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2018-10-20gnu: python-pybedtools: Update to 0.7.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python2-pybedtools): Update to 0.7.10. [arguments]: Disable broken tests. [propagated-inputs]: Replace bedtools with bedtools-2.26; add python-matplotlib, python-pysam, and python-pyyaml. [native-inputs]: Remove python-pyyaml; add kentutils, python-numpy, python-pandas, and python-six. (python-pybedtools): New variable.
2018-10-20gnu: Add bedtools-2.26.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools-2.26): New variable.
2018-10-20gnu: cataclysm-dda: Update snapshot.Kei Kebreau
* gnu/packages/games.scm (cataclysm-dda): Update snapshot to 0b2c194e5.
2018-10-20gnu: maxima: Update to 5.42.0.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-20gnu: python-glances: Update to 3.0.2.Oleg Pykhalov
* gnu/packages/python.scm (python-glances): Update to 3.0.2.
2018-10-20gnu: emacs-hy-mode: Update to 1.0.3.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-hy-mode): Update to 1.0.3.
2018-10-20gnu: emacs-erc-hl-nicks: Update to 1.3.3.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-erc-hl-nicks): Update to 1.3.3.
2018-10-20gnu: emacs-yasnippet: Update to 0.13.0.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-yasnippet): Update to 0.13.0.
2018-10-20gnu: emacs-nginx-mode: Update to 1.1.9.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-nginx-mode): Update to 1.1.9.
2018-10-20gnu: emacs-rainbow-mode: Update to 1.0.1.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-rainbow-mode): Update to 1.0.1.
2018-10-20gnu: emacs-smart-mode-line: Update to 2.12.0.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-smart-mode-line): Update to 2.12.0.
2018-10-20gnu: emacs-fill-column-indicator: Update to 1.89.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-fill-column-indicator): Update to 1.89.
2018-10-20gnu: emacs-ggtags: Update to 0.8.13.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-ggtags): Update to 0.8.13.
2018-10-20gnu: emacs-which-key: Update to 3.3.0.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-which-key): Update to 3.3.0.
2018-10-20gnu: Add soundconverter.Christopher Baines
* gnu/packages/gnome.scm (soundconverter): New variable. * gnu/packages/patches/soundconverter-remove-gconf-dependency.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-10-19gnu: Add enchive.nixo
* gnu/packages/crypto.scm (enchive): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19services: ntp: Document 'ntp-service-type' and 'ntp-configuration'.Ludovic Courtès
* gnu/services/networking.scm (<ntp-configuration>)[servers]: Add default value. (ntp-service-type)[default-value]: New field. (ntp-service): Mark as deprecated. * gnu/services/desktop.scm (%desktop-services): Use (service ntp-service-type) instead of calling 'ntp-service'. * doc/guix.texi (Networking Services): Document 'ntp-service-type' and 'ntp-configuration'.
2018-10-19gnu: Add i3blocks.Meiyo Peng
* gnu/packages/wm.scm (i3blocks): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19gnu: qsynth: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/audio.scm (qsynth): Update to 0.5.3.
2018-10-19gnu: sbcl-slime-swank: Remove reference to unbound variable.Ludovic Courtès
Fixes a regression introduced in commit c4d4ae1e16254a96caaeb5ccb4486f301ae4f1b7. * gnu/packages/lisp.scm (sbcl-slime-swank)[license]: Remove extra 'license'.
2018-10-19gnu: guile-wiredtiger: Update to 0.7.0.Amirouche
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0. [inputs]: Replace wiredtiger with wiredtiger-3 [propagated-inputs]: Remove guile-lib, add guile-bytestructures [description]: Update it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19gnu: Add wiredtiger 3.1.0Amirouche
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from wiredtiger Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19tests: Run 'guix pack' tests using the external store.Ludovic Courtès
Fixes <https://bugs.gnu.org/32184>. * guix/tests.scm (call-with-external-store): New procedure. (with-external-store): New macro. * tests/pack.scm (%store): Remove. (test-assertm): Add 'store' parameter. ("self-contained-tarball"): Wrap in 'with-external-store'. * tests/guix-pack.sh: Connect to the external store, if possible, by setting NIX_STORE_DIR and GUIX_DAEMON_SOCKET. Remove most uses of '--bootstrap'.
2018-10-19pack: Fix "-C none -f tarball".Ludovic Courtès
Fixes a regression introduced in 48b444304e206c35cf2c8e0d87a4711f1aac4fd4 whereby "guix pack -C none hello" would fail with: ERROR: In procedure string-join: In procedure string-join: Wrong type argument in position 1: #f builder for `/gnu/store/…-tarball-pack.tar.drv' failed with exit code 1 * guix/scripts/pack.scm (self-contained-tarball): Adjust for when 'compressor-command' returns #f.
2018-10-19gnu: emacs-slime: License is a mix of GPL2+ and public domain.Pierre Neidhardt
* gnu/packages/emacs.scm (emacs-slime)[license]: Update to (gpl2+ public-domain)
2018-10-19gnu: Add lparallel.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-lparallel, ecl-lparallel, sbcl-lparallel): New variables.
2018-10-19gnu: Add sbcl-cl-webkit.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-webkit): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-gdk.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-gdk-pixbuf.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gdk-pixbuf): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-pango.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-pango): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-cairo.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-cairo): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-gio.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gio): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-gobject.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-gobject): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk-glib.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk-glib): New variable.
2018-10-19gnu: Add sbcl-cl-cffi-gtk.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-cffi-gtk): New variable.
2018-10-19gnu: Add closer-mop.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-closer-mop, ecl-closer-mop, sbcl-closer-mop): New variables.
2018-10-19gnu: Add trivial-garbage.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-trivial-garbage, ecl-trivial-garbage, sbcl-trivial-garbage): New variables.
2018-10-19gnu: Add cl-unix-opts.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-unix-opts, ecl-unix-opts, sbcl-unix-opts): New variables.
2018-10-19gnu: Add cl-json.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-json, ecl-cl-json, sbcl-cl-json): New variables.
2018-10-19gnu: Add parenscript.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-parenscript, ecl-parenscript, sbcl-parenscript): New variables.
2018-10-19gnu: Add sbcl-cl-sqlite.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cl-sqlite): New variable.
2018-10-19gnu: Add sbcl-cffi.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cffi): New variable.
2018-10-19gnu: Add sbcl-cffi-grovel.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cffi-grovel): New variable.
2018-10-19gnu: Add sbcl-cffi-libffi.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cffi-libffi): New variable.
2018-10-19gnu: Add sbcl-cffi-toolchain.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cffi-toolchain): New variable.
2018-10-19gnu: Add sbcl-cffi-bootstrap.Pierre Neidhardt
* gnu/packages/lisp.scm (sbcl-cffi-bootstrap): New variable.
2018-10-19gnu: Add queues.priority-cqueue.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-queues.priority-cqueue, ecl-queues.priority-cqueue, sbcl-queues.priority-cqueue): New variables.
2018-10-19gnu: Add queues.priority-queue.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-queues.priority-queue, ecl-queues.priority-queue, sbcl-queues.priority-queue): New variables.
2018-10-19gnu: Add queues.simple-cqueue.Pierre Neidhardt
* gnu/packages/lisp.scm (cl-queues.simple-cqueue, ecl-queues.simple-cqueue, sbcl-queues.simple-cqueue): New variables.
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