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2023-11-03gnu: r-aseb: Update to 1.46.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aseb): Update to 1.46.0. Change-Id: I375a4de7c9836fbf851ca033e7ab4ce25cb857a0
2023-11-03gnu: r-asafe: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-asafe): Update to 1.28.0. Change-Id: If9d94cbb09fb2872fdf5224df95495666c2820c9
2023-11-03gnu: r-arrayquality: Update to 1.80.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrayquality): Update to 1.80.0. Change-Id: I0ef5275399cc423785dfbb30b00ee5148f18906e
2023-11-03gnu: r-arraymvout: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arraymvout): Update to 1.60.0. Change-Id: I42b04c02fd24de6898c6be7c18abeeb534737860
2023-11-03gnu: r-arrayqualitymetrics: Update to 3.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): Update to 3.58.0. Change-Id: I5ee044a089e154f13250890ef09f06c481598296
2023-11-03gnu: r-arrayexpress: Update to 1.62.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-arrayexpress): Update to 1.62.0. Change-Id: I4d96c4ea89cd51426b0405d26818062751c43d71
2023-11-03gnu: r-antiprofiles: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-antiprofiles): Update to 1.42.0. Change-Id: Iee706af570ae789b897f4cfb0a53a474f8615d12
2023-11-03gnu: r-annmap: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annmap): Update to 1.44.0. Change-Id: Id960993131170a85231f5b21b354d67b5466ed99
2023-11-03gnu: r-aneufinder: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.30.0. Change-Id: Ib57882838b947c014b2fad4c8c829d91c7aa6a17
2023-11-03gnu: r-altcdfenvs: Update to 2.64.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-altcdfenvs): Update to 2.64.0. Change-Id: I10775d097dfce34d8b3d2846971a4318368a871f
2023-11-03gnu: r-alpsnmr: Update to 4.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.4.0. Change-Id: If005837c237e26e32dda5c69a4bfdc9c20d7a0b1
2023-11-03gnu: r-alphabeta: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.16.0. Change-Id: I6abd11e9a22d73737975c660e565944aead7e14b
2023-11-03gnu: r-alevinqc: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.18.0. Change-Id: I96c53e6ac99d375da3a87cdc3ffad888f82bbb80
2023-11-03gnu: r-aldex2: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.34.0. [propagated-inputs]: Add r-directlabels, r-lattice, and r-latticeextra. Change-Id: Ibd4295392b188034231f54d129af02318510932e
2023-11-03gnu: r-anvil: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anvil): Update to 1.14.0. Change-Id: I154aa331580809b550f33a13cfcebecbcc165820
2023-11-03gnu: r-annotationhubdata: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.32.0. Change-Id: Ic55ce4dbad0dd504760a40ef1ac4386318b262cd
2023-11-03gnu: r-ancombc: Update to 2.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.4.0. Change-Id: Idccde9e571c9ee7b0014bbe4f7328e5b37d764d9
2023-11-03gnu: r-anaquin: Update to 2.26.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.26.0. Change-Id: I74a39d84856646bcbe0bbc9006c92095145017be
2023-11-03gnu: r-amaretto: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.18.0. Change-Id: I007bd666a0344d206b418d0c45a816518c5dc65c
2023-11-03gnu: r-amplican: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-amplican): Update to 1.24.0. Change-Id: Ifc0a8d5d2a98a4025ba85759bce75a452275f065
2023-11-03gnu: r-amountain: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-amountain): Update to 1.28.0. Change-Id: If5cdf59afc38a70335b682b0687b63f33db77a63
2023-11-03gnu: r-airpart: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-airpart): Update to 1.10.0. Change-Id: Iafee8663fb558b5d73f662a4ea1fb0a1999e109e
2023-11-03gnu: r-aims: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aims): Update to 1.34.0. Change-Id: I494a799b261fedc20204837edbd9017e540de81f
2023-11-03gnu: r-adductomicsr: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.18.0. Change-Id: I4149f8e884c6e8486c5006103c5dd2da82a070e1
2023-11-03gnu: r-agilp: Update to 3.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-agilp): Update to 3.34.0. Change-Id: Iae3bbb41a891da0da550ad66ce686fe53fc35be7
2023-11-03gnu: r-aggregatebiovar: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.12.0. Change-Id: I4fc26155d43bf89bc5c937d59bae3960d79f1429
2023-11-03gnu: r-agdex: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-agdex): Update to 1.50.0. Change-Id: I2e9bc52fc339ce7300f13485a16f7e674ed7cb73
2023-11-03gnu: r-affyrnadegradation: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.48.0. Change-Id: I2f12a2ada8aa83851a25cd16884c2c72e2ab3f02
2023-11-03gnu: r-affyplm: Update to 1.78.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.78.0. Change-Id: I96fe37a22d07abc00125df0a229cf7d2d0d136c7
2023-11-03gnu: r-affylmgui: Update to 1.76.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.76.0. Change-Id: I169ee4e2a1462140fe2a203ef4a934fcf386a566
2023-11-03gnu: r-affyilm: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.54.0. Change-Id: I1b5989c62da7ce108d3e8ec344fd47a7b33f2856
2023-11-03gnu: r-affixcan: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.20.0. Change-Id: Ica782aa7cb2603374425e2abc921ade43592aa02
2023-11-03gnu: r-adsplit: Update to 1.72.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.72.0. Change-Id: I2851c235df8c18ae50b931736d65f02aa4403d39
2023-11-03gnu: r-adimpute: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.12.0. Change-Id: I46dae4da51b0a47b8cdffdcd919828415b32d131
2023-11-03gnu: r-adamgui: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.18.0. Change-Id: Iabe992f09b65994038340e564de3be62ffdae5e3
2023-11-03gnu: r-adam: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adam): Update to 1.18.0. Change-Id: I33e560dba8bade0b474b8911c82f71bd768e37a5
2023-11-03gnu: r-adacgh2: Update to 2.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.42.0. Change-Id: I3a08c5e0c0651c3cb35329de5ce97f660e48ae43
2023-11-03gnu: r-absseq: Update to 1.56.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-absseq): Update to 1.56.0. Change-Id: I417b2bc58c196fce30a389ae3b999306a0b83893
2023-11-03gnu: r-abarray: Update to 1.70.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abarray): Update to 1.70.0. Change-Id: Ibdbf0deb2efad33dffee619c4f8a80f90c815d37
2023-11-03gnu: r-debcam: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-debcam): Update to 1.20.0. [arguments]: Remove old comment and enable tests. [inputs]: Replace icedtea with openjdk11. Change-Id: Id8afa7e53d69fa7767901249cab58fe5555d0e48
2023-11-03gnu: Add r-hpo-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hpo-db): New variable. Change-Id: I4de4bde150f5ff5634e83a6e2e715cddd30db9b2
2023-11-03gnu: Add r-mpo-db.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mpo-db): New variable. Change-Id: I88f21ac585d10f2763656b458f015b95a8a8bcfe
2023-11-03gnu: Add r-fancova.Ricardo Wurmus
* gnu/packages/cran.scm (r-fancova): New variable. Change-Id: I9bfef352be86c08707edfee0bfb171094114d158
2023-11-03gnu: Add r-collapse.Ricardo Wurmus
* gnu/packages/cran.scm (r-collapse): New variable. Change-Id: Ib6690a85987e14930057ed960fdd229706b0c35d
2023-11-03gnu: Add r-msexperiment.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msexperiment): New variable. Change-Id: I707addc076f36bab7f6e96953f5fbd614580825e
2023-11-03gnu: Add r-sparsearray.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): New variable. Change-Id: Ibc5b5a518206d492dd5b912294da3967881b5ccd
2023-11-03gnu: Add r-metabocoreutils.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-metabocoreutils): New variable. Change-Id: I58880565005e05a8a87c97e4611cdba8489515ab
2023-11-03guix: Upgrade to Bioconductor 3.18.Ricardo Wurmus
* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.18. * guix/import/cran.scm (%bioconductor-version): Same. Change-Id: Ic3fc2e6ab6b5f6f6e55662f81baee67391158c5b
2023-10-29system: vm: Include the cirrus driver in the initrd.Tobias Geerinckx-Rice
This is Ludo's suggestion at <https://issues.guix.gnu.org/36069#26>, with an added guard against duplicates and a tweaked comment. * gnu/system/vm.scm (virtualized-operating-system): Add "cirrus" to the list of INITRD-MODULES. Co-authored-by: Ludovic Courtès <ludo@gnu.org> Change-Id: I1a86286586eee0b8c39706544778c7911a86da33
2023-11-03gnu: Add r-miamiplot.Afkhami, Navid
* gnu/packages/bioinformatics.scm (r-miamiplot): New variable. Change-Id: I41a3a951c6f1835800301e4c168eeeb0dd299f06 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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