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2021-05-31gnu: r-genomationdata: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomationdata): Move from here... * gnu/packages/bioconductor.scm (r-genomationdata): ...to here. [source]: Replace 'string-append' by 'bioconductor-uri' with 'experiment.
2021-05-31gnu: r-genomation: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomation): Move from here... * gnu/packages/bioconductor.scm (r-genomation): ...to here.
2021-05-31gnu: r-go-db: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-go-db): Move from here... * gnu/packages/bioconductor.scm (r-go-db): ...to here. [source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
2021-05-31gnu: r-seqpattern: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here... * gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
2021-05-31gnu: r-impute: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-impute): Move from here... * gnu/packages/bioconductor.scm (r-impute): ...to here.
2021-05-31gnu: r-samr: Move to (gnu packages bioconductor).zimoun
* gnu/packages/cran.scm (r-samr): Move from here... * gnu/packages/bioconductor.scm (r-samr): ...to here.
2021-05-31gnu: r-msnbase: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here... * gnu/packages/bioconductor.scm (r-msnbase): ...to here.
2021-05-31gnu: r-msnid: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-msnid): Move from here... * gnu/packages/bioconductor.scm (r-msnid): ...to here.
2021-05-31gnu: r-bsgenome: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-bsgenome): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome): ...to here.
2021-05-31gnu: r-topgo: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-topgo): Move from here... * gnu/packages/bioconductor.scm (r-topgo): ...to here.
2021-05-31gnu: r-genomicfeatures: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Move from here... * gnu/packages/bioconductor.scm (r-genomicfeatures): ...to here.
2021-05-31gnu: r-rtracklayer: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-rtracklayer): Move from here... * gnu/packages/bioconductor.scm (r-rtracklayer): ...to here.
2021-05-31gnu: r-genomicalignments: Move to (gnu packages bioconductor).zimoun
* gnu/packages/bioinformatics.scm (r-genomicalignments): Move from here... * gnu/packages/bioconductor.scm (r-genomicalignments): ...to here.
2021-05-31gnu: Add julia-prettytables.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-prettytables): New variable.
2021-05-31gnu: Add julia-formatting.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-formatting): New variable.
2021-05-31gnu: Add julia-typedtables.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-typedtables): New variable.
2021-05-31gnu: Add julia-weakrefstrings.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-weakrefstrings): New variable.
2021-05-31gnu: Add julia-pooledarrays.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-pooledarrays): New variable.
2021-05-31gnu: Add julia-indirectarrays.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-indirectarrays): New variable.
2021-05-31gnu: Add julia-rangearrays.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-rangearrays): New variable.
2021-05-31gnu: Add julia-graphics.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-graphics): New variable.
2021-05-31gnu: Add julia-mappedarrays.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-mappedarrays): New variable.
2021-05-31gnu: Add julia-tensorcore.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-tensorcore): New variable.
2021-05-31gnu: Add julia-quadmath.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-quadmath): New variable.
2021-05-31gnu: Add julia-mocking.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-mocking): New variable.
2021-05-31gnu: Add julia-exprtools.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-exprtools): New variable.
2021-05-31gnu: Add julia-optimtestproblems.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-optimtestproblems): New variable.
2021-05-31gnu: Add julia-matrixfactorizations.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-matrixfactorizations): New variable.
2021-05-31gnu: Add julia-arraylayouts.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-arraylayouts): New variable.
2021-05-31gnu: Add julia-statsapi.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-statsapi): New variable.
2021-05-31gnu: Add julia-tables.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-tables): New variable.
2021-05-31gnu: Add julia-missings.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-missings): New variable.
2021-05-31gnu: Add julia-queryoperators.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-queryoperators): New variable.
2021-05-31gnu: Add julia-tableshowutils.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-tableshowutils): New variable.
2021-05-31gnu: Add julia-datavalues.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-datavalues): New variable.
2021-05-31gnu: Add julia-tabletraits.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-tabletraits): New variable.
2021-05-31gnu: Add julia-iteratorinterfaceextensions.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-iteratorinterfaceextensions): New variable.
2021-05-31gnu: Add julia-datavalueinterfaces.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-datavalueinterfaces): New variable.
2021-05-31gnu: Add julia-dataapi.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-dataapi): New variable.
2021-05-31gnu: java-pep-adapter 2.1.23.Hartmut Goebel
* gnu/packages/pep.scm (java-pep-adapter): Update to 2.1.23. [source]: Switch to new git repo. [arguments]<make-flags>: Enable release-build, use new target names. [arguments]<phases>{fix-includes}: Remove phase. {pin-shared-lib-path}: Update file paths. {build-codegen}: New phase. {install}: Use "(install)". [native-inputs]: Add graphviz. [inputs]: Fix input util-linux.
2021-05-31gnu: python-pep-adapter: Update to 2.1.3.Hartmut Goebel
* gnu/packages/pep.scm (python-pep-adapter): Update to 2.1.3. [source]: Switch to new git repo. [arguments]<phases>{remove-wheel-requirement}: New phase. [native-inputs]: Add python-pytest and python-pytest-forked. [inputs]: Remove asn1c, add python-setuptools-scm. util-linux.
2021-05-31gnu: libpEpAdapter: Update to 2.1.21.Hartmut Goebel
* gnu/packages/pep.scm (libpEpAdapter): Update to 2.1.21. [source]: Swicht to new git repo. [arguments]<make-flags>: Enable release-build.
2021-05-31gnu: pep-engine: Update to 2.1.34.Hartmut Goebel
* gnu/packages/pep.scm (fdik-libetpan): Update to current development version. [source]: Switch to pep.foundation. (pep-engine): Update to 2.1.34. [source]: Switch to new git repo. [arguments]<make-flags>: Enable release-build. [inputs]: Use normal sequoia. * gnu/packages/sequoia.scm (sequoia4pEp): Remove variable.
2021-05-31gnu: yml2: Update to 2.7.0.Hartmut Goebel
* gnu/packages/pep.scm (yml2): Update to 2.7.0. [source]: Switch to new git repo.
2021-05-31gnu: Add python-pyflow.Roel Janssen
* gnu/packages/python-science.scm (python-pyflow): New variable.
2021-05-31gnu: Add python-google.Roel Janssen
* gnu/packages/python-web.scm (python-google): New variable.
2021-05-31gnu: gnuastro: Update to 0.15.Efraim Flashner
* gnu/packages/astronomy.scm (gnuastro): Update to 0.15.
2021-05-30doc: Add a note about networking requirements for SSH access to VMs.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/48739>. It may seem silly, but when not realizing this firsthand, it can be quite surprising and thus not obvious to troubleshoot. Thanks to Eric Brown for their insightful comments on the tracker. * doc/guix.texi (Running Guix in a VM): Add a note that networking support must be available in the Guix System operating system declaration used for the VM.
2021-05-30gnu: r-benchmarkmedata: Fix typo in description.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-benchmarkmedata)[description]: Fix typo.
2021-05-30doc: Fix typos.Tobias Geerinckx-Rice
* doc/contributing.texi (Translating Guix): Fix ‘runnig’ typo. Replace ‘target’ with ‘command’ to match the verb. Fix ‘refered’ and ‘formating’ too.
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