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2021-04-13services: postgresql: Use "/tmp" host directory....This is a follow-up of c311147bd16aa0e5746d9cbf31502f5fd61e470c. * gnu/services/databases.scm (<postgresql-role-configuration>)[host]: Set to "/tmp" which the default Postgresql socket directory. Mathieu Othacehe
2021-04-13services: mysql: Add extra-environment as configuration option....* gnu/services/databases.scm (mysql-configuration): Add extra-environment (mysql-service): Use #:log-file and #:environment-variables * doc/guix.texi: Document it. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at> methuselah-0
2021-04-13gnu: Add r-randomforestsrc....* gnu/packages/cran.scm (r-randomforestsrc): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2021-04-13nls: Add Slovak translation....* po/guix/LINGUAS: Add 'sk'. * po/guix/sk.po: New file. Julien Lepiller
2021-04-13gnu: openconnect-sso: Update to 0.7.2....* gnu/packages/vpn.scm (openconnect-sso): Update to 0.7.2. [arguments]: Remove 'adjust-package-version-requirements phase. Efraim Flashner
2021-04-13gnu: Add r-hmm....* gnu/packages/cran.scm (r-hmm): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Roel Janssen
2021-04-13gnu: python-tinycss2: Enable tests....* gnu/packages/python-web.scm (python-tinycss2)[source]: Fetch from git repository to include tests. [arguments]: Build from source with flit. [native-inputs]: Add python-flit, python-pytest, python-pytest-cov, python-pytest-flake8, and python-pytest-isort. Ricardo Wurmus
2021-04-13gnu: python-ipywidgets: Update to 7.6.3....* gnu/packages/python-xyz.scm (python-ipywidgets): Update to 7.6.3. [propagated-inputs]: Add python-ipython, python-jupyterlab-widgets, and python-nbformat. [native-inputs]: Remove python-nose; add python-mock and ptyhon-pytest-cov. Ricardo Wurmus
2021-04-13gnu: python-widgetsnbextension: Remove unnecessary inputs....* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]: Remove python-argon2-cffi, python-ipykernel, and python-terminado. [native-inputs]: Remove python-certifi and python-nose. Ricardo Wurmus
2021-04-13gnu: Add python-jupyterlab-widgets....* gnu/packages/jupyter.scm (python-jupyterlab-widgets): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-jupyter-packaging....* gnu/packages/jupyter.scm (python-jupyter-packaging): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-deprecation....* gnu/packages/python-xyz.scm (python-deprecation): New variable. Ricardo Wurmus
2021-04-13gnu: python-testpath: Update to 0.4.4....* gnu/packages/check.scm (python-testpath): Update to 0.4.4. [arguments]: Build the package as intended with flit. [native-inputs]: Add python-flit. Ricardo Wurmus
2021-04-13gnu: python-flit: Update to 3.2.0....* gnu/packages/python-xyz.scm (python-flit): Update to 3.2.0. [source]: Fetch from git repository to include flit_core. [arguments]: Add phases to bootstrap the build. [propagated-inputs]: Add python-pytoml and python-toml. [native-inputs]: Add python-docutils, python-responses, python-pygments-github-lexers, python-pytest, python-pytest-cov, python-sphinx, python-sphinxcontrib-github-alt, and python-testpath. Ricardo Wurmus
2021-04-13gnu: Add python-sphinxcontrib-github-alt....* gnu/packages/sphinx.scm (python-sphinxcontrib-github-alt): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-requests-unixsocket....* gnu/packages/python-web.scm (python-requests-unixsocket): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-pygments-github-lexers....* gnu/packages/python-xyz.scm (python-pygments-github-lexers): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-pytoml....* gnu/packages/python-build.scm (python-pytoml): New variable. Ricardo Wurmus
2021-04-13gnu: Remove python2-ipykernel....* gnu/packages/python-xyz.scm (python2-ipykernel): Remove variable. (python-ipykernel)[properties]: Remove python2-variant. Ricardo Wurmus
2021-04-13gnu: Remove python2-jupyter-console....* gnu/packages/python-xyz.scm (python2-jupyter-console): Remove variable. (python-jupyter-console)[properties]: Remove python2-variant. Ricardo Wurmus
2021-04-13gnu: Remove python2-jupyter-core....* gnu/packages/python-xyz.scm (python2-jupyter-core): Remove variable. Ricardo Wurmus
2021-04-13gnu: Remove python2-ipyparallel....* gnu/packages/python-xyz.scm (python2-ipyparallel): Remove variable. Ricardo Wurmus
2021-04-13gnu: Remove python2-matplotlib-documentation....* gnu/packages/python-xyz.scm (python2-matplotlib-documentation): Remove variable. Ricardo Wurmus
2021-04-13gnu: python-nbformat: Update to 5.1.3....* gnu/packages/python-xyz.scm (python-nbformat): Update to 5.1.3. [arguments]: Remove to enable tests. [native-inputs]: Add python-pytest. [properties]: Add python2-variant. (python2-nbformat): Keep at version 4.4.0; override version and source field. Ricardo Wurmus
2021-04-13gnu: python-nbconvert: Update to 6.0.7....* gnu/packages/python-xyz.scm (python-nbconvert): Update to 6.0.7. [arguments]: Remove configure flags, enable tests, override check phase. [propagated-inputs]: Add python-defusedxml, python-nbclient, python-pandocfilters, python-jupyterlab-pygments, and python-testpath. [properties]: Add python2-variant. (python2-nbconvert): Override version, source, arguments, and propagated-inputs. Ricardo Wurmus
2021-04-13gnu: Add python-nbclient....* gnu/packages/jupyter.scm (python-nbclient): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-jupyterlab-pygments....* gnu/packages/jupyter.scm (python-jupyterlab-pygments): New variable. Ricardo Wurmus
2021-04-13gnu: Add python-nest-asyncio....* gnu/packages/python-xyz.scm (python-nest-asyncio): New variable. Ricardo Wurmus
2021-04-13gnu: python-notebook: Update inputs....* gnu/packages/python-xyz.scm (python-notebook)[propagated-inputs]: Add python-argon2-cffi, python-ipykernel, python-ipython-genutils, python-jinja2, python-jupyter-client, python-pyzmq, python-tornado-6, and python-traitlets. [native-inputs]: Remove python-nose and python-sphinx; add python-coverage, python-nbval, python-pytest, python-pytest-cov, and python-requests-unixsocket. [arguments]: Use pytest instead of nosetests. Ricardo Wurmus
2021-04-13gnu: python-notebook: Update to 6.3.0....* gnu/packages/python-xyz.scm (python-notebook): Update to 6.3.0. Ricardo Wurmus
2021-04-13gnu: python-widgetsnbextension: Add missing inputs....* gnu/packages/python-xyz.scm (python-widgetsnbextension)[propagated-inputs]: Add python-argon2-cffi and python-terminado. Ricardo Wurmus
2021-04-13gnu: python-ipykernel: Update to 5.5.3....* gnu/packages/python-xyz.scm (python-ipykernel): Update to 5.5.3. Ricardo Wurmus
2021-04-13gnu: python-jupyter-client: Update to 6.1.12....* gnu/packages/python-xyz.scm (python-jupyter-client): Update to 6.1.12. [propagated-inputs]: Add python-dateutil and python-tornado-6. [native-inputs]: Add python-pytest. Ricardo Wurmus
2021-04-13gnu: python-jupyter-core: Update to 4.7.1....* gnu/packages/python-xyz.scm (python-jupyter-core): Update to 4.7.1. Ricardo Wurmus
2021-04-13gnu: python-terminado: Update to 0.9.4....* gnu/packages/python-web.scm (python-terminado): Update to 0.9.4. [propagated-inputs]: Replace python-tornado with python-tornado-6. [native-inputs]: Replace python-nose with python-pytest. [home-page]: Follow redirect. [arguments]: Update check phase. Ricardo Wurmus
2021-04-13gnu: esbuild: Update to 0.11.9....* gnu/packages/web.scm (esbuild): Update to 0.11.9. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Ryan Prior
2021-04-13gnu: visidata: Update to 2.4....* gnu/packages/visidata.scm (visidata): Update to 2.4. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Ryan Prior
2021-04-13gnu: gnu-standards: Update to 2020-11-25....* gnu/packages/gnu-doc.scm (gnu-standards): Update to 2020-11-25. [source]: Make file-name more descriptive. Use version variable for revision. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Morgan Smith
2021-04-13gnu: Add texlive-xcharter....* gnu/packages/tex.scm: New variable. Paul Garlick
2021-04-13tests: halt: Fix it....This fixes: <https://issues.guix.gnu.org/47727>. The OCR prompt detection is failing, so remove it altogether. It looks like the test doesn't need the prompt detection delay to work properly. * gnu/tests/base.scm (run-halt-test): Remove failing OCR detection. Mathieu Othacehe
2021-04-12services: postgresql: Change service default socket directory....Fixes <https://bugs.gnu.org/46737>. PostgreSQL running with a different socket directory to the default one in the package itself breaks some services, this commit restores the previous behaviour where PostgreSQL by default will run with a socket directory that matches the default used by PostgreSQL packaged for Guix. Switching to a different default value can happen, but only alongside changing the PostgreSQL package. * gnu/services/databases.scm (<postgresql-config-file>)[socket-directory]: Change default to #false. * doc/guix.texi (Database Services): Update documentation, and specify a different value for disabling connections via sockets. * gnu/tests/guix.scm (%guix-data-service-os): Use default PostgreSQL behaviour. * gnu/tests/monitoring.scm (%zabbix-os): Likewise. * gnu/tests/web.scm (patchwork-os): Likewise. Signed-off-by: Leo Famulari <leo@famulari.name> Christopher Baines
2021-04-12gnu: guile-picture-language: Update to 0.0.1-5.a1322bf....* gnu/packages/guile-xyz.scm (guile-picture-language): Update to 0.0.1-5.a1322bf. Ricardo Wurmus
2021-04-12etc/committer: Add missing newline....* etc/committer.scm.in (main): Add newline to message. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Morgan Smith
2021-04-12etc/committer: Use git plumbing instead of porcelain....* etc/committer.scm.in (diff-info): Use "git diff-files" instead of "git diff". (old-sexp): Use "git cat-file" instead of "git show". Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Morgan Smith
2021-04-12doc: Document 'gnu-build-system' keyword parameters....* doc/guix.texi (Build Systems): Document keyword parameters of 'gnu-build-system'. Ludovic Courtès
2021-04-12doc: Move list of build phases to "Build Phases"....Before this change, the 'gnu-build-system' phases were listed in the "Build Systems" section, and then summarized in the "Build Phases" section. This moves everything to "Build Phases". * doc/guix.texi (Build Systems): Move phase table to... (Build Phases): ... here. Rearrange surrounding text. Ludovic Courtès
2021-04-12channels: Build user channels with '-O1'....This should noticeably speed up compilation for channels with many files. * guix/channels.scm (standard-module-derivation)[build]: Define 'optimizations-for-level' and '-O1'. Pass #:optimization-options to 'compile-files'. Ludovic Courtès
2021-04-12services: ipfs: Tweak description....* gnu/services/networking.scm (ipfs-service-type)[description]: Avoid abbreviation. Ludovic Courtès
2021-04-12gnu: tests: Test basic funtionality of the IPFS service....It is tested whether the IPFS service listens at the gateway and API ports and whether it is possible to upload and download a bytevector. * gnu/tests/networking.scm (%ipfs-os): New variable. (run-ipfs-test): New procedure. (%test-ipfs): New system test. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos
2021-04-12tests: Support package extensions in the backdoor REPL....* gnu/tests.scm (<marionette-configuration>): Add 'extensions' field. (marionette-shepherd-service): Honour the field. (with-import-modules-and-extensions): Define a combination of 'with-import-modules' and 'with-extensions'. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Maxime Devos