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2018-09-05gnu: pigx-chipseq: Use latest version of Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace "ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and "ghc-pandoc-1" with "ghc-pandoc".
2018-09-05gnu: pigx-rnaseq: Use latest version of Pandoc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace "ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc", and "ghc-pandoc-1" with "ghc-pandoc".
2018-09-05gnu: r-rcas: Use standard version of ghc-pandoc-citeproc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rcas)[native-inputs]: Replace "ghc-pandoc-citeproc-with-pandoc-1" with "ghc-pandoc-citeproc".
2018-09-05gnu: r-modelmetrics: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-modelmetrics): Update to 1.2.0. [propagated-inputs]: Add r-data-table.
2018-09-05gnu: r-robustbase: Update to 0.93-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-robustbase): Update to 0.93-2.
2018-09-05gnu: r-rann: Update to 2.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rann): Update to 2.6.
2018-09-05gnu: r-ggthemes: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggthemes): Update to 4.0.1. [propagated-inputs]: Remove r-assertthat and r-colorspace; add r-purrr, r-stringr, and r-tibble.
2018-09-05gnu: r-ztable: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ztable): Update to 0.2.0. [propagated-inputs]: Add r-flextable, r-magrittr, r-moonbook, r-officer, r-rcolorbrewer, r-scales, and r-stringr.
2018-09-05gnu: r-zoo: Update to 1.8-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-zoo): Update to 1.8-3.
2018-09-05gnu: r-gtools: Update to 3.8.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools): Update to 3.8.1.
2018-09-05gnu: r-kernlab: Update to 0.9-27.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-kernlab): Update to 0.9-27.
2018-09-05gnu: r-adaptivesparsity: Update to 1.6.Ricardo Wurmus
* gnu/packages/machine-learning.scm (r-adaptivesparsity): Update to 1.6. [propagated-inputs]: Add r-mass and r-matrix.
2018-09-05gnu: r-codedepends: Move from cran to bioconductor.Ricardo Wurmus
* gnu/packages/cran.scm (r-codedepends): Move from here... * gnu/packages/bioconductor.scm (r-codedepends): ...to here.
2018-09-05gnu: r-graph: Move from bioinformatics to bioconductor.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-graph): Move from here... * gnu/packages/bioconductor.scm (r-graph): ...to here.
2018-09-05gnu: r-ggpubr: Update to 0.1.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggpubr): Update to 0.1.8. [propagated-inputs]: Add r-glue and r-polynom.
2018-09-05gnu: r-codedepends: Update to 0.6.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-codedepends): Update to 0.6.5. [propagated-inputs]: Add r-graph.
2018-09-05gnu: r-later: Update to 0.7.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-later): Update to 0.7.4.
2018-09-05gnu: r-maptools: Update to 0.9-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-maptools): Update to 0.9-3.
2018-09-05gnu: r-fnn: Update to 1.1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fnn): Update to 1.1.2.1.
2018-09-05gnu: r-heatmaply: Update to 0.15.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-heatmaply): Update to 0.15.2.
2018-09-05gnu: r-tsa: Update to 1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsa): Update to 1.2. [propagated-inputs]: Remove r-tseries.
2018-09-05gnu: r-statnet-common: Update to 4.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-statnet-common): Update to 4.1.4.
2018-09-05gnu: r-metap: Update to 1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-metap): Update to 1.0. [propagated-inputs]: Add r-rdpack.
2018-09-05gnu: r-tinytex: Update to 0.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.8.
2018-09-05gnu: r-pillar: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.3.0. [propagated-inputs]: Add r-fansi.
2018-09-05gnu: r-xts: Update to 0.11-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts): Update to 0.11-0. [native-inputs]: Remove.
2018-09-05gnu: r-mice: Update to 3.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): Update to 3.3.0.
2018-09-05gnu: r-pan: Update to 1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-pan): Update to 1.6.
2018-09-05gnu: r-jomo: Update to 2.6-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): Update to 2.6-4. [propagated-inputs]: Add r-ordinal.
2018-09-05gnu: Add r-ordinal.Ricardo Wurmus
* gnu/packages/cran.scm (r-ordinal): New variable.
2018-09-05gnu: Add r-ucminf.Ricardo Wurmus
* gnu/packages/cran.scm (r-ucminf): New variable.
2018-09-05gnu: r-broom: Update to 0.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.5.0. [propagated-inputs]: Add r-backports, r-dplyr, r-purrr, and r-tibble; remove r-plyr and r-psych.
2018-09-05gnu: r-ipred: Update to 0.9-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ipred): Update to 0.9-7.
2018-09-05gnu: r-pls: Update to 2.7-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-pls): Update to 2.7-0.
2018-09-05gnu: r-glue: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.3.0.
2018-09-05gnu: r-callr: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-callr): Update to 3.0.0. [propagated-inputs]: Add r-base64enc.
2018-09-05gnu: r-reprex: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-reprex): Update to 0.2.0. [propagated-inputs]: Add r-clipr, r-rlang, and r-withr.
2018-09-05gnu: r-reticulate: Update to 1.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): Update to 1.10.
2018-09-05gnu: r-doby: Update to 4.6-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-doby): Update to 4.6-2.
2018-09-05gnu: Add r-flextable.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): New variable.
2018-09-05gnu: r-rmarkdown: Use latest version of Pandoc.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown)[propagated-inputs]: Replace "ghc-pandoc-1" with "ghc-pandoc".
2018-09-05Revert "gnu: ghc-tasty: Update to 1.1.0.3."Ricardo Wurmus
This reverts commit 3ad6b8909025a8f4d3e1f1f5ea16bcd0cace557c.
2018-09-05Revert "gnu: ghc-base-compat: Update to 0.10.4."Ricardo Wurmus
This reverts commit 0fa2c552fcd5176b0484b77b7f7c94d82d46415e. We may not upgrade base-compat at this point because we haven't upgraded the default GHC yet.
2018-09-05gnu: Add r-moonbook.Ricardo Wurmus
* gnu/packages/cran.scm (r-moonbook): New variable.
2018-09-05gnu: Add r-nortest.Ricardo Wurmus
* gnu/packages/cran.scm (r-nortest): New variable.
2018-09-05gnu: Add r-sjmisc.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): New variable.
2018-09-05gnu: Add r-sjlabelled.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): New variable.
2018-09-05gnu: Add r-prediction.Ricardo Wurmus
* gnu/packages/cran.scm (r-prediction): New variable.
2018-09-05gnu: Add r-snakecase.Ricardo Wurmus
* gnu/packages/cran.scm (r-snakecase): New variable.
2018-09-05gnu: Add r-officer.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): New variable.
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