable, formerly known as "crawl". Pierre Neidhardt
2019-03-26gnu: fillets-ng: Rename package to fish-fillets-ng....* gnu/packages/games.scm (fillets-ng): Define in terms of 'deprecated-package'. (fish-fillets-ng): New variable, formerly known as "fillets-ng". Pierre Neidhardt
2019-03-26gnu: kiki: Rename package to kiki-the-nano-bot....* gnu/packages/games.scm (kiki): Define in terms of 'deprecated-package'. (kiki-the-nano-bot): New variable, formerly known as "kiki". Pierre Neidhardt
2019-03-26gnu: starfighter: Rename package to project-starfighter....* gnu/packages/games.scm (starfighter): Define in terms of 'deprecated-package'. (project-starfighter): New variable, formerly known as "starfighter". Pierre Neidhardt
2019-03-26gnu: wesnoth-server: Rename package to the-battle-for-wesnoth-server....* gnu/packages/games.scm (wesnoth-server): Define in terms of 'deprecated-package'. (the-battle-for-wesnoth-server): New variable, formerly known as "wesnoth-server". Pierre Neidhardt
2019-03-26gnu: wesnoth: Rename package to the-battle-for-wesnoth....* gnu/packages/games.scm (wesnoth): Define in terms of 'deprecated-package'. (the-battle-for-wesnoth): New variable, formerly known as "wesnoth". Pierre Neidhardt
2019-03-26gnu: abbaye: Rename package to l-abbaye-des-morts....* gnu/packages/games.scm (abbaye): Define in terms of 'deprecated-package'. (l-abbaye-des-morts): New variable, formerly known as "abbaye". Pierre Neidhardt
2019-03-26gnu: gnubg: Rename package to gnubackgammon....* gnu/packages/games.scm (gnubg): Define in terms of 'deprecated-package'. (gnubackgammon): New variable, formerly known as "gnubg". Pierre Neidhardt
2019-03-26gnu: cataclysm-dda: Rename package to cataclysm-dark-days-ahead....* gnu/packages/games.scm (cataclysm-dda): Define in terms of 'deprecated-package'. (cataclysm-dark-days-ahead): New variable, formerly known as "cataclysm-dda". Pierre Neidhardt
2019-03-26gnu: armagetronad: Rename package to armagetron-advanced....* gnu/packages/games.scm (armagetronad): Define in terms of 'deprecated-package'. (armagetron-advanced): New variable, formerly known as "armagetronad". Pierre Neidhardt
2019-03-26gnu: docker: Use disjunct temp directories for probing....* gnu/packages/patches/docker-use-fewer-modprobes.patch: Use disjunct temp directories for probing. Danny Milosavljevic
2019-03-26gnu: docker: Add comment....* gnu/packages/patches/docker-use-fewer-modprobes.patch: Add comment. Danny Milosavljevic
2019-03-26packages: Adjust to new calling convention for "thunked" fields....Fixes <https://bugs.gnu.org/34995>. This is a followup to abd4d6b33dba4de228e90ad15a8efb456fcf7b6e. * guix/packages.scm (package->bag): Adjust calls to INPUTS, PROPAGATED-INPUTS, NATIVE-INPUTS, and ARGS, passing them SELF as an argument. * gnu/packages/gnucash.scm (gnucash)[arguments]: Use (package-inputs this-record) intead of (inputs). * gnu/packages/version-control.scm (git)[arguments]: Likewise. Ludovic Courtès
2019-03-25gnu: gzdoom: Update to 3.7.2....* gnu/packages/games.scm (gzdoom): Update to 3.7.2. [source](uri): Update path. [source](snippet): Bundled libjpeg directory has been renamed. Signed-off-by: Kei Kebreau <kkebreau@posteo.net> nee
2019-03-25system: Add 'essential-services' field to <operating-system>....* gnu/system.scm (<operating-system>)[essential-services]: New field. (operating-system-directory-base-entries): Remove #:container? keyword and keep only the not-container branch. (essential-services): Likewise. (operating-system-services): Likewise, and call 'operating-system-essential-services' instead of 'essential-services'. (operating-system-activation-script): Remove #:container?. (operating-system-boot-script): Likewise. (operating-system-derivation): Likewise. * gnu/system/linux-container.scm (container-essential-services): New procedure. (containerized-operating-system): Use it and set the 'essential-services' field. (container-script): Remove call to 'operating-system-derivation'. * gnu/system/vm.scm (system-docker-image): Likewise. * doc/guix.texi (operating-system Reference): Document 'essential-services'. Ludovic Courtès
2019-03-25accounts: Add default value for the 'home-directory' field of <user-account>....* gnu/system/accounts.scm (<user-account>)[home-directory]: Mark as thunked and add a default value. (default-home-directory): New procedure. * doc/guix.texi (User Accounts): Remove 'home-directory' from example. * gnu/system/examples/bare-bones.tmpl: Likewise. * gnu/system/examples/beaglebone-black.tmpl: Likewise. * gnu/system/examples/desktop.tmpl: Likewise. * gnu/system/examples/docker-image.tmpl: Likewise. * gnu/system/examples/lightweight-desktop.tmpl: Likewise. * gnu/system/install.scm (installation-os): Likewise. * gnu/tests.scm (%simple-os): Likewise. * gnu/tests/install.scm (%minimal-os, %minimal-os-on-vda): (%separate-home-os, %encrypted-root-os, %btrfs-root-os): Likewise. * tests/accounts.scm ("allocate-passwd") ("allocate-passwd with previous state"): Likewise. Ludovic Courtès
2019-03-25records: Allow thunked fields to refer to 'this-record'....* guix/records.scm (this-record): New syntax parameter. (make-syntactic-constructor)[wrap-field-value]: When F is thunked, return a one-argument lambda instead of a thunk, and parameterize THIS-RECORD. (define-record-type*)[thunked-field-accessor-definition]: Pass X to (real-get X). * tests/records.scm ("define-record-type* & thunked & this-record") ("define-record-type* & thunked & default & this-record") ("define-record-type* & thunked & inherit & this-record"): New tests. Ludovic Courtès
2019-03-25installer: Set the system's 'keyboard-layout' field....* gnu/installer/newt/keymap.scm (keyboard-layout->configuration): New procedure. * gnu/installer.scm (compute-keymap-step): Return RESULT. (installer-steps) <'keymap>: Add 'configuration-formatter' field. (installer-program): Use (gnu installer newt keymap). * gnu/installer/parted.scm (bootloader-configuration): Set 'keyboard-layout'. Ludovic Courtès
2019-03-25gnu: guix: Update to f970946....* gnu/packages/package-management.scm (guix): Update to f970946. Ludovic Courtès
2019-03-25gnu: docker: Use fewer modprobes....Fixes <https://bugs.gnu.org/34333>. Reported by Allan Adair <allan@adair.io>. * gnu/packages/patches/docker-use-fewer-modprobes.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/docker.scm (docker)[source]: Use it. Danny Milosavljevic
2019-03-25gnu: nano: Update to 4.0....* gnu/packages/nano.scm (nano): Update to 4.0. Leo Famulari
2019-03-25services: SDDM: Specify absolute path to the X server....I'm not sure how this service ever worked, but SDDM started consistently failing on one machine seemingly because of this setting. * gnu/services/sddm.scm (sddm-configuration-file): Append /bin/X to the ServerPath setting. Marius Bakke
2019-03-25gnu: Add r-svmisc....* gnu/packages/cran.scm (r-svmisc): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-rjava....* gnu/packages/cran.scm (r-rjava): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-r2html....* gnu/packages/cran.scm (r-r2html): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-sampling....* gnu/packages/cran.scm (r-sampling): New variable. Ricardo Wurmus
2019-03-25gnu: r-gsl: Update to 2.1-6....* gnu/packages/cran.scm (r-gsl): Update to 2.1-6. Ricardo Wurmus
2019-03-25gnu: Add r-sigpathway....* gnu/packages/bioconductor.scm (r-sigpathway): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-anota....* gnu/packages/bioconductor.scm (r-anota): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-gosemsim....* gnu/packages/bioconductor.scm (r-gosemsim): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-heatplus....* gnu/packages/bioconductor.scm (r-heatplus): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-varianttools....* gnu/packages/bioconductor.scm (r-varianttools): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-triform....* gnu/packages/bioconductor.scm (r-triform): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-hapassoc....* gnu/packages/cran.scm (r-hapassoc): New variable. Ricardo Wurmus
2019-03-25gnu: Add r-hierfstat....* gnu/packages/cran.scm (r-hierfstat): New variable. Ricardo Wurmus
2019-03-25gnu: Add brightnessctl....* gnu/packages/linux.scm (brightnessctl): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Vagrant Cascadian