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2018-03-03gnu: r-dbi: Update to 0.8....* gnu/packages/statistics.scm (r-dbi): Update to 0.8. Ricardo Wurmus
2018-03-03gnu: r-performanceanalytics: Update to 1.5.2....* gnu/packages/cran.scm (r-performanceanalytics): Update to 1.5.2. [propagated-inputs]: Add r-quadprog. [native-inputs]: Remove gfortran. Ricardo Wurmus
2018-03-03linux-initrd: Add virtio modules to '%base-initrd-modules'....Fixes a regression in installation tests, whereby 'guix system init' would report that virtio modules are missing for the target devices. In practice virtio modules were always available since 'base-initrd' was always called with #:virtio? #t. This commit simply moves them to '%base-initrd-modules' so that 'guix system' knows they're available. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#112>. * gnu/system/linux-initrd.scm (default-initrd-modules): Add virtio modules. (base-initrd): Remove #:virtio? and 'virtio-modules'. * gnu/system/vm.scm (expression->derivation-in-linux-vm) (system-qemu-image, virtualized-operating-system): Remove uses of #:virtio?. * doc/guix.texi (Initial RAM Disk): Update 'base-initrd' doc. Ludovic Courtès
2018-03-03system: beaglebone-black: Use 'initrd-modules'....* gnu/system/examples/beaglebone-black.tmpl: Use 'initrd-modules' instead of 'initrd'. Ludovic Courtès
2018-03-03vm: Add missing modules to the 'expression->derivation-in-linux-vm' initrd....Fixes a regression introduced in bc499b113a598c0e7863da9887a4133472985713, whereby the default initrd used by 'expression->derivation-in-linux-vm' would lack all the usual modules: virtio, nls_iso8859-1, etc. * gnu/system/vm.scm (expression->derivation-in-linux-vm): Pass #:linux-modules to 'base-initrd'. Ludovic Courtès
2018-03-03linux-initrd: 'file-system-modules' returns the right module list....Fixes a bug whereby, for an "iso9660" file system, it would return '("iso9660" "isofs"), i.e., both the key and the value. Reported by Danny Milosavljevic <dannym@scratchpost.org> at <https://debbugs.gnu.org/cgi/bugreport.cgi?bug=30629#115>. * gnu/system/linux-initrd.scm (lookup-procedure): 'vhash-assoc' returns a key/value pair; match it. Ludovic Courtès
2018-03-02gnu: cutadapt: Update to 1.16....* gnu/packages/bioinformatics.scm (cutadapt): Update to 1.16. [source]: Fetch via git. [arguments]: Remove. [native-inputs]: Replace python-nose with python-pytest. Ricardo Wurmus
2018-03-02gnu: python-xopen: Update to 0.3.2....* gnu/packages/python.scm (python-xopen): Update to 0.3.2. Ricardo Wurmus
2018-03-02gnu: Add r-hpar....* gnu/packages/bioconductor.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2018-03-02gnu: Add r-powerplus....* gnu/packages/cran.scm (r-powerplus): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-np....* gnu/packages/cran.scm (r-np): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-phontools....* gnu/packages/cran.scm (r-phontools): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-complexplus....* gnu/packages/cran.scm (r-complexplus): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-expm....* gnu/packages/cran.scm (r-expm): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-trend....* gnu/packages/cran.scm (r-trend): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-cubature....* gnu/packages/cran.scm (r-cubature): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-urca....* gnu/packages/cran.scm (r-urca): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-fractal....* gnu/packages/cran.scm (r-fractal): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-extradistr....* gnu/packages/cran.scm (r-extradistr): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-tsa....* gnu/packages/cran.scm (r-tsa): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-wmtsa....* gnu/packages/cran.scm (r-wmtsa): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-tseries....* gnu/packages/cran.scm (r-tseries): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-quantmod....* gnu/packages/cran.scm (r-quantmod): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-sapa....* gnu/packages/cran.scm (r-sapa): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-ifultools....* gnu/packages/cran.scm (r-ifultools): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-splus2r....* gnu/packages/cran.scm (r-splus2r): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-leaps....* gnu/packages/cran.scm (r-leaps): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-ttr....* gnu/packages/cran.scm (r-ttr): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-rbiofabric....* gnu/packages/graph.scm (r-rbiofabric): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-sna....* gnu/packages/cran.scm (r-sna): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-statnet-common....* gnu/packages/cran.scm (r-statnet-common): New variable. Ricardo Wurmus
2018-03-02gnu: Add r-network....* gnu/packages/cran.scm (r-network): New variable. Ricardo Wurmus
2018-03-02gnu: nghttp2: Update to 1.31.0....* gnu/packages/web.scm (nghttp2): Update to 1.31.0. Tobias Geerinckx-Rice
2018-03-02gnu: libpsl: Update to 0.20.1....* gnu/packages/web.scm (libpsl): Update to 0.20.1. Tobias Geerinckx-Rice
2018-03-02gnu: zerofree: Update to 1.1.1....* gnu/packages/linux.scm (zerofree): Update to 1.1.1. Tobias Geerinckx-Rice
2018-03-02gnu: python-webencodings: Fix typo in description....* gnu/packages/python-web.scm (python-webencodings)[description]: Fix typo. Tobias Geerinckx-Rice
2018-03-02gnu: delta: Remove redundant code....* gnu/packages/debug.scm (delta)[arguments]: Remove unneeded MKDIR-P calls. Tobias Geerinckx-Rice
2018-03-02gnu: perl-mozilla-ca: Update to 20180117....* gnu/packages/perl.scm (perl-mozilla-ca): Update to 20180117. Tobias Geerinckx-Rice
2018-03-02gnu: perl-test-harness: Update to 3.41....* gnu/packages/perl-check.scm (perl-test-harness): Update to 3.41. Tobias Geerinckx-Rice
2018-03-02gnu: highlight: Don't hard-code Lua version....* gnu/packages/pretty-print.scm (highlight)[arguments]: Construct the Lua prefix programatically instead of hard-coding it. Tobias Geerinckx-Rice
2018-03-02gnu: highlight: Update to 3.42....* gnu/packages/pretty-print.scm (highlight): Update to 3.42. Tobias Geerinckx-Rice
2018-03-02gnu: ghc-abstract-deque: Fix typos in description....* gnu/packages/haskell.scm (ghc-abstract-deque)[description]: Fix typos. Tobias Geerinckx-Rice
2018-03-02gnu: qscintilla: Use HTTPS home page....* gnu/packages/qt.scm (qscintilla)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-02gnu: fortify-headers: Update to 0.9....* gnu/packages/suckless.scm (fortify-headers): Update to 0.9. Tobias Geerinckx-Rice
2018-03-02gnu: fossil: Update phase style....* gnu/packages/version-control.scm (fossil)[arguments]: Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice
2018-03-02gnu: gnome-mpv: Update to 0.14....* gnu/packages/video.scm (gnome-mpv): Update to 0.14. Tobias Geerinckx-Rice
2018-03-02gnu: ath9k-htc-firmware: Use INSTALL-FILE....* gnu/packages/firmware.scm (ath9k-htc-firmware)[arguments]: Substitute INSTALL-FILE for COPY-FILE with MKDIR-P. Tobias Geerinckx-Rice
2018-03-02gnu: ovmf: Update phase style....* gnu/packages/firmware.scm (ovmf): Substitute INVOKE for SYSTEM* and end phases with #t. Tobias Geerinckx-Rice
2018-03-02gnu: ovmf: Use HTTPS home page....* gnu/packages/firmware.scm (ovmf)[home-page]: Use HTTPS. Tobias Geerinckx-Rice
2018-03-02gnu: b43-tools: Use HTTPS home page....* gnu/packages/firmware.scm (b43-tools)[home-page]: Use HTTPS. Tobias Geerinckx-Rice