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2019-03-07gnu: r-openssl: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 1.2.2.
2019-03-07gnu: r-catools: Update to 1.17.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-catools): Update to 1.17.1.2.
2019-03-07gnu: r-xml: Update to 3.98-1.19.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.19.
2019-03-07gnu: r-flexmix: Update to 2.3-15.Ricardo Wurmus
* gnu/packages/statistics.scm (r-flexmix): Update to 2.3-15.
2019-03-07gnu: r-irlba: Update to 2.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-irlba): Update to 2.3.3.
2019-03-07gnu: r-registry: Update to 0.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-registry): Update to 0.5-1.
2019-03-07gnu: r-r-utils: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-utils): Update to 2.8.0.
2019-03-07gnu: r-r-rsp: Update to 0.43.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-r-rsp): Update to 0.43.1.
2019-03-07gnu: r-mvtnorm: Update to 1.0-10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-10.
2019-03-07gnu: r-tidyr: Update to 0.8.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tidyr): Update to 0.8.3.
2019-03-07gnu: r-purrr: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.3.1.
2019-03-07gnu: r-pbapply: Update to 1.4-0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pbapply): Update to 1.4-0.
2019-03-07gnu: r-vgam: Update to 1.1-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-vgam): Update to 1.1-1.
2019-03-07gnu: r-ggthemes: Update to 4.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.1.0.
2019-03-07gnu: r-shiny: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-shiny): Update to 1.2.0. [arguments]: Adjust processing of minified JavaScript.
2019-03-07gnu: r-epi: Update to 2.35.Ricardo Wurmus
* gnu/packages/cran.scm (r-epi): Update to 2.35.
2019-03-07gnu: r-network: Update to 1.14-377.Ricardo Wurmus
* gnu/packages/cran.scm (r-network): Update to 1.14-377. [propagated-inputs]: Add r-magrittr and r-tibble.
2019-03-07gnu: r-vegan: Update to 2.5-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-vegan): Update to 2.5-4.
2019-03-07gnu: r-future-apply: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future-apply): Update to 1.2.0.
2019-03-07gnu: Add r-furrr.Ricardo Wurmus
* gnu/packages/cran.scm (r-furrr): New variable.
2019-03-07gnu: Add r-survey.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey): New variable.
2019-03-07gnu: Add r-magick.Ricardo Wurmus
* gnu/packages/cran.scm (r-magick): New variable.
2019-03-07gnu: Add r-ellipsis.Ricardo Wurmus
* gnu/packages/cran.scm (r-ellipsis): New variable.
2019-03-07gnu: Add autorandr.Pierre Neidhardt
* gnu/packages/xdisorg.scm (autorandr): New variable.
2019-03-07gnu: php: Update to 7.3.3.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.3.3.
2019-03-07gnu: libmicrohttpd: Enable parallel tests.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd)[arguments]: Don't disable parallel tests.
2019-03-07gnu: libmicrohttpd: Update to 0.9.63.Efraim Flashner
* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.63. [arguments]: Remove custom phase to add missing LDFLAGS.
2019-03-07gnu: c-graph: Update to 2.0.1.Efraim Flashner
* gnu/packages/maths.scm (c-graph): Update to 2.0.1.
2019-03-07activation: Build account databases with (gnu build accounts).Ludovic Courtès
* gnu/build/activation.scm (enumerate, current-users, current-groups) (add-group, add-user, modify-user, ensure-user): Remove. (activate-users+groups)[touch, activate-user]: Remove. [make-home-directory]: New procedure. Rewrite in terms of 'user+group-databases', 'write-group', etc. * gnu/build/install.scm (directives): Remove "/root". * gnu/system/shadow.scm (account-activation): Remove (setenv "PATH" ...) expression, which is now unneeded.
2019-03-07Add (gnu build accounts).Ludovic Courtès
* gnu/build/accounts.scm, tests/accounts.scm: New files. * Makefile.am (SCM_TESTS): Add tests/accounts.scm. * gnu/local.mk (GNU_SYSTEM_MODULES): Add build/accounts.scm.
2019-03-07activation: Operate on <user-account> and <user-group> records.Ludovic Courtès
* gnu/system/accounts.scm (sexp->user-group, sexp->user-account): New procedures. * gnu/system/shadow.scm (account-activation): Call them in the arguments to 'activate-users+groups'. (account-shepherd-service): Likewise. * gnu/build/activation.scm (activate-users+groups): Expect a list of <user-account> and a list of <user-group>. Replace uses of 'match' on tuples with calls to record accessors. (activate-user-home): Likewise.
2019-03-07system: Add (gnu system accounts).Ludovic Courtès
The (gnu system accounts) module is meant to be used both on the build- and on the host-side. * gnu/system/shadow.scm <top level>: Call 'default-shell'. (<user-account>, <user-group>): Move to... * gnu/system/accounts.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add system/accounts.scm.
2019-03-07gnu: fuseiso: Fix typo in description.Pierre Neidhardt
* gnu/packages/linux.scm (fuseiso)[description]: Fix typo.
2019-03-07gnu: Add nullmailer.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (nullmailer): New public variable.
2019-03-07gnu: neovim: Let build phase return #T.Ricardo Wurmus
* gnu/packages/vim.scm (neovim)[arguments]: Return #T from "patch-tic" phase.
2019-03-07gnu: cd-hit: Support longer sequences.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make flags.
2019-03-07gnu: python2-fastlmm: Disable tests.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python2-fastlmm)[arguments]: Disable tests.
2019-03-07gnu: wireguard: Update to 0.0.20190227.Rutger Helling
* gnu/packages/vpn.scm (wireguard): Update to 0.0.20190227. [arguments]: Disable tests.
2019-03-07gnu: nftables: Update to 0.9.0.Rutger Helling
* gnu/packages/linux.scm (nftables): Update to 0.9.0. [arguments]: Add "--disable-man-doc" configure flag.
2019-03-07gnu: minetest: Update to 5.0.0.Kei Kebreau
* gnu/packages/games.scm (minetest-data, minetest): Update to 5.0.0.
2019-03-07gnu: neovim: Fix #34616.Gábor Boskovits
This fixes a segmentation fault in neovim, where an error return value is passed in as a pointer. * gnu/packages/vim.scm (neovim)[arguments](phases): Add 'patch-tic phase.
2019-03-07gnu: unibilium: Update to 2.0.0.Gábor Boskovits
* gnu/packages/terminal.scm (unibilium): Update to 2.0.0. [native-inputs]: Add perl.
2019-03-07gnu: sane-backends-minimal: Fix USB support.Tobias Geerinckx-Rice
* gnu/packages/scanner.scm (sane-backends-minimal)[inputs]: Replace libusb-compat with libusb. [arguments]: Disable tests that require USB access.
2019-03-07pack: Add '--save-provenance'.Ludovic Courtès
* guix/scripts/pack.scm (show-help, %options): Add '--save-provenance'. (guix-pack)[manifest-from-args]: Honor it. * doc/guix.texi (Invoking guix pack): Document it.
2019-03-07describe: Add 'package-provenance'.Ludovic Courtès
* guix/scripts/package.scm (package-provenance): Move to... * guix/describe.scm (package-provenance): ... here.
2019-03-07database: Make 'register-items' transactional.Caleb Ristvedt
* guix/store/database.scm (SQLITE_BUSY, register-output-sql): New variables. (add-references): Don't try finalizing after each use, only after all the uses (otherwise a finalized statement would be used if #:cache? was #f). (call-with-transaction): New procedure. (register-items): Use call-with-transaction to prevent broken intermediate states from being visible. * .dir-locals.el (call-with-transaction): indent it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-03-06gnu: linux-libre: Update to 5.0.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0. (%linux-libre-hash): Update hash. (%linux-libre-4.20-patches): Rename to ... (%linux-libre-5.0-patches): ... this. (linux-libre, linux-libre-arm-generic, linux-libre-arm-omap2plus): Use %linux-libre-5.0-patches instead of %linux-libre-4.20-patches. * gnu/packages/aux-files/linux-libre/4.20-arm.conf, gnu/packages/aux-files/linux-libre/4.20-arm64.conf, gnu/packages/aux-files/linux-libre/4.20-i686.conf, gnu/packages/aux-files/linux-libre/4.20-x86_64.conf: Delete files. * gnu/packages/aux-files/linux-libre/5.0-arm.conf, gnu/packages/aux-files/linux-libre/5.0-arm64.conf, gnu/packages/aux-files/linux-libre/5.0-i686.conf, gnu/packages/aux-files/linux-libre/5.0-x86_64.conf: New files. * Makefile.am (AUX_FILES): Adjust accordingly.
2019-03-06gnu: linux-libre@4.19: Update to 4.19.27.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.27. (%linux-libre-4.19-hash): Update hash.
2019-03-06gnu: linux-libre@4.14: Update to 4.14.105.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.105. (%linux-libre-4.14-hash): Update hash.
2019-03-06gnu: linux-libre@4.9: Update to 4.9.162.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.162.
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