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2019-01-07gnu: Move R packages from geo.scm to cran.scm....* gnu/packages/geo.scm (r-maps, r-mapproj, r-rgooglemaps, r-geosphere, r-ggmap): Move from here... * gnu/packages/cran.scm: ...to here. Ricardo Wurmus
2019-01-07gnu: emacs-ess: Move to (gnu packages statistics)....* gnu/packages/emacs.scm (emacs-ess): Move from here... * gnu/packages/statistics.scm (emacs-ess): ...to here. Ricardo Wurmus
2019-01-07gnu: python-rpy2: Move to (gnu packages statistics)....* gnu/packages/python.scm (python-rpy2): Move from here... * gnu/packages/statistics.scm (python-rpy2): ...to here. Ricardo Wurmus
2019-01-07gnu: Remove reference to (gnu packages statistics)....* gnu/packages/web.scm: Remove obsolete use-module clause. Ricardo Wurmus
2019-01-07gnu: r-rmysql: Move from databases.scm to cran.scm...* gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here. Ricardo Wurmus
2019-01-07gnu: biber: Update to 2.12....* gnu/packages/tex.scm (biber): Update to 2.12. [source]: Use 'git-fetch'. Add patch. [inputs]: Add perl-file-slurper. Remove perl-file-slurp. * gnu/packages/patches/biber-fix-encoding-write.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Jelle Licht
2019-01-07gnu: r-feather: Move from serialization.scm to cran.scm....* gnu/packages/serialization.scm (r-feather): Move from here... * gnu/packages/cran.scm (r-feather): ...to here. Ricardo Wurmus
2019-01-07gnu: Fix top-level circular references between emacs.scm and llvm.scm....Previously, loading either of these two modules could fail somewhat non-deterministically because each top-level was referencing a variable defined by the other module's top-level. * gnu/packages/emacs.scm (package-elisp-from-package): Move to... * gnu/packages/llvm.scm (package-elisp-from-package): Here. Keep private. Ludovic Courtès
2019-01-07gnu: perl-file-slurper: Update to 0.012....* gnu/packages/perl.scm (perl-file-slurper): Update to 0.012. [native-inputs]: Add perl-test-warnings. Jelle Licht
2019-01-07gnu: Move R packages from web.scm to cran.scm....* gnu/packages/web.scm (r-httpuv, r-jsonlite, r-servr, r-htmltools, r-htmlwidgets, r-htmltable, r-curl, r-hwriter, r-rjson, r-shiny, r-shinydashboard, r-shinyfiles, r-crosstalk, r-rook, r-miniui): Move these from here... * gnu/packages/cran.scm: ...to here. Ricardo Wurmus
2019-01-07Revert "gnu: Use package-elisp-from-package for clangs emacs lisp files"...This reverts commit 5bc2e14add6433adbade3ccdf28c60e57334c20a. Pierre Neidhardt
2019-01-07gnu: mantis: Limit to x86_64-linux....* gnu/packages/bioinformatics.scm (mantis)[supported-systems]: New field. Efraim Flashner
2019-01-07gnu: package-elisp-from-package: Clarify docstring....* gnu/packages/emacs.scm (package-elisp-from-package)[docstring]: Clarify. Pierre Neidhardt
2019-01-07gnu: Use package-elisp-from-package for clangs emacs lisp files...Use package-elisp-from-package for emacs-clang-format and emacs-clang-rename. Also remove package-from-clang-elisp-file as it is not needed anymore. * gnu/packages/llvm.scm (emacs-clang-format): Use package-elisp-from-package * gnu/packages/llvm.scm (emacs-clang-rename): Use package-elisp-from-package * gnu/packages/llvm.scm (package-from-clang-elisp-file): Remove function Tim Gesthuizen
2019-01-07gnu: Add package-elisp-from-package...Add a function to generate package definitions that packages single elisp files from other packages. * gnu/packages/emacs.scm (package-elisp-from-package): New function Tim Gesthuizen
2019-01-07gnu: python2-fastlmm: Move to machine-learning.scm....This is a step towards removing OCaml modules from the closure of (gnu packages python). * gnu/packages/python.scm (python2-fastlmm): Move to... * gnu/packages/machine-learning.scm (python2-fastlmm): ... here. Ludovic Courtès
2019-01-07gnu: Remove unnecessary build-side module imports....* gnu/packages/batik.scm, gnu/packages/boost.scm, gnu/packages/calendar.scm, gnu/packages/gl.scm, gnu/packages/lua.scm, gnu/packages/qt.scm, gnu/packages/simulation.scm, gnu/packages/terminals.scm: Remove unnecessary import of (guix build utils). * gnu/packages/emacs.scm: Remove unnecessary imports of (guix ...). * gnu/packages/libcanberra.scm: Use (srfi srfi-1) instead of (guix build utils) for 'alist-delete'. * gnu/packages/wxwidgets.scm: Likewise. Ludovic Courtès
2019-01-07gnu: Move Emacs modes for Dedukti to ocaml.scm....This removes OCaml-related modules from the closure of (gnu packages emacs). * gnu/packages/emacs.scm (emacs-dedukti-mode, emacs-flycheck-dedukti): Move to ... * gnu/packages/ocaml.scm: ... here. Ludovic Courtès
2019-01-07gnu: Move OCaml packages away from maths.scm....This removes (gnu packages ocaml) and related build system modules from the closure of (gnu packages maths). * gnu/packages/maths.scm (ocaml-gsl, ocaml4.01-gsl, cubicle): Move to... * gnu/packages/ocaml.scm: ... here. Ludovic Courtès
2019-01-07lint: Avoid 'dirname' call at the top level....* guix/scripts/lint.scm (%distro-directory): Wrap in 'mlambda'. (check-patch-file-names): Adjust accordingly. Ludovic Courtès
2019-01-07Remove (guix build pull)....This module had been unused since commit 5f93d97005897c2d859f0be1bdff34c88467ec61 (Oct. 2017). * guix/build/pull.scm: Delete. * Makefile.am (MODULES): Remove. Ludovic Courtès
2019-01-07gnu: Add rmlint....* gnu/packages/disk.scm (rmlint): New variable. Pierre Neidhardt
2019-01-07gnu: Add prosody-http-upload....* gnu/packages/messaging.scm (prosody-http-upload): New variable. Clément Lassieur
2019-01-07gnu: Add mantis....* gnu/packages/bioinformatics.scm (mantis): New variable. Ricardo Wurmus
2019-01-07gnu: Add sdsl-lite....* gnu/packages/datastructures.scm (sdsl-lite): New variable. Ricardo Wurmus
2019-01-07gnu: autoconf-archive: Update to 2019.01.06....* gnu/packages/autotools.scm (autoconf-archive): Update to 2019.01.06. Efraim Flashner
2019-01-07gnu: Add jose....* gnu/packages/jose.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Manolis Ragkousis
2019-01-07gnu: Add slurp....* gnu/packages/image.scm (slurp): New variable. Rutger Helling
2019-01-07gnu: libarchive: Replace with libarchive 3.3.3 and fix CVE-2018-{1000877,1000......* gnu/packages/backup.scm (libarchive)[source, home-page]: Use HTTPS. [replacement]: New field. (libarchive-3.3.3): New variable. * gnu/packages/patches/libarchive-CVE-2018-1000877.patch, gnu/packages/patches/libarchive-CVE-2018-1000878.patch, gnu/packages/patches/libarchive-CVE-2018-1000880.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Alex Vong
2019-01-06gnu: Add kitty....* gnu/packages/terminals.scm (kitty): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Gabriel Hondet
2019-01-06hydra: Compute jobs in an inferior....Previously we would rely on auto-compilation of all the Guix modules. The complete evaluation would take ~15mn on berlin.guixsd.org and require lots of RAM. This approach should be faster since potentially only part of the modules are rebuilt. Furthermore, as a side-effect, it builds the derivations that 'guix pull' uses. * build-aux/hydra/gnu-system.scm: Remove 'eval-when' form. (hydra-jobs): New procedure. * gnu/ci.scm (package->alist, qemu-jobs, system-test-jobs) (tarball-jobs): Return strings for the 'license' field. * guix/self.scm (compiled-guix)[*cli-modules*]: Add (gnu ci). Ludovic Courtès
2019-01-06hydra: evaluate: Add the checkout to the store....* build-aux/hydra/evaluate.scm <top level>: Add call to 'add-to-store'. Use that as the 'file-name' attribute. Call 'primitive-load' in a directory excursion to SOURCE. Ludovic Courtès
2019-01-06hydra: Move job definitions to (gnu ci)....* build-aux/hydra/gnu-system.scm: Move code to... * gnu/ci.scm: ... here. New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Ludovic Courtès
2019-01-06build-self: Don't clobber the output port....The newline is meant to follow the spinner's traces so it must go to the error port as well. * build-aux/build-self.scm (build): Send newline to the error port. Ludovic Courtès
2019-01-06gnu: gama: Update to 2.02....* gnu/packages/gps.scm (gama): Update to 2.02. Efraim Flashner
2019-01-06gnu: moe: Update to 1.10....* gnu/packages/moe.scm (moe): Update to 1.10. [license]: Fix license, gpl2+. Efraim Flashner
2019-01-06gnu: recutils: Update to 1.8....* gnu/packages/databases.scm (recutils): Update to 1.8. [source]: Remove snippet. [arguments]: Remove custom 'set-bash4.4-header-location phase. Enable parallel tests. [inputs]: Move check ... [native-inputs]: ... to here. Add pkg-config. Efraim Flashner
2019-01-06gnu: unrtf: Update to 0.21.10....* gnu/packages/unrtf.scm (unrtf): Update to 0.21.10. [source]: Remove patch, remove snippet. [license]: Update to gpl3+. * gnu/packages/patches/unrtf-CVE-2016-10091.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Efraim Flashner
2019-01-06gnu: global: Update to 6.6.3....* gnu/packages/code.scm (global): Update to 6.6.3. Efraim Flashner
2019-01-06gnu: emacs-evil-multiedit: Use version tag instead of commit....* gnu/packages/emacs.scm (emacs-evil-multiedit): Use version tag instead of commit. Pierre Neidhardt
2019-01-06gnu: wine-staging: Add ffmpeg support....* gnu/packages/wine.scm (wine-staging)[inputs]: Add ffmpeg. Rutger Helling
2019-01-06gnu: wine-staging: Update to 4.0-rc5....* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.0-rc5. * gnu/packages/wine.scm (wine-staging): Update to 4.0-rc5. Rutger Helling
2019-01-06gnu: python-pyicu: Update to 2.2....* gnu/packages/python.scm (python-pyicu): Update to 2.2. Efraim Flashner
2019-01-06gnu: python-pysocks: Update to 1.6.8....* gnu/packages/python.scm (python-pysocks): Update to 1.6.8. Efraim Flashner
2019-01-06gnu: python-packaging: Update to 18.0....* gnu/packages/python.scm (python-packaging): Update to 18.0. Efraim Flashner
2019-01-06gnu: python-astroid: Update to 2.1.0....* gnu/packages/python.scm (python-astroid): Update to 2.1.0. Efraim Flashner
2019-01-06gnu: python-imagesize: Update to 1.1.0....* gnu/packages/python.scm (python-imagesize): Update to 1.1.0. Efraim Flashner
2019-01-06gnu: python-sphinx-alabaster-theme: Update to 0.7.12....* gnu/packages/python.scm (python-sphinx-alabaster-theme): Update to 0.7.12. Efraim Flashner
2019-01-06gnu: python-pycryptodome: Update to 3.7.2....* gnu/packages/python-crypto.scm (python-pycryptodome): Update to 3.7.2. Efraim Flashner
2019-01-06gnu: python-certifi: Update to 2018.11.29....* gnu/packages/python-crypto.scm (python-certifi): Update to 2018.11.29. Efraim Flashner