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Previously the KNOWN-FS value used in 'essential-services' would be
incomplete: it would lack all the file systems provided by services that
extend 'file-system-service-type' (/sys/fs/cgroup,
/proc/sys/fs/binfmt_misc, etc.) Consequently, upon shutdown,
'user-processes' would unmount these file systems before their
corresponding service had been stopped; when their corresponding (e.g.,
'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call
would fail.
This was harmless in practice, but this patch makes sure things work as
intended and file systems are unmounted in the right order.
* gnu/services/base.scm (file-system-shepherd-services): Instantiate
'user-file-systems' Shepherd service from here.
(user-unmount-service-type, user-unmount-service): Remove.
* gnu/system.scm (essential-services): Remove call to 'user-unmount-service'.
* gnu/system/install.scm (cow-store-service-type): Adjust comment.
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* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
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* gnu/packages/admin.scm (thefuck): Update to 3.25
[inputs]: Add python-pyte.
[native-inputs]: Remove python-setuptools.
* gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
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* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
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gnu/packages/maven.scm (maven-resolver-util): New variable.
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* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
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* gnu/packages/maven.scm (maven-resolver-spi): New variable.
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* gnu/packages/maven.scm: New file.
(maven-resolver-api): New variable.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
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* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45.
[inputs]: Remove go-github-com-xtaci-kcp-go,
go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add
go-github-com-pkg-errors.
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* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
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* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove
variable.
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* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
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* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove
variable.
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* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
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* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
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* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
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* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
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* gnu/packages/regex.scm (re2): Update to 2018-03-01.
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* gnu/packages/image-viewers.scm (feh): Update to 2.25.
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* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
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See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for
more information about the vulnerabilities.
* gnu/packages/django.scm (python-django): Update to 1.11.11.
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* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
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* gnu/packages/bioinformatics.scm (htslib): Update to 1.7.
[arguments]: Remove field.
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* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and
host system information from settings file.
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* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit.
[arguments]: Add build phase to delete test logs.
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* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid
running tempdir at build time.
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Previously, if ~/.cache was not write-accessible, 'guix' would exit with
code 1 without printing any message. That was because the 'make-stack'
call would fail since the exception (a 'system-error) came from
'compile-file', which was called at a point where TAG wasn't installed
yet. Secondly, to mimick auto-compilation behavior, we just swallow
'system-error raised by 'compile-file'.
Reported by Clément Lassieur.
* guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of
TAG. Catch 'system-error around it and ignore it.
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* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
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* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with
"\\.el$" in ‘el-dir’.
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* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME
about failing script.
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* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>:
Modify fix-version to use the distibution version of java-aqute-bndlib.
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* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
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* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
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* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
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* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
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* gnu/packages/xorg.scm (editres): Update to 1.0.7.
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* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
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* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
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* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
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* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
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* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
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* gnu/packages/profiling.scm (papi)[home-page]: Use HTTPS.
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* gnu/packages/profiling.scm (papi)[arguments]: Install ‘documentation’
to a customary subdirectory of /share/doc.
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* gnu/packages/xorg.scm (xpra): Update to 2.2.5.
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Fixes <https://bugs.gnu.org/29226> for the most part.
* guix/ui.scm (load*): Add call to 'compile-file' on 2.2.3.
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Suggested by Efraim Flashner <efraim@flashner.co.il>.
* config-daemon.ac: Set 'guix_substitute_urls' to berlin.guixsd.org on
aarch64.
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* config-daemon.ac: Remove GUILE_MODULE_AVAILABLE check for (gnutls).
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Fixes <https://bugs.gnu.org/30655>.
Reported by Marco van Hulten <marco@hulten.org>.
* doc/guix.texi (Application Setup): Adjust 'xset +fp' example.
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