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2021-11-19gnu: ocaml-lwt: Update to 5.4.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt): Update to 5.4.2.
2021-11-19gnu: dune: Update to 2.9.1.Julien Lepiller
* gnu/packages/ocaml.scm (dune): Update to 2.9.1.
2021-11-18gnu: linux-libre 5.4: Update to 5.4.160.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.160. (linux-libre-5.4-pristine-source): Update hash.
2021-11-18gnu: linux-libre: Update to 5.14.19.Leo Famulari
* gnu/packages/linux.scm (linux-libre-5.14-version): Update to 5.14.19. (linux-libre-5.14-pristine-source, deblob-scripts-5.14): Update hashes.
2021-11-19gnu: ocaml-alcotest: Update to 1.5.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-alcotest): Update to 1.5.0.
2021-11-19gnu: Add gplates.Julien Lepiller
* gnu/packages/geo.scm (gplates): New variable.
2021-11-18gnu: ocaml-ocp-index: Update to 1.3.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ocp-index): Update to 1.3.2.
2021-11-18gnu: Add shell2batch.Jacob Hrbek
* gnu/packages/crates-io.scm (shell2batch): New variable. * gnu/packages/patches/rust-shell2batch-lint-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18gnu: qtltools: Fix typo.Vagrant Cascadian
* gnu/packages/bioinformatics.scm (qtltools)[description]: Switch from "allows to go" to "allows going".
2021-11-18gnu: r-bgeecall: Fix typo.Vagrant Cascadian
* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows to generate" to "allows generating".
2021-11-18gnu: python-ueberzug: Fix typo.Vagrant Cascadian
* gnu/packages/python-xyz.scm (python-ueberzug)[description]: Use "draws" instead of "allows to draw".
2021-11-18gnu: r-msfeatures: Fix typos.Vagrant Cascadian
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from "allows to" to "can be used" and from "allows to aggregate" to "allows aggregating".
2021-11-18gnu: ocaml-ssl: Update to 0.5.10.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ssl): Update to 0.5.10.
2021-11-18gnupg: Honor GnuPG's configuration for the key server.Maxim Cournoyer
The previous default "pool.sks-keyservers.net" doesn't seem to work anymore; besides, users know best. * guix/gnupg.scm (%openpgp-key-server): Default to #f, meaning not provided. (gnupg-receive-keys): Make SERVER and KEYRING keyword arguments. Adjust doc. Provide the '--keyserver' argument only when %openpgp-key-server is not #f. (gnupg-verify*): Do not set a default value for SERVER. Adjust accordingly.
2021-11-18gnu: irrlicht: Update home-page.Efraim Flashner
* gnu/packages/games.scm (irrlicht)[home-page]: Update to new home-page.
2021-11-18gnu: r-tximeta: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
2021-11-18gnu: r-biodb: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
2021-11-18gnu: r-chromstar: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
2021-11-18gnu: r-scran: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
2021-11-18gnu: r-hdf5array: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
2021-11-18gnu: r-s4vectors: Update to 0.32.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
2021-11-18gnu: r-biocset: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
2021-11-18gnu: r-biocpkgtools: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
2021-11-18gnu: r-mixomics: Update to 6.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
2021-11-18gnu: r-rsubread: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
2021-11-18gnu: r-geoquery: Update to 2.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1. [propagated-inputs]: Add r-r-utils.
2021-11-18gnu: r-icobra: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
2021-11-18gnu: r-ggtree: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
2021-11-18gnu: r-treeio: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
2021-11-18gnu: r-systempiper: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
2021-11-18gnu: r-msnbase: Update to 2.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
2021-11-18gnu: r-ensembldb: Update to 2.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
2021-11-18gnu: r-chipseeker: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
2021-11-18gnu: r-annotationdbi: Update to 1.56.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
2021-11-18tests: Replace texlive importer tests.Ricardo Wurmus
* tests/texlive.scm (xml, sxml): Remove variables. ("fetch-sxml: returns SXML for valid XML", "sxml->package"): Remove tests. ("texlive->guix-package"): Add new test.
2021-11-18import: texlive: Take different package database as optional argument.Ricardo Wurmus
* guix/import/texlive.scm (tlpdb->package): Expect PACKAGE-DATABASE as argument. (texlive->guix-package): Accept PACKAGE-DATABASE keyword.
2021-11-18import: texlive: Print inputs with labels and guixified names.Ricardo Wurmus
* guix/import/texlive.scm (tlpdb->package): Improve handling of propagated-inputs.
2021-11-18gnu: wireshark: Update to 3.4.10.Nicolas Goaziou
* gnu/packages/networking.scm (wireshark): Update to 3.4.10.
2021-11-18gnu: emacs-elfeed-score: Update to 1.2.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.0.
2021-11-18gnu: coq-stdpp: Adjust '#:make-flags'.zimoun
* gnu/packages/coq.scm (coq-stdpp)[arguments]<#:make-flags>: Set install destination. <#:phases>: Remove replace 'install. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18gnu: coq-equations: Adjust '#:make-flags'.zimoun
* gnu/packages/coq.scm (coq-equations)[arguments]<#:make-flags>: Set install destination. <#:phases>: Remove replace 'install. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18gnu: coq-autosubst: Adjust '#:make-flags'.zimoun
* gnu/packages/coq.scm (coq-autosubst)[arguments]<#:make-flags>: Set install destination. <#:phases>: Remove replace 'install. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18gnu: coq-mathcomp: Adjust '#:make-flags'.zimoun
* gnu/packages/coq.scm (coq-mathcomp)[arguments]<#:make-flags>: Set install destination. <#:phases>: Remove replace 'install. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18gnu: Add coq-semantics.zimoun
* gnu/packages/coq.scm (coq-semantics): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-17gnu: perl-tie-handle-offset: Fix typo.Vagrant Cascadian
* gnu/packages/perl.scm (perl-tie-handle-offset)[description]: Fix "This module" typo.
2021-11-17gnu: perl-business-ismn: Fix typo.Vagrant Cascadian
* gnu/packages/perl.scm (perl-business-ismn)[description]: Fix "This module" typo.
2021-11-17gnu: perl-business-issn: Fix typo.Vagrant Cascadian
* gnu/packages/perl.scm (perl-business-issn)[description]: Fix "This module" typo.
2021-11-17gnu: perl-business-isbn: Fix typo.Vagrant Cascadian
* gnu/packages/perl.scm (perl-business-isbn)[description]: Fix "This module" typo.
2021-11-17gnu: perl-test-dir: Fix typo.Vagrant Cascadian
* gnu/packages/perl-check.scm (perl-test-dir)[description]: Fix "This module" typo.
2021-11-17gnu: python-sgmllib3k: Fix typo.Vagrant Cascadian
* gnu/packages/python-xyz.scm (python-sgmllib3k)[description]: Fix "This package" typo.
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