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2020-09-12gnu: muse-sequencer: Enable more features....* gnu/packages/music.scm (muse-sequencer)[arguments]: Add phase "fix-include" to patch header file reference; remove obsolete ENABLE_LV2_SUPPLIED configuration option; remove ENABLE_RTAUDIO=OFF. [inputs]: Add lrdf, pulseaudio, rtaudio, and rubberband. Ricardo Wurmus
2020-09-12gnu: muse-sequencer: Update to 3.1.1....* gnu/packages/music.scm (muse-sequencer): Update to 3.1.1. [arguments]: Set CMAKE_EXE_LINKER_FLAGS and CMAKE_SHARED_LINKER_FLAGS; end "chdir" phase with #T. Ricardo Wurmus
2020-09-12gnu: emacs-pdf-tools: Update to 0.90-1....* gnu/packages/emacs-xyz.scm (emacs-pdf-tools): Update to 0.90-1. Fix indentation. Update to an unreleased commit to fix an incompatibility with Emacs 27+. Nicolas Goaziou
2020-09-12Revert "gnu: linux-libre: Update to 5.8.8."...This reverts commit ad42c20921235532e80e776fd55090127389208b, which breaks "guix system build" as described in <https://issues.guix.info/issue/43352>. Oleg Pykhalov
2020-09-12ui: Lexicographically sort transaction entries based on their package name....* guix/ui.scm (show-manifest-transaction): Sort entries to be displayed in a tabulated view. Maxim Cournoyer
2020-09-12ui: Refactor the package-strings helper in show-manifest-transaction....* guix/ui.scm (show-manifest-transaction)[package-strings]: Add an OLD-VERSIONS keyword parameter. Absorb the code path previously found in the upgrade-string. Remove upgrade-string. (show-manifest-transaction): Adjust to the above changes. Maxim Cournoyer
2020-09-12doc: Document the use of snippets vs phases....* doc/contributing.texi (Snippets versus phases): New section. Maxim Cournoyer
2020-09-12gnu: python-aiodns: Propagate python-pycares....* gnu/packages/python-web.scm (python-aiodns)[inputs]: Move python-pycares... [propagated-inputs]: ...to here. Danny Milosavljevic
2020-09-12gnu: Add poezio....* gnu/packages/messaging.scm (poezio): New variable. Raghav Gururajan
2020-09-12gnu: Add python-potr....* gnu/packages/python-crypto.scm (python-potr): New variable. Raghav Gururajan
2020-09-12gnu: Add python-slixmpp....* gnu/packages/python-xyz.scm (python-slixmpp): New variable. Raghav Gururajan
2020-09-12gnu: ebusd: Enable MQTT support....* gnu/packages/embedded.scm (ebusd)[inputs]: Add mosquitto. Danny Milosavljevic
2020-09-12gnu: Add mosquitto....* gnu/packages/messaging.scm (mosquitto): New variable. Danny Milosavljevic
2020-09-11gnu: lldpd: Update to 1.0.6....* gnu/packages/networking.scm (lldpd): Update to 1.0.6. Tobias Geerinckx-Rice
2020-09-11gnu: enet: Update to 1.3.16....* gnu/packages/networking.scm (enet): Update to 1.3.16. Tobias Geerinckx-Rice
2020-09-11gnu: batctl: Update to 2020.3....* gnu/packages/networking.scm (batctl): Update to 2020.3. Tobias Geerinckx-Rice
2020-09-11Revert "gnu: dovecot: Set moduledir to global directory."...This reverts commit db0109be42547d5dbb0fc1eb8ae30ccc968ed88b. Same reason as commit d9d88c2ff0d367599d0a851ccf9377c4e21079d6. Tobias Geerinckx-Rice
2020-09-11Revert "services: dovecot: Use modules via symlink to system profile."...This reverts commit bcfe0f0c1e9a2b91049d7c6c591c7f0c6a002c14 for now. It breaks most current use(r)s of the Dovecot service and needs to be combined with an extra modules configuration field of some kind. See <https://issues.guix.gnu.org/43347>. Tobias Geerinckx-Rice
2020-09-11gnu: padthv1: Update to 0.9.17....* gnu/packages/music.scm (padthv1): Update to 0.9.17. [inputs]: Replace fftw with fftwf. Tobias Geerinckx-Rice
2020-09-11gnu: libetpan: Update to 1.9.4....* gnu/packages/mail.scm (libetpan): Update to 1.9.4. Tobias Geerinckx-Rice
2020-09-11gnu: bsequencer: Update to 1.6.0....* gnu/packages/music.scm (bsequencer): Update to 1.6.0. Ricardo Wurmus
2020-09-11gnu: r-adaptivesparsity: End build phase on #T....* gnu/packages/cran.scm (r-adaptivesparsity)[arguments]: End phase "link-against-armadillo" with Boolean. Ricardo Wurmus
2020-09-11gnu: r-adaptivesparsity: Fix case of "Gaussian"....* gnu/packages/cran.scm (r-adaptivesparsity)[description]: Fix typo. Ricardo Wurmus
2020-09-11gnu: r-qtl: Use CRAN-URI....* gnu/packages/cran.scm (r-qtl)[source]: Use CRAN-URI instead of explicit mirror URL. Ricardo Wurmus
2020-09-11gnu: r-qtl: Correct indentation....* gnu/packages/cran.scm (r-qtl): Reindent. [description]: Reflow paragraphs. Ricardo Wurmus
2020-09-11gnu: r-absfiltergsea: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-absfiltergsea): Move from here... * gnu/packages/cran.scm (r-absfiltergsea): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-diversitree: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-diversitree): Move from here... * gnu/packages/cran.scm (r-diversitree): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-phangorn: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-phangorn): Move from here... * gnu/packages/cran.scm (r-phangorn): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-seurat: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-seurat): Move from here... * gnu/packages/cran.scm (r-seurat): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-maldiquant: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-maldiquant): Move from here... * gnu/packages/cran.scm (r-maldiquant): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-seqminer: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-seqminer): Move from here... * gnu/packages/cran.scm (r-seqminer): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-qtl2: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-qtl2): Move from here... * gnu/packages/cran.scm (r-qtl2): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-qtl: Move to (gnu packages cran)....* gnu/packages/bioinformatics.scm (r-qtl): Move from here... * gnu/packages/cran.scm (r-qtl): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-igraph: Move to (gnu packages cran)....* gnu/packages/graph.scm (r-igraph): Move from here... * gnu/packages/cran.scm (r-igraph): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-diffusionmap: Move to (gnu packages cran)....* gnu/packages/graph.scm (r-diffusionmap): Move from here... * gnu/packages/cran.scm (r-diffusionmap): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-adaptivesparsity: Move to (gnu packages cran)....* gnu/packages/machine-learning.scm (r-adaptivesparsity): Move from here... * gnu/packages/cran.scm (r-adaptivesparsity): ...to here. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> zimoun
2020-09-11gnu: r-codedepends: Comment why it is in bioconductor.scm....* gnu/packages/bioconductor.scm (r-codedepends): Add comment. zimoun
2020-09-11gnu: Add r-fhtest....* gnu/packages/bioconductor.scm (r-fhtest): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-interval....* gnu/packages/bioconductor.scm (r-interval): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-perm....* gnu/packages/cran.scm (r-perm): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-mlecens....* gnu/packages/cran.scm (r-mlecens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: Add r-icens....* gnu/packages/bioconductor.scm (r-icens): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Peter Lo
2020-09-11gnu: r-tidymodels: Update to 0.1.1....* gnu/packages/cran.scm (r-tidymodels): Update to 0.1.1. [propagated-inputs]: Remove r-pillar, r-tidyposterior, r-tidypredict, and r-tidytext; add r-modeldata and r-tidyr. [native-inputs]: Add r-rmarkdown, pandoc, and pandoc-citeproc. Ricardo Wurmus
2020-09-11gnu: r-infer: Update to 0.5.3....* gnu/packages/cran.scm (r-infer): Update to 0.5.3. Ricardo Wurmus
2020-09-11gnu: Add r-modeldata....* gnu/packages/cran.scm (r-modeldata): New variable. Ricardo Wurmus
2020-09-11gnu: r-parsnip: Update to 0.1.3....* gnu/packages/cran.scm (r-parsnip): Update to 0.1.3. Ricardo Wurmus
2020-09-11gnu: r-tidytext: Update to 0.2.5....* gnu/packages/cran.scm (r-tidytext): Update to 0.2.5. [propagated-inputs]: Remove r-stopwords; add r-tibble. Ricardo Wurmus
2020-09-11gnu: r-tidypredict: Update to 0.4.6....* gnu/packages/cran.scm (r-tidypredict): Update to 0.4.6. Ricardo Wurmus
2020-09-11gnu: r-tune: Update to 0.1.1....* gnu/packages/cran.scm (r-tune): Update to 0.1.1. [propagated-inputs]: Add r-vctrs. Ricardo Wurmus
2020-09-11gnu: r-dials: Update to 0.0.8....* gnu/packages/cran.scm (r-dials): Update to 0.0.8. Ricardo Wurmus
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