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2024-05-15gnu: python-pivy: Update to 0.6.8.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-pivy): Update to 0.6.8. Change-Id: I7375a8261bd24ae1c2f54c6889e1a39d6db93468 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: python-pivy: Fix build.Artyom V. Poptsov
"python-pivy" build fails when "soqt" is in the inputs (see <https://bugs.gentoo.org/920482>.) * gnu/packages/python-xyz.scm (python-pivy): Fix build. [inputs]: Remove "soqt". [arguments]: Use gexps. Change-Id: If332ccd42b3a373e7b4118f3bcbc3646e8b59d41 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: qgis: Update to 3.34.6.Nicolas Graves
* gnu/packages/geo.scm (qgis): Update to 3.34.6. [arguments]<#:phases>: Update failing tests list. [inputs]: Add draco, freexl, librttopo, minizip, pdal, qt3d-5. Change-Id: If453a6c7451a63ab7b03f3cd0f36aef844acfb15 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: qgis: Improve package style.Nicolas Graves
* gnu/packages/geo.scm (qgis)[arguments]<#:phases>: Extract ignored-tests to make them more readable. Re-indent. Change-Id: I2373bba49b9d21ff7dfa0014cf34fafa0e1f3175 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: qgis: Improve package style.Nicolas Graves
* gnu/packages/geo.scm (qgis)[arguments]: Use gexp. Change-Id: Ib72ae48ca0895109548e676c6da2d80ac2e1eca6 Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: gecode: Update to 6.2.0-1.f7f0d7c.Andreas Enge
* gnu/packages/maths.scm (gecode): Update to 6.2.0-1.f7f0d7c. Change-Id: I48b77da2957a08850215aa02a77a845052bf26f7
2024-05-15gnu: Add chuffed.Herman Rimm
* gnu/packages/maths.scm (chuffed): Add variable. Co-authored-by: Andreas Enge <andreas@enge.fr> Change-Id: I77fc1ceb9caa42833689fba771010aeb38443e5e
2024-05-15gnu: python-lazy-loader: Update to 0.4.Sharlatan Hellseher
This fixes python-scikit-image build failure as seen in <https://ci.guix.gnu.org/build/4357310/log/raw>. * gnu/packages/python-xyz.scm (python-lazy-loader): Update to 0.4. [native-inputs]: Remove python-pre-commit and python-pytest-cov; add python-numpy. Change-Id: Ie236fb30fd505fed1e07fd236403f9f456a37f29
2024-05-15gnu: Add draco.Vinicius Monego
* gnu/packages/compression.scm (draco): New variable. Change-Id: Ibba9180ac2ee176aa445684472fa7d34327f8ce5 Co-authored-by: Nicolas Graves <ngraves@ngraves.fr> Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: Add tinygltf.Vinicius Monego
* gnu/packages/graphics.scm (tinygltf): New variable. Change-Id: I749ced85142b8dd2ebbe916533f27bf6d167bbff Co-authored-by: Nicolas Graves <ngraves@ngraves.fr> Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2024-05-15gnu: pigx-rnaseq: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.1.1. Change-Id: I16db332e3559bed5b302f08bd85f31c6c40e9619
2024-05-14gnu: icecat: Update to 115.11.0-guix0-preview1 [security fixes].Mark H Weaver
Includes fixes for CVE-2024-4367, CVE-2024-4767, CVE-2024-4768, CVE-2024-4769, CVE-2024-4770, and CVE-2024-4777. * gnu/packages/gnuzilla.scm (%icecat-base-version, %icecat-build-id): Update. (icecat-source): Update gnuzilla commit, base version, and hashes.
2024-05-14gnu: kakoune: Update to 2024.05.09.Ashish SHUKLA
* gnu/packages/text-editors.scm (kakoune): Update to 2024.05.09. Change-Id: If6c1ea02304880d5ffa818e57f922f9d81c1bf5a Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-14gnu: yamagi-quake2: Update to 8.30.James Smith
* gnu/packages/games.scm (yamagi-quake2): Update to 8.30. Change-Id: I6be99f7a87112544f0d23033e2ee99b308762bd3 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-14gnu: guile-lib: Fix tests for Guile 2.2.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-lib)[source]: Add a patch that fixes tests for Guile 2.2. * gnu/packages/patches/guile-lib-fix-tests-for-guile2.2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add "guile-lib-fix-tests-for-guile2.2.patch". Change-Id: Ia340e1de57c56366f0ee9271687a89fb9e41bc2d Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-14gnu: guile-lib: Remove "strip" phase.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-lib) [arguments]: Remove "strip" phase. Change-Id: I6158bdb58555be4e84a2571a2a6e59eb23d39abf Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-14gnu: xpra: Update to 6.0.Andy Tai
* gnu/packages/xorg.scm (xpra): Update to 6.0. [inputs]: Add xxhash. [native-inputs]: Change python-cython to python-cython-3. * gnu/packages/patches/xpra-6.0-install_libs.patch: New file. * gnu/packages/patches/xpra-6.0-systemd-run.patch: New file. * gnu/packages/patches/xpra-5.0-install_libs.patch: Removed. * gnu/packages/patches/xpra-5.0-systemd-run.patch: Removed. * gnu/local.mk (dist_patch_DATA): Update accordingly Change-Id: Ic8ec98296220aebabb3d94951e11a3c957a8fcbc Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-14gnu: guix: Update to 1.4.0-20.37719d3.Christopher Baines
* gnu/packages/package-management.scm (guix): Update to 1.4.0-20.37719d3. Change-Id: Ib986456b9d5aebb2589cab2cb7fcd5fe4b5b9f37
2024-05-14gnu: Add emacs-helm-org-ql.Nicolas Graves via Guix-patches via
* gnu/packages/emacs-xyz.scm (emacs-helm-org-ql): New variable. (emacs-org-ql)[phases]: Add phase 'remove-helm-org-ql. [propagated-inputs]: Remove emacs-helm, emacs-helm-org. The author didn't mean to make the package depend on helm : "Note that Helm is not declared as a package dependency, so this does not cause Helm to be installed.", but the way we packaged it in Guix did. Split the extension into a separate dependency instead, this avoids 3 Mo to be propagated in a profile where it's not meant. Change-Id: I3537c0b08cfffac3d66b761173761a3806497358 Signed-off-by: Andrew Tropin <andrew@trop.in>
2024-05-14gnu: gnome-shell: Wrap screencast service.Dariqq
Adjust screencast such that GI_TYPELIB_PATH and GST_PLUGIN_SYSTEM_PATH refer to all required typelibs and GStreamer plugins. This alone is not enough to make the screencast function however -- a running pipewire service (e.g. via Guix Home) is also needed. * gnu/packages/gnome.scm (gnome-shell): [inputs]: Add gst-plugins-good and pipewire. [#:phases]<'wrap-programs>: Wrap org.gnome.Shell.Screencast. Change-Id: I2c31bf1bd92e281b86c57b06988c6a3793a58d40 Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2024-05-14gnu: renpy: Update to 8.3.0.Liliana Marie Prikler
* gnu/packages/game-development.scm (python-renpy): Update to 8.3.0.
2024-05-14gnu: python-pygame-sdl2: Update to 2.1.0+renpy8.3.0.Liliana Marie Prikler
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to 2.1.0+renpy8.3.0.
2024-05-14gnu: Add python-clintest.Liliana Marie Prikler
* gnu/packages/potassco.scm (python-clintest): New variable.
2024-05-13gnu: r-logspline: Update to 2.1.22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-logspline): Update to 2.1.22. Change-Id: I08b684ab0f5a429923f3163353ccf7e9339de627
2024-05-13gnu: r-tclust: Update to 2.0-4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tclust): Update to 2.0-4. Change-Id: I5d2cabd4fbbbb7e540cfe129bbeb5e0e2b9f7a84
2024-05-13gnu: r-estimability: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-estimability): Update to 1.5.1. Change-Id: I1e0e9508b48a178ef7a241b14c86141aea5189ef
2024-05-13gnu: r-paws-storage: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-storage): Update to 0.6.0. Change-Id: I30a9e0cf35bbee39a01f4a794df66b75a44d2977
2024-05-13gnu: r-paws-database: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-database): Update to 0.6.0. Change-Id: I006c62cba2953e81175a3ce030b25a623b02d958
2024-05-13gnu: r-paws-networking: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-networking): Update to 0.6.0. Change-Id: I01b39db5292b96bb8b6c18ef721c03a410b858b2
2024-05-13gnu: r-paws-machine-learning: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-machine-learning): Update to 0.6.0. Change-Id: Idb88c0ad3b57bdd6680042e55dce54b5330a5304
2024-05-13gnu: r-paws-analytics: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-analytics): Update to 0.6.0. Change-Id: I5113ccaf37f395775e3053f4b5f4fb4fdcb34636
2024-05-13gnu: r-paws-application-integration: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-application-integration): Update to 0.6.0. Change-Id: Ia11603af5ca15f71f52e8527da104e932f22c5ad
2024-05-13gnu: r-paws-end-user-computing: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-end-user-computing): Update to 0.6.0. Change-Id: Iee934acf9078935edc19cdd64055949663e5f6ec
2024-05-13gnu: r-paws-developer-tools: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-developer-tools): Update to 0.6.0. Change-Id: I76076854850e76162bb212a1298f3a9ef4b97bfc
2024-05-13gnu: r-paws-customer-engagement: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-paws-customer-engagement): Update to 0.6.0. Change-Id: Ib40afc8078d9771f602318d522be358e8b4d6bf9
2024-05-13gnu: r-seurat: Update to 5.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-seurat): Update to 5.1.0. Change-Id: I070c848853e26c3b8c031e92ef24f39b08962348
2024-05-13gnu: r-imager: Update to 1.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-imager): Update to 1.0.2. Change-Id: I678a384037c4c265d2a2b06f2b3b8013abb6d017
2024-05-13gnu: r-farver: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-farver): Update to 2.1.2. Change-Id: Ic73015b3cd86c9cbaceedf6a721db8d6fe825c6c
2024-05-13gnu: r-options: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-options): Update to 0.2.0. Change-Id: Ia011d3fb5295a58ea49396b090186beae2bab575
2024-05-13gnu: r-polspline: Update to 1.1.25.Ricardo Wurmus
* gnu/packages/cran.scm (r-polspline): Update to 1.1.25. Change-Id: I0fb7c7912036cff5fd56d577cf29a464e34a2775
2024-05-13gnu: r-qlcmatrix: Update to 0.9.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-qlcmatrix): Update to 0.9.8. [native-inputs]: Add r-knitr and r-rmarkdown. Change-Id: I08e55b72ffacf17b41c895801d6cbdad52658e6b
2024-05-13gnu: r-effectsize: Update to 0.8.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.8.8. Change-Id: I51270018adaf62fdbcb3e5ad73b99f618b346b9a
2024-05-13gnu: r-insight: Update to 0.19.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.19.11. Change-Id: I3cb8ef7e28309d542cb30d993264cc79811b8d59
2024-05-13gnu: cgit: Update to 1.2.3-3.dbadd85.Tomas Volf
* gnu/packages/version-control.scm (cgit): Update to 1.2.3-3.dbadd85. Change-Id: I41827d1d97f28be71af5532b554d6b7a5e1123cc Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-13gnu: fcitx5-configtool: Remove inputs label.Zheng Junjie
* gnu/packages/fcitx5.scm (fcitx5-configtool) [inputs]: Remove label. Change-Id: Ib45fbf71d5f2ffbac3285e388629b6cf0ca004fe Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-13gnu: fcitx5-configtool: Enable kcm support.Zheng Junjie
* gnu/packages/fcitx5.scm (fcitx5-configtool) [arguments]: Remove it. [inputs]: Add qtdeclarative, qtquickcontrols2, ki18n, kpackage, kdeclarative, kiconthemes, kcoreaddons, plasma-framework, kwindowsystem, kirigami, libxkbcommon. Change-Id: I43a43458232a5ad3c1d156c779359e356cbf98b8 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-13gnu: isc-dhcp: Add debianutils as an input.Alexey Abramov
dhclient provides a hook mechanism for users. In order to run these hooks, dhclient-script uses run-parts to run all the executable files found in requested directory. run-parts is part of debianutils packages. * gnu/packages/admin.scm (isc-dhcp)[inputs]: Add "debianutils" to provide access to run-parts. Signed-off-by: Christopher Baines <mail@cbaines.net> Change-Id: I2057881da57a6065d65d1de95e51ed1c8b19e15f
2024-05-13gnu: notmuch: Add sfsexp input.Fabio Natali
sfsexp is a C/C++ library for the manipulation (read, parse, modify, and create) of symbolic expressions. In an environment where sfsexp is available, Notmuch will compile with support for a S-expression-based query format. This commit is to add sfsexp as a Notmuch dependency and therefore to add S-exp support. * gnu/packages/mail.scm (notmuch)[native-inputs]: Add git-minimal/pinned. [inputs]: Add sfsexp. Change-Id: Ic3b4a30b2672ad690d66b283e9bdc8e2197f97a7 Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-13gnu: Add sfsexp.Fabio Natali
* gnu/packages/c.scm (sfsexp): New variable. Change-Id: Iabfbe10b4ad6134ae886a3d26487f881107b559c Signed-off-by: Christopher Baines <mail@cbaines.net>
2024-05-13store: Add with-store/non-blocking.Christopher Baines
For some applications, it's important to establish a non-blocking connection rather than just making the socket non-blocking after the connection is established. This is because there is I/O on the socket that will block during the handshake. I've noticed this blocking during the handshake causing issues in the build coordinator for example. This commit adds a new with-store variant to avoid changing the behaviour of with-store/open-connection to ensure that this change can't break anything that depends on the blocking nature of the socket. * guix/store.scm (open-unix-domain-socket, open-inet-socket): Take #:non-blocking? and use SOCK_NONBLOCK when calling socket if appropriate. (connect-to-daemon, open-connection, call-with-store): Take #:non-blocking? and pass it on. (with-store/non-blocking): New syntax rule. * .dir-locals.el (scheme-mode): Add entry for with-store/non-blocking. Change-Id: I8225762b78448bc1f7b698c8de5d736e13f577bf
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