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2023-04-25gnu: lcov: Update to 1.16.Ludovic Courtès
* gnu/packages/code.scm (lcov): Update to 1.16.
2023-04-25gnu: perl-io-compress: Update to 2.204.Ludovic Courtès
* gnu/packages/perl-compression.scm (perl-io-compress): Update to 2.204.
2023-04-25gnu: perl-compress-raw-bzip2: Update to 2.204.Ludovic Courtès
* gnu/packages/perl-compression.scm (perl-compress-raw-bzip2): Update to 2.204.
2023-04-25gnu: perl-compress-raw-zlib: Update to 2.204.Ludovic Courtès
* gnu/packages/perl-compression.scm (perl-compress-raw-zlib): Update to 2.204. [arguments]: Remove.
2023-04-25gnu: gnutls: Don't embed a phase inside another phase.Efraim Flashner
* gnu/packages/tls.scm (gnutls)[arguments]: Adjust powerpc-linux phase 'increase-test-timeout to not be embedded inside another phase.
2023-04-25gnu: mpdevil: Add missing input.Efraim Flashner
* gnu/packages/mpd.scm (mpdevil)[native-inputs]: Add gettext-minimal.
2023-04-25gnu: presage: Build with c++-14.Efraim Flashner
* gnu/packages/fcitx.scm (presage)[arguments]: Adjust configure-flags to use c++-14 cor CFLAGS and CXXFLAGS.
2023-04-25gnu: libpst: Fix python detection.Efraim Flashner
* gnu/packages/mail.scm (libpst)[arguments]: Add a phase to detect newer versions of python3. [native-inputs]: Add autoconf, automake, gettext-minimal, libool.
2023-04-25gnu: perl-data-dumper: Update to 2.183.Ricardo Wurmus
* gnu/packages/perl.scm (perl-data-dumper): Update to 2.183.
2023-04-25gnu: cwltool: Use pyproject-build-system.Ricardo Wurmus
"setup.py install is deprecated. Use build and pip and other standards-based tools." It then falls back to attempting to install packages via pip. * gnu/packages/bioinformatics.scm (cwltool)[build-system]: Use pyproject-build-system.
2023-04-25gnu: python-schema-salad: Use pyproject-build-system.Ricardo Wurmus
The python-build-system fails with "setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer." This, in turn, causes all Python packages to be ignored and "pip install" to be invoked for them. * gnu/packages/bioinformatics.scm (python-schema-salad)[build-system]: Use pyproject-build-system.
2023-04-25gnu: gfeeds: Add missing gettext-minimal.Liliana Marie Prikler
* gnu/packages/syndication.scm (gfeeds)[inputs]: Add gettext-minimal.
2023-04-25gnu: syndication-domination: Update to 1.0-1-7592032.Liliana Marie Prikler
* gnu/packages/syndication.scm (syndication-domination): Update to 1.0-1-7592032.
2023-04-25gnu: evolution: Update to 3.46.4.Liliana Marie Prikler
* gnu/packages/gnome.scm (evolution): Update to 3.46.4.
2023-04-25gnu: evolution-data-server: Update to 3.46.4.Liliana Marie Prikler
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.46.4.
2023-04-25gnu: adapterremoval: Update to 2.3.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (adapterremoval): Update to 2.3.3. [arguments]: Simplify. [inputs]: Reformat.
2023-04-25gnu: ocaml-lwt: Add ocaml4.07 variant.Efraim Flashner
* gnu/packages/ocaml.scm (ocaml-lwt)[properties]: New field. (ocaml4.07-lwt): New variable.
2023-04-25gnu: perl-crypt-openssl-rsa: Update to 0.33.Efraim Flashner
* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Update to 0.33.
2023-04-25gnu: bedtools-2.18: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Fix operators in 'compatibility phase.
2023-04-25gnu: hisat: Build with GCC 10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
2023-04-25gnu: kallisto: Update to 0.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0. [arguments]: Remove trailing #T from build phase.
2023-04-25gnu: bpp-core: Build with GCC 10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
2023-04-25gnu: vcflib: Update to 1.0.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9. [source]: Update snippet. [inputs]: Add curl, pybind11, and wfa2-lib. [arguments]: Adjust and reformat.
2023-04-25gnu: tabixpp: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2. [source]: Simplify snippet. [inputs]: Add curl. [arguments]: Simplify and reformat.
2023-04-25gnu: Add wfa2-lib.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
2023-04-25gnu: biber: Fix build with new Perl.Josselin Poiret
* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7. * gnu/packages/tex.scm (biber): Use it. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-25gnu: gcc: Do not build gcov on MinGW.Vivien Kraus
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when targetting mingw. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25gnu: nerd-dictation: Add package variants.Nicolas Graves
* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove. (nerd-dictation-gexp): New procedure. (nerd-dictation/xdotool, nerd-dictation/sox-xdotool) (nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25services: tor: Deprecate 'tor-hidden-service' procedure.Bruno Victal
Due to (now renamed) 'hidden-service' record type not being exported, the only way Onion services (formely hidden services) could have worked is through the now deprecated 'tor-hidden-service' procedure. This commit updates the Tor service documentation, corrects some inconsistently named accessors in <tor-configuration> record-type, renames and refactors tor-hidden-service-configuration to tor-onion-service-configuration using define-configuration and also exports it, allowing Onion services to be configured directly within a <tor-configuration> record. Lastly, it also deprecates the 'tor-hidden-service' procedure. * doc/guix.texi (Networking Services): Substitute mentions of “Hidden services” with “Onion Services”. Add a Tor Onion service configuration example. Document <tor-onion-service-configuration>. Remove mention of 'tor-hidden-service' procedure. * gnu/services/networking.scm: Export tor-configuration-tor, tor-configuration-config-file, tor-configuration-hidden-services, tor-configuration-socks-socket-type, tor-configuration-control-socket-path, tor-onion-service-configuration, tor-onion-service-configuration?, tor-onion-service-configuration-name, tor-onion-service-configuration-mapping. (<tor-configuration>)[control-socket?]: Rename accessor. (<hidden-service>): Replace with … (<tor-onion-service-configuration>): … this. (tor-configuration->torrc): Update record-type name. (tor-activation): Ditto. (tor-hidden-service-type): Remove variable. (tor-hidden-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25gnu: ghc-8.10: Avoid testsuite timeouts on i686.Lars-Dominik Braun
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase 'skip-failing-tests-i686-cuirass.
2023-04-25gnu: lofreq: Set file timestamps to 1980s.Ricardo Wurmus
This keeps Python from complaining: "ZIP does not support timestamps before 1980". * gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase 'set-source-file-times-to-1980.
2023-04-25gnu: lofreq: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
2023-04-25gnu: ivar: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2. [arguments]: Remove -Werror flag.
2023-04-25gnu: propeller-gcc-4: Use MODIFY-INPUTS.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use MODIFY-INPUTS and drop package label.
2023-04-25gnu: propeller-gcc-4: Use G-expression.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression because the parent GCC package uses them too.
2023-04-25gnu: trurl: Correct inputs.Andreas Enge
* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by curl, which is version 7.85.0.
2023-04-25Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-25gnu: python-asyncssh: Update to 2.13.1.Lars-Dominik Braun
Includes fix for python-cryptography>=39 disallowing SHA-1 signatures, which caused the testsuite to fail. * gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
2023-04-25gnu: alacritty: Patch reference to xdg-open.Efraim Flashner
* gnu/packages/terminals.scm (alacritty)[arguments]: Add a phase to add an absolute reference to xdg-open. [inputs]: Add xdg-utils.
2023-04-25gnu: emacs-eshell-syntax-highlighting: Update to 0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.5.
2023-04-25gnu: nethack: Update to 3.6.7.Nicolas Goaziou
* gnu/packages/games.scm (nethack): Update to 3.6.7.
2023-04-25gnu: Add trurl.Sharlatan Hellseher
* gnu/packages/curl.scm (trurl): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: emacs-auctex: Update to 13.2.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.0.
2023-04-25gnu: Add emacs-xonsh-mode.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-xonsh-mode): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: python-importlib-resources: Update to 5.12.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0. [build-system]: Use pyproject-build-system. [arguments]: Add phase to avoid "pip install". [native-inputs]: Remove python-toml; add python-flake8, python-pytest, python-pytest-black, python-pytest-checkdocs, python-pytest-cov, python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and python-setuptools-57. [propagated-inputs]: Add python-zipp.
2023-04-25gnu: guix-build-coordinator: Update to 0-79.6a4e827.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-79.6a4e827.
2023-04-25gnu: schismtracker: Update to 20221201.Antero Mejr
* gnu/packages/music.scm (schismtracker): Update to 20221201. [source]: Convert snippet to gexp. [arguments]: Convert to gexp, add configure flags for FLAC and Wayland support. [inputs]: Remove libx11, libxext, and sdl; add flac and sdl2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-25gnu: python-anyio: Upgrade to 3.6.2.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-anyio): Upgrade to 3.6.2.
2023-04-25Revert "gnu: python-pytest-trio: Update to 0.8.0."Lars-Dominik Braun
Not compatible with python-trio 0.8. This reverts commit 27a4bfbd07022ebabc352a419c7588fcfc881d88.
2023-04-25gnu: python-trio: Downgrade to 0.21.Lars-Dominik Braun
Version 0.22 deprecates MultiError, which trips up testsuites of dependents. python-anyio for instance is explicitly not compatible with >= 0.22, so stick to an older release. * gnu/packages/python-xyz.scm (python-trio): Downgrade to 0.21. [arguments]: Disable failing test.
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