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2019-01-08gnu: Add lua5.2-expat....* gnu/packages/lua.scm (lua5.2-expat): New variable. (make-lua-expat): New procedure. (lua5.1-expat, lua5.2-expat): Call it. Clément Lassieur
2019-01-08gnu: criu: Update to 3.11....* gnu/packages/virtualization.scm (criu): Update to 3.11. [arguments]: Add custom phase to patch python calls. Efraim Flashner
2019-01-08gnu: criu: Fix building on armhf-linux....* gnu/packages/virtualization.scm (criu)[arguments]: Hardcode the arm version in the Makefile. Efraim Flashner
2019-01-08gnu: gajim-omemo: Update to 2.6.26....* gnu/packages/messaging.scm (gajim-omemo): Update to 2.6.26. Clément Lassieur
2019-01-08gnu: gajim: Update to 1.1.1....* gnu/packages/messaging.scm (gajim): Update to 1.1.1. [arguments]: Replace #:test-target with a 'check' phase. Clément Lassieur
2019-01-08gnu: tor: Update to 0.3.4.10....* gnu/packages/tor.scm (tor): Update to 0.3.4.10. Tobias Geerinckx-Rice
2019-01-08gnu: privoxy: Update to 3.0.28....* gnu/packages/tor.scm (privoxy): Update to 3.0.28. Tobias Geerinckx-Rice
2019-01-07gexp: 'gexp->script' does not emit load-path expression when unnecessary....This removes two elements from %LOAD-PATH and %LOAD-COMPILED-PATH of the 'guix' command and thus further reduces the number of 'stat' calls it makes. * guix/gexp.scm (load-path-expression): Return #f when MODULES and EXTENSIONS are both empty. (gexp->script): Don't emit anything when SET-LOAD-PATH is #f. Ludovic Courtès
2019-01-07self: Move all modules into a single directory....This halves the number of elements in %LOAD-PATH and %LOAD-COMPILED-PATH and halves the number of 'stat' calls as reported by: env -i $(type -P guix) build -e '(@ (gnu packages base) coreutils)' -nd * guix/self.scm (node-source+compiled, guile-module-union): New procedures. (guix-command): Remove 'compiled-modules' parameter. Remove 'source-directories' and 'object-directories' variables and add 'module-directory'. Change command so that it adds nothing but MODULE-DIRECTORY to %LOAD-PATH and %LOAD-COMPILED-PATH. (whole-package): Remove #:compiled-modules. Assume MODULES contains 'share/guile/site' and 'lib/guile' and adjust code accordingly. (compiled-guix): When PULL-VERSION is 1, use 'node-source+compiled' only. Remove #:compiled-modules argument to 'whole-package'. * guix/channels.scm (whole-package-for-legacy): Add 'module+compiled' and pass it to 'whole-package'. Ludovic Courtès
2019-01-07gnu: libnet: Update to 1.2-rc3....* gnu/packages/networking.scm (libnet): Update to 1.2-rc3. [source]: Use git-fetch. Rutger Helling
2019-01-07import: opam: Parse comments....* guix/import/opam.scm: Add comment support in parser. Julien Lepiller
2019-01-07gnu: ocaml-graph: Add upstream-name....* gnu/packages/ocaml.scm (ocaml-graph)[properties]: Add upstream-name. Julien Lepiller
2019-01-07import: opam: Add updater....* guix/import/opam.scm (%opam-updater): New variable. Julien Lepiller
2019-01-07import: opam: Add recursive option....* guix/script/import/opam.scm: Add recursive option. * guix/import/opam.scm (opam->guix-package): return two values. (opam-recursive-import): New variable. Julien Lepiller
2019-01-07gnu: Move coq packages from ocaml to coq....* gnu/packages/ocaml.scm (coq, proof-general, coq-flocq, coq-gappa, coq-mathcomp) (coq-coquelicot, coq-bignums, coq-interval): Move from here... * gnu/packages/coq.scm: ... to here. New file. Julien Lepiller
2019-01-07gnu: emacs-guix: Update to 0.5.1.1....* gnu/packages/emacs.scm (emacs-guix): Update to 0.5.1.1. Alex Kost
2019-01-07gnu: containerd: Update synopsis....* gnu/packages/docker.scm (containerd)[synopsis]: Modify. Danny Milosavljevic
2019-01-07gnu: containerd: Enable tests....* gnu/packages/docker.scm (containerd)[arguments]: Remove #:tests?. Danny Milosavljevic
2019-01-07gnu: Add missing use-module clause....This is a follow-up to 4e5b8f7215b8e0ae864b954cd511404098fd2840. * gnu/packages/docker.scm: Add missing use-module clause. Ricardo Wurmus
2019-01-07gnu: Add r-corpcor....* gnu/packages/cran.scm (r-corpcor): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-ddrtree....* gnu/packages/cran.scm (r-ddrtree): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-qlcmatrix....* gnu/packages/cran.scm (r-qlcmatrix): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-combinat....* gnu/packages/cran.scm (r-combinat): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-densityclust....* gnu/packages/cran.scm (r-densityclust): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-sparsesvd....* gnu/packages/cran.scm (r-sparsesvd): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-docopt....* gnu/packages/cran.scm (r-docopt): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-rvcheck....* gnu/packages/cran.scm (r-rvcheck): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-tidytree....* gnu/packages/cran.scm (r-tidytree): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-colorramps....* gnu/packages/cran.scm (r-colorramps): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-wordcloud....* gnu/packages/cran.scm (r-wordcloud): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-waveslim....* gnu/packages/cran.scm (r-waveslim): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-tiff....* gnu/packages/cran.scm (r-tiff): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-fftwtools....* gnu/packages/cran.scm (r-fftwtools): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-softimpute....* gnu/packages/cran.scm (r-softimpute): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-adgoftest....* gnu/packages/cran.scm (r-adgoftest): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-gsl....* gnu/packages/cran.scm (r-gsl): New variable. Ricardo Wurmus
2019-01-07gnu: Add r-stabledist....* gnu/packages/cran.scm (r-stabledist): New variable. Ricardo Wurmus
2019-01-07gnu: perl-lingua-translit: Update to 0.28....* gnu/packages/perl.scm (perl-lingua-translit): Update to 0.28. Efraim Flashner
2019-01-07gnu: Add containerd....* gnu/packages/docker.scm (containerd): New variable. Danny Milosavljevic
2019-01-07gnu: Add dummy linker for arm-elf....* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add case for arm-elf. Danny Milosavljevic
2019-01-07gnu: Move R packages from geo.scm to cran.scm....* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere, r-ggmap): Move from here... * gnu/packages/cran.scm: ...to here. Ricardo Wurmus
2019-01-07gnu: emacs-ess: Move to (gnu packages statistics)....* gnu/packages/emacs.scm (emacs-ess): Move from here... * gnu/packages/statistics.scm (emacs-ess): ...to here. Ricardo Wurmus
2019-01-07gnu: python-rpy2: Move to (gnu packages statistics)....* gnu/packages/python.scm (python-rpy2): Move from here... * gnu/packages/statistics.scm (python-rpy2): ...to here. Ricardo Wurmus
2019-01-07gnu: Remove reference to (gnu packages statistics)....* gnu/packages/web.scm: Remove obsolete use-module clause. Ricardo Wurmus
2019-01-07gnu: r-rmysql: Move from databases.scm to cran.scm...* gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here. Ricardo Wurmus
2019-01-07gnu: biber: Update to 2.12....* gnu/packages/tex.scm (biber): Update to 2.12. [source]: Use 'git-fetch'. Add patch. [inputs]: Add perl-file-slurper. Remove perl-file-slurp. * gnu/packages/patches/biber-fix-encoding-write.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Jelle Licht
2019-01-07gnu: r-feather: Move from serialization.scm to cran.scm....* gnu/packages/serialization.scm (r-feather): Move from here... * gnu/packages/cran.scm (r-feather): ...to here. Ricardo Wurmus
2019-01-07gnu: Fix top-level circular references between emacs.scm and llvm.scm....Previously, loading either of these two modules could fail somewhat non-deterministically because each top-level was referencing a variable defined by the other module's top-level. * gnu/packages/emacs.scm (package-elisp-from-package): Move to... * gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep private. Ludovic Courtès
2019-01-07gnu: perl-file-slurper: Update to 0.012....* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012. [native-inputs]: Add perl-test-warnings. Jelle Licht
2019-01-07gnu: Move R packages from web.scm to cran.scm....* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools, r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny, r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these from here... * gnu/packages/cran.scm: ...to here. Ricardo Wurmus