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2017-03-12gnu: Add r-mnormt.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-mnormt): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-rcppprogress.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-rcppprogress): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-caret.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-caret): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-car.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-car): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-pbkrtest.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-pbkrtest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-lme4.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-lme4): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-nloptr.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-nloptr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-quantreg.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-quantreg): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-matrixmodels.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-matrixmodels): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-modelmetrics.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-modelmetrics): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-rcppeigen.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-rcppeigen): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-minqa.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-minqa): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12build: GnuTLS is now a hard dependency.Ludovic Courtès
Discussed as part of <https://bugs.gnu.org/25975>. * configure.ac: Check for (gnutls) and error out if it's missing. * doc/guix.texi (Requirements): Move GnuTLS from optional to required. (Substitutes): Remove footnote about the need for GnuTLS.
2017-03-12gnu: wine: Update to 2.3.Danny Milosavljevic
* gnu/packages/wine.scm (wine): Update to 2.3.
2017-03-11gnu: Add phonon-backend-gstreamer.Thomas Danckaert
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: phonon: Install Qt extensions.Thomas Danckaert
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add -DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the installation directory. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: re2: Set CXX for cross-compilation.Sergei Trofimovich
* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: cuirass: Update to 0.0.1 revision 5.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: imagemagick: Update to 6.9.7-10.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
2017-03-11gnu: Add ghc-unexceptionalio.rsiddharth
* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: Add emacs-memoize.Arun Isaac
* gnu/packages/emacs.scm (emacs-memoize): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11linux-initrd: Add a raw-initrd and use it to define base-initrd.Mathieu Othacehe
* gnu/system/linux-initrd.scm (raw-initrd): New exported variable. (base-initrd): Use raw-initrd to build the initrd. * doc/guix.texi (Initial RAM Disk): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11doc: Update the package count.John Darrington
* doc/guix.texi: Update the number of packages available.
2017-03-10gnu: wget: Fix CVE-2017-6508.Leo Famulari
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-11gnu: Add r-fnn.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fnn): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-pbapply.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-pbapply): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-vgam.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-vgam): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: vsearch: Update to 2.4.2.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
2017-03-11gnu: Add r-ape.Raoul Jean Pierre Bonnal
* gnu/packages/bioinformatics.scm (r-ape): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-fpc.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fpc): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-trimcluster.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-trimcluster): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-robustbase.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-robustbase): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-deoptimr.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-deoptimr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-prabclus.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-prabclus): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-mclust.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-mclust): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-flexmix.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-flexmix): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-modeltools.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-modeltools): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-diptest.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-diptest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-10gnu: Add obnam.Arun Isaac
* gnu/packages/backup.scm (obnam): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-10gnu: icestorm: Replace reference in icebox_vlog.Theodoros Foradis
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase "fix-usr-local" to replace reference to /usr/local/share.
2017-03-10gnu: dub: Update to 1.2.2.Danny Milosavljevic
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
2017-03-10services: openssh: Fix 'PrintLastLog' default behaviour.Clément Lassieur
* gnu/services/ssh.scm (openssh-config-file): Add 'print-last-log?' option. (<openssh-configuration>)[print-last-log?]: Add it. (openssh-activation): Touch /var/log/lastlog. * doc/guix.texi (Networking Services): Document 'print-last-log?'. Before that, the service did not work as expected because /var/log/lastlog did not exist. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10services: openssh: Remove deprecated options.Clément Lassieur
* gnu/services/ssh.scm (openssh-config-file): Remove them. (<openssh-configuration>)[rsa-authentication?]: Remove it. (<openssh-configuration>)[protocol-number]: Remove it. * doc/guix.texi (Networking Services): Remove them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10services: openssh: Enable PAM.Clément Lassieur
* gnu/services/ssh.scm: (openssh-pam-services): New procedure. (openssh-service-type): Use it to extend PAM-ROOT-SERVICE-TYPE. (<openssh-configuration>)[challenge-response-authentication?]: New field. (<openssh-configuration>)[use-pam?]: New field. (openssh-config-file): Add them. * doc/guix.texi (Networking Services): Document them. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2017-03-10system: Avoid '_' as a pattern variable in 'match'.Ludovic Courtès
* gnu/system.scm (operating-system-root-file-system): Don't use '_' as a wildcard in 'match', to cope with literal semantics in 2.2.
2017-03-10services: Create /var/log upon activation.Christopher Baines
When launching a container created with guix system container, the attempt to create /var/log/wtmp would fail, as /var/log did not exist. * gnu/services.scm (activation-script): Create /var/log Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10services: Add exim-service-type.Carlo Zancanaro
* gnu/services/mail.scm (<exim-configuration>): New record type. (exim-computed-config-file, exim-shepherd-service, exim-activation, exim-etc, exim-profile): New procedures. (exim-service-type, %exim-accounts): New variables. * doc/guix.text (Mail Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10gnu: hmmer: Build reproducibly.Ben J. Woodcroft
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10gnu: Add sambamba.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
2017-03-10gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].Leo Famulari
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
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