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2022-10-15gnu: Add r-macrophage....X-Debbugs-Cc: rekado@elephly.net * gnu/packages/bioconductor.scm (r-macrophage): New variable. Mădălin Ionel Patrașcu
2022-10-15gnu: emacs-next: Update to 29.0.50-2.4aeb80c....* gnu/packages/patches/emacs-native-comp-driver-options.patch: New file. * gnu/local.mk: Register it here. * gnu/packages/emacs.scm (emacs-next): Update to 29.0.50-2.4aeb80c. Liliana Marie Prikler
2022-10-15doc: Explain Emacs native-compilation....* doc/guix.texi ("Application Setup")["Emacs Packages"]: Add a note explaining that Emacs can compile packages to native code now. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> zimoun
2022-10-15gnu: Add rdkit....* gnu/packages/chemistry.scm (rdkit): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add ringdecomposerlib....* gnu/packages/chemistry.scm (ringdecomposerlib): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add avalon-toolkit....* gnu/packages/chemistry.scm (avalon-toolkit): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add yaehmop....* gnu/packages/chemistry.scm (yaehmop): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add coordgenlibs....* gnu/packages/chemistry.scm (coordgenlibs): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add maeparser....* gnu/packages/chemistry.scm (maeparser): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add freesasa....* gnu/packages/chemistry.scm (freesasa): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add gemmi....* gnu/packages/patches/gemmi-fix-pegtl-usage.patch: New file. * gnu/packages/patches/gemmi-fix-sajson-types.patch: New file. * gnu/local.mk (dist_patch_DATA): Register them here. * gnu/packages/chemistry.scm (gemmi): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add sajson-for-gemmi....* gnu/packages/cpp.scm (sajson-for-gemmi): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add optionparser....* gnu/packages/cpp.scm (optionparser): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add tinydir....* gnu/packages/c.scm (tinydir): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add cbehave....* gnu/packages/check.scm (cbehave): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add sajson....* gnu/packages/cpp.scm (sajson): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add pocketfft-cpp....* gnu/packages/patches/pocketfft-cpp-prefer-preprocessor-if.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it here. * gnu/packages/cpp.scm (pocketfft-cpp): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: Add fast-float....* gnu/packages/cpp.scm (fast-float-test-files, fast-float): New variables. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> David Elsing
2022-10-15gnu: ghc-lucid: Fix cabal-revision....Was not updated after update in commit b97f549b14402421fcfb360ddd4cff7de93b9af0. * gnu/packages/haskell-xyz.scm (ghc-lucid)[arguments]: Update cabal-revision. Signed-off-by: Lars-Dominik Braun <lars@6xq.net> Pierre-Henry Fröhring
2022-10-15gnu: font-ibm-plex: Use git source....* gnu/packages/fonts.scm (font-ibm-plex)[source]: Use git source. Arun Isaac
2022-10-15gnu: Add python-crossenv....* gnu/packages/python-xyz.scm (python-crossenv): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Brian Kubisiak
2022-10-15gnu: bemenu: Update to 0.6.10, use new package style....* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.10. [arguments]: Use G-expressions. Use #$output instead of assoc-ref. [inputs]: Remove labels. Signed-off-by: Ludovic Courtès <ludo@gnu.org> kiasoc5
2022-10-15gnu: libglvnd: Update to 1.5.0....* gnu/packages/gl.scm (libglvnd): Update to 1.5.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Hilton Chain
2022-10-15git: 'update-cached-checkout' recognizes truncated commit IDs....Fixes a regression introduced in 602527ab9778165ca9a8f9cb62036038b5354688 that broke 'tests/guix-build-branch.sh'. * guix/git.scm (resolve-reference): Revert change from 602527ab9778165ca9a8f9cb62036038b5354688. Ludovic Courtès
2022-10-14gnu: emacs-eval-in-repl-erlang: Fix unbound variable....Commit 0b120ad5f88d32e0c716b1442fe1ea3c562b5586 introduced a circular dependency where (gnu packages erlang) would transitively load (gnu packages emacs-xyz) before the emacs-erlang package was defined. * gnu/packages/emacs-xyz.scm (emacs-eval-in-repl-erlang)[#:inputs]: Wrap in delay. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com> Brian Kubisiak
2022-10-14gnu: emacs-ido-completing-read+: Disable native compilation....This fixes an issue, wherein inadvertent native compilation leads to system crashes. See <https://bugs.gnu.org/57878> for a discussion. * gnu/packages/emacs-xyz.scm (emacs-ido-completing-read+)[arguments]: Add a phase to disable native compilation. Liliana Marie Prikler
2022-10-14guix: emacs-utils: Support disabling native-compilation....* guix/build/emacs-utils.scm (emacs-batch-disable-compilation): Add ‘native?’ argument and honour it. Liliana Marie Prikler
2022-10-12Merge remote-tracking branch 'origin/master' into staging...Conflicts: gnu/packages/gnuzilla.scm gnu/packages/graphics.scm gnu/packages/gstreamer.scm gnu/packages/gtk.scm gnu/packages/kde-frameworks.scm gnu/packages/video.scm Efraim Flashner
2022-10-12gnu: Register (gnu packages bqn) in build infrastructure....This is a follow-up to commit 9aa2a41b475ff04ed32cc450e8a9120e18720e83. * gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/packages/bqn.scm. Marius Bakke
2022-10-12gnu: ungoogled-chromium: Update to 106.0.5249.103-1....* gnu/packages/chromium.scm (%chromium-version): Set to 106.0.5249.103. (%ungoogled-origin, ungoogled-chromium): Update hashes. Marius Bakke
2022-10-11guix-install.sh: Restore compatibility with "yes" invocation....Commit 6a2e303d3a had modified prompt_yes_no to only read a single character, aiming to ease the user experience. This was, in retrospect, a bad idea, as it makes user input error more likely and introduces complexity. This commit reverts to line-oriented input, while preserving the default yes value so that a user can simply hit 'Enter' at the prompt in place of typing "yes". * etc/guix-install.sh (_flush): Delete function. (prompt_yes_no): Restore line-oriented read. Remove loop. Make anything else than yes means no. Use Bash features to streamline definition. Reported-by: Lars-Dominik Braun <lars@6xq.net> and others. Maxim Cournoyer
2022-10-11gnu: Add libskk....* gnu/packages/language.scm (libskk): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org> mirlan
2022-10-11gnu: profanity: Update to 0.13.0....* gnu/packages/messaging.scm (profanity): Update to 0.13.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tanguy Le Carrour
2022-10-11gnu: libstrophe: Update to 0.12.2....* gnu/packages/messaging.scm (libstrophe): Update to 0.12.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Tanguy Le Carrour
2022-10-11gnu: mmg: Add dependency on Perl....* gnu/packages/graphics.scm (mmg)[native-inputs]: Add PERL. Ludovic Courtès
2022-10-11gnu: gtkwave: Update to 3.3.113....* gnu/packages/fpga.scm (gtkwave): Update to 3.3.113. [inputs]: Use new style. [arguments]: Use gexp. Signed-off-by: Ludovic Courtès <ludo@gnu.org> jgart
2022-10-11gnu: python-pydyf: Update to 0.3.0....* gnu/packages/pdf.scm (python-pydyf): Update to 0.3.0. [arguments]: Add phases to replace build and install phases. [native-inputs]: Add python-flit-core, python-pypa-build. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Michael Rohleder
2022-10-11gnu: emacs-guix: Remove input labels....* gnu/packages/emacs-xyz.scm (emacs-guix)[inputs]: Remove labels. Ludovic Courtès
2022-10-11gnu: emacs-guix: Update to cf5b7a4....* gnu/packages/emacs-xyz.scm (emacs-guix): Update to cf5b7a4. [home-page]: Update. Ludovic Courtès
2022-10-11Revert "guix system: Remove unused 'read-operating-system' procedure."...This reverts commit d11a432adffe9308eafec6b77cddd3145029109e. The 'read-operating-system' is used in Emacs-Guix. Ludovic Courtès
2022-10-11git: Factorize 'commit-id?' predicate....* guix/git.scm (commit-id?): New procedure, copied from (guix swh). (resolve-reference): Use it instead of inline code. * guix/inferior.scm (channel-full-commit): Likewise. Ludovic Courtès
2022-10-11guix import: Add a blank line after each package definition....Starting from commit 371a83b764c4993d198666e1674454eecbefcdf1, 'guix import crate -r' (or similar) would no longer print a blank line in between definitions. This patch fixes it. Reported by jgart <jgart@dismail.de>. * guix/scripts/import.scm (guix-import): Add second 'newline' call. Ludovic Courtès
2022-10-11system: operating-system: Make the timezone field default to Etc/UTC....* gnu/system.scm (<operating-system>) [timezone]: Default to "Etc/UTC". Maxim Cournoyer
2022-10-11services: slim-service-type: Do not extend profile with xterm....This is not done for gdm-service-type, so do not do it here either, for consistency. Perhaps that change had been motivated by the fact that using ratpoison without a default terminal makes for a poor user experience (one cannot even view the help screen without a terminal); this was fixed with the preceding commit. * gnu/services/xorg.scm (slim-service-type) [profile-service-type]: Remove extension. Maxim Cournoyer
2022-10-11gnu: ratpoison: Reference xterm absolutely....* gnu/packages/ratpoison.scm (ratpoison) [configure-flags]: Specify the '--with-xterm' configure flag. [inputs]: Add xterm. Maxim Cournoyer
2022-10-11gnu: ratpoison: Use gexps and remove input labels....* gnu/packages/ratpoison.scm (ratpoison) [phases]: Use gexps. [inputs, native-inputs]: Remove input labels. Maxim Cournoyer
2022-10-11gnu: icedove: Use gexps....* gnu/packages/gnuzilla.scm (icedove) [arguments]: Use gexps, adjusting phases as needed. Maxim Cournoyer
2022-10-11gnu: libreoffice: Move inputs below arguments and fix indentation....* gnu/packages/libreoffice.scm (libreoffice) Fix indentation. [native-inputs, inputs]: Move below... [arguments]: ... this field. Maxim Cournoyer
2022-10-11gnu: Update guile-eris to 1.0.0....* gnu/packages/guile-xyz.scm (guile-eris): Update to 1.0.0. Signed-off-by: Christopher Baines <mail@cbaines.net> pukkamustard
2022-10-11gnu: Add python-cobib....* gnu/packages/python-xyz.scm (python-cobib): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net> M