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2018-11-07gnu: r-roxygen2: Update to 6.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-roxygen2): Update to 6.1.1.
2018-11-07gnu: r-survival: Update to 2.43-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 2.43-1.
2018-11-07gnu: r-matrix: Update to 1.2-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-15.
2018-11-07gnu: r-lattice: Update to 0.20-38.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lattice): Update to 0.20-38.
2018-11-07gnu: r-mass: Update to 7.3-51.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.1.
2018-11-07gnu: r-pander: Update to 0.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-pander): Update to 0.6.3.
2018-11-07gnu: r-rcmdcheck: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcmdcheck): Update to 1.3.1. [propagated-inputs]: Add r-sessioninfo.
2018-11-07gnu: r-remotes: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-remotes): Update to 2.0.2.
2018-11-07gnu: r-sessioninfo: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sessioninfo): Update to 1.1.1.
2018-11-07gnu: r-flextable: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.4.6.
2018-11-07gnu: r-sjmisc: Update to 2.7.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.7.6. [propagated-inputs]: Remove r-pillar, r-tibble, and r-tidyselect.
2018-11-07gnu: r-xts: Update to 0.11-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts): Update to 0.11-2.
2018-11-07gnu: r-psych: Update to 1.8.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 1.8.10.
2018-11-07gnu: r-ipred: Update to 0.9-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ipred): Update to 0.9-8.
2018-11-07gnu: r-ffbase: Update to 0.12.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ffbase): Update to 0.12.7.
2018-11-07gnu: r-pkgload: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-pkgload): Update to 1.0.2.
2018-11-07gnu: r-ps: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.2.1.
2018-11-07gnu: r-rgraphviz: Update to 2.26.0.Ricardo Wurmus
* gnu/packages/graph.scm (r-rgraphviz): Update to 2.26.0.
2018-11-07gnu: Add hdf5-1.10.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5-1.10): New variable.
2018-11-07gnu: r-regioner: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.14.0. [propagated-inputs]: Add r-biostrings.
2018-11-07gnu: r-ruvseq: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ruvseq): Update to 1.16.0.
2018-11-07gnu: Add r-biocneighbors.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
2018-11-07gnu: r-dnabarcodes: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dnabarcodes): Update to 1.12.0.
2018-11-07gnu: r-inspect: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.12.0.
2018-11-07gnu: r-rots: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rots): Update to 1.10.0.
2018-11-07gnu: r-glimma: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-glimma): Update to 1.10.0.
2018-11-07gnu: r-goseq: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-goseq): Update to 1.34.0.
2018-11-07gnu: r-ctc: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ctc): Update to 1.56.0.
2018-11-07gnu: r-genomicinteractions: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicinteractions): Update to 1.16.0.
2018-11-07gnu: r-interactionset: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-interactionset): Update to 1.10.0.
2018-11-07gnu: r-riboseqr: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboseqr): Update to 1.16.0.
2018-11-07gnu: r-riboprofiling: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-riboprofiling): Update to 1.12.0.
2018-11-07gnu: r-ripseeker: Update to 1.22.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ripseeker): Update to 1.22.0.
2018-11-07gnu: r-chipcomp: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipcomp): Update to 1.12.0.
2018-11-07gnu: r-bayseq: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bayseq): Update to 2.16.0.
2018-11-07gnu: r-chippeakanno: Update to 3.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.16.0. [propagated-inputs]: Remove r-biocinstaller; add r-biocmanager.
2018-11-07gnu: r-graph: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-graph): Update to 1.60.0.
2018-11-07gnu: r-multtest: Update to 2.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multtest): Update to 2.38.0.
2018-11-07gnu: r-qdnaseq: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-qdnaseq): Update to 1.18.0.
2018-11-07gnu: r-cghcall: Update to 2.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cghcall): Update to 2.44.0.
2018-11-07gnu: r-cghbase: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cghbase): Update to 1.42.0.
2018-11-07gnu: r-marray: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-marray): Update to 1.60.0.
2018-11-07gnu: r-diffbind: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 2.10.0.
2018-11-07gnu: r-hpar: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hpar): Update to 1.24.0.
2018-11-07gnu: Add r-biocmanager.Ricardo Wurmus
* gnu/packages/cran.scm (r-biocmanager): New variable.
2018-11-07gnu: Add r-ncdf4.Ricardo Wurmus
* gnu/packages/cran.scm (r-ncdf4): New variable.
2018-11-07gnu: Add r-rcppannoy.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppannoy): New variable.
2018-11-07gnu: slang: Use a correct location for terminfo dirs.Mathieu Othacehe
As termcap is disabled and no terminfo directory is given, slang is not able to query terminal capabilities. Specifying a correct path for terminfo will automatically disable termcap support in the configuration. * gnu/packages/slang.scm (slang)[source]: Remove the snippet disabling termcap. [arguments]: Set MISC_TERMINFO_DIRS to a correct location.
2018-11-07gnu: terminals: Change libtsm and kmscon repositories.Mathieu Othacehe
Those two packages (from the same author) are no longer maintained and do not even compile. Switch to a fork that is maintained even if it does not have any release yet. * gnu/packages/terminals.scm (libtsm)[origin]: Use "https://github.com/Aetf/libtsm" as new origin and switch to git-fetch method. (kmscon)[origin]: Use "https://github.com/Aetf/kmscon" as new origin and switch to git-fetch method.
2018-11-07services: kmscon: Add an auto-login option.Mathieu Othacehe
Add an auto-login option that behaves as the one of mingetty-service. * gnu/services/base.scm (kmscon-configuration)[auto-login]: New field. (kmscon-service-type): Pass it to kmscon command. * doc/guix.texi (Base Services): Document it.
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