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2019-12-15gnu: emacs-undercover: Update to 0.6.1.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-undercover): Update to 0.6.1.
2019-12-15gnu: emacs-fill-column-indicator: Update to 1.90.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-fill-column-indicator): Update to 1.90.
2019-12-15gnu: emacs-direnv: Update to 2.0.0.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-direnv): Update to 2.0.0.
2019-12-15gnu: emacs-async: Update to 1.9.4.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-async): Update to 1.9.4.
2019-12-15gnu: emacs-doom-modeline: Update to 2.8.2.Brett Gilio
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 2.8.2.
2019-12-15gnu: diffoscope: Update to 133.Vagrant Cascadian
* gnu/packages/diffoscope (diffoscope): Update to 133.
2019-12-15gnu: abcl: Update to 1.6.0.Carlo Zancanaro
* gnu/packages/java.scm (abcl): Update to 1.6.0. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-12-15gnu: texinfo: Add missing include.Mathieu Othacehe
* gnu/packages/texinfo.scm (info-reader): Fix missing include, introduced by f5d670606354728a453b8cc962c4f85516007d13.
2019-12-15gnu: Add theorafile.Pierre Neidhardt
* gnu/packages/video.scm (theorafile): New variable.
2019-12-15gnu: info-reader: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/texinfo.scm (info-reader)[arguments]: Add keep-only-info-reader phase to inherited texinfo package phases, so that fix-cross-configure phase is preserved.
2019-12-15gnu: r-destiny: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-destiny): Update to 3.0.0. [propagated-inputs]: Add r-ggplot-multistats, r-irlba, r-knn-covertree, r-pcamethods, r-rcpphnsw, r-rspectra, r-singlecellexperiment, r-tidyr, and r-tidyselect; remove r-igraph.
2019-12-15gnu: r-siggenes: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-siggenes): Update to 1.60.0.
2019-12-15gnu: r-bumphunter: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bumphunter): Update to 1.28.0.
2019-12-15gnu: r-minfi: Update to 1.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minfi): Update to 1.32.0.
2019-12-15gnu: r-methylumi: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-methylumi): Update to 2.32.0.
2019-12-15gnu: r-lumi: Update to 2.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lumi): Update to 2.38.0.
2019-12-15gnu: r-linnorm: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-linnorm): Update to 2.10.0.
2019-12-15gnu: r-ioniser: Update to 2.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ioniser): Update to 2.10.0.
2019-12-15gnu: r-triform: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-triform): Update to 1.28.0.
2019-12-15gnu: r-varianttools: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-varianttools): Update to 1.28.0.
2019-12-15gnu: r-heatplus: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.0.
2019-12-15gnu: r-gosemsim: Update to 2.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.12.0.
2019-12-15gnu: r-anota: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-anota): Update to 1.34.0.
2019-12-15gnu: r-sigpathway: Update to 1.54.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sigpathway): Update to 1.54.0.
2019-12-15gnu: r-fgsea: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fgsea): Update to 1.12.0.
2019-12-15gnu: r-dose: Update to 3.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.12.0.
2019-12-15gnu: r-enrichplot: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.6.0. [propagated-inputs]: Remove r-upsetr.
2019-12-15gnu: r-clusterprofiler: Update to 3.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.0.
2019-12-15gnu: r-mlinterfaces: Update to 1.66.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.0.
2019-12-15gnu: r-annaffy: Update to 1.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.58.0.
2019-12-15gnu: r-a4core: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4core): Update to 1.34.0.
2019-12-15gnu: r-a4classif: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4classif): Update to 1.34.0.
2019-12-15gnu: r-a4preproc: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4preproc): Update to 1.34.0.
2019-12-15gnu: r-a4reporting: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4reporting): Update to 1.34.0.
2019-12-15gnu: r-a4base: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4base): Update to 1.34.0.
2019-12-15gnu: r-a4: Update to 1.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-a4): Update to 1.34.0.
2019-12-15gnu: r-abseqr: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abseqr): Update to 1.4.0.
2019-12-15gnu: r-bacon: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bacon): Update to 1.14.0.
2019-12-15gnu: r-rgadem: Update to 2.34.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rgadem): Update to 2.34.0.
2019-12-15gnu: r-motiv: Update to 1.42.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motiv): Update to 1.42.0. [propagated-inputs]: Add r-genomicranges.
2019-12-15gnu: r-motifstack: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-motifstack): Update to 1.30.0. [propagated-inputs]: Add r-ggplot2.
2019-12-15gnu: r-genomicscores: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 1.10.0.
2019-12-15gnu: r-atacseqqc: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.1.
2019-12-15gnu: r-gofuncr: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gofuncr): Update to 1.6.0.
2019-12-15gnu: r-abaenrichment: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abaenrichment): Update to 1.16.0.
2019-12-15gnu: r-annotationfuncs: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationfuncs): Update to 1.36.0.
2019-12-15gnu: r-annotationtools: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationtools): Update to 1.60.0.
2019-12-15gnu: r-allelicimbalance: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-allelicimbalance): Update to 1.24.0.
2019-12-15gnu: r-aucell: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-aucell): Update to 1.8.0. [propagated-inputs]: Add r-biocgenerics and r-s4vectors.
2019-12-15gnu: r-ebimage: Update to 4.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.28.1.
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