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2023-12-16gnu: linux-libre: Update to 6.6.7.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.6-version): Update to 6.6.7. (linux-libre-6.6-pristine-source): Update hash. Change-Id: I72ffbc67e66f9e4330b87bb189b2a5d29abcdf0b
2023-12-16gnu: python-msgpack-transitional: Update code comment.Leo Famulari
* gnu/packages/python-xyz.scm (python-msgpack-transitional): Update comment. Change-Id: I93afe78c40ac87c6e5147d286cf257ec9a8afd68
2023-12-16gnu: Remove python-msgpack-1.0.2.Leo Famulari
This package is no longer used in Guix. * gnu/packages/python-xyz.scm (python-msgpack-1.0.2): Remove variable. Change-Id: I6216003e6312c5587ae3471ba9870865ee68f680
2023-12-16gnu: Borg: Update to 1.2.7.Leo Famulari
* gnu/packages/backup.scm (borg): Update to 1.2.7. [inputs]: Replace python-msgpack-1.0.2 with python-msgpack. Change-Id: I8529d737d90105f877f1c099f4b3afa9b0ed9fa8
2023-12-16guix: import: Report go version for go importer.Efraim Flashner
* guix/import/go.scm (go-package, go.mod-go-version): New procedures. (go-module->guix-package): Add the #:go keyword in the generated package definition if the required go is newer than the default go. * tests/go.scm (mock-http-get): Use gexps for package arguments. Change-Id: I8d005740a442330ac307a40a53764c803ceffc4f
2023-12-16guix: import: Don't include indirect dependencies in go.Efraim Flashner
* guix/import/go.scm (parse-go.mod)[define-peg-patern require]: Adjust the peg pattern to reject lines with the 'indirect' comment in them. Change-Id: I9618bbaa1cb8c6549ced875e3c8d32afc72c3b9b
2023-12-16gnu: fpc: Add support for aarch64-linux.Efraim Flashner
* gnu/packages/pascal.scm (fpc-bootstrap-aarch64): New variable. (fpc)[arguments]: Add cases for aarch64-linux. [native-inputs]: Add case for fpc-binary for aarch64-linux. Change-Id: I03630f9b36c10636db23c00aaf8f72b9ddf2390d
2023-12-16gnu: fpc: Add support for powerpc64le-linux.Efraim Flashner
* gnu/packages/pascal.scm (fpc-bootstrap-powerpc64le): New variable. (fpc)[arguments]: Add cases for powerpc64le-linux. [native-inputs]: Add case for fpc-binary for powerpc64le-linux. Change-Id: I4f12003b35ef60764e7e25cc14aed7d243c6fe0f
2023-12-16gnu: fpc: Add support for powerpc-linux.Efraim Flashner
* gnu/packages/pascal.scm (fpc-bootstrap-powerpc): New variable. (fpc)[arguments]: Add cases for powerpc-linux. [native-inputs]: Add case for fpc-binary for powerpc-linux. Change-Id: I0d4d9dda9d4c8f70ff20031ab94f1dc439df88e2
2023-12-16gnu: fpc: Patch more dynamic-linker paths.Efraim Flashner
* gnu/packages/pascal.scm (fpc)[arguments]: Patch more paths to the dynamic-linker in the 'configure phase. Change-Id: I0eebf1271d24e22839db0a8fd96385408067fdbf
2023-12-16gnu: fpc: Fix building on i686-linux.Efraim Flashner
* gnu/packages/pascal.scm (fpc)[source]: Add patch. * gnu/packages/patches/fpc-glibc-2.34-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Change-Id: I6fde62de63171d7e16754b36db460f4073b1979d
2023-12-16gnu: valgrind: Mark as unsupported on i586-gnu.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind)[supported-systems]: Remove i586-gnu from supported systems. Change-Id: I260b9b343c30da81d0420c92431d56d22c260cc4
2023-12-16gnu: valgrind: Use correct glibc.Efraim Flashner
* gnu/packages/valgrind.scm (valgrind/interactive)[inputs]: Replace glibc with libc-for-target. Change-Id: If8e428a12647c8aeb36fa90f36d7c8d12055f2b9
2023-12-16gnu: r-with-tests: Update to 4.3.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.2. Change-Id: Ifd949eb363582e533d629e573ea98c10edf127c3
2023-12-10bash completion: Complete ‘guix style -f’ with files.Tobias Geerinckx-Rice
* etc/completion/bash/guix (_guix_is_dash_f): Recognise ‘--whole-file’ as a member of the ‘-f’ family. (_guix_complete): Add a new clause for ‘guix style’. Reported by cmiller in #guix. Change-Id: I3f55f7fd7fb8610dc13770ebfe70d9f65c1497af
2023-12-10daemon: Sacrifice builders on OOM.Tobias Geerinckx-Rice
* nix/libstore/build.cc (DerivationGoal::runChild): Maximise our OOM score adjustment. Change-Id: I418c763b499ca16e1ffe3c6033319112b9744f51
2023-12-10gnu: inxi-minimal: Update to 3.3.31-2.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (inxi-minimal): Update to 3.3.31-2. Change-Id: I6645cdc0870396ef6726bed1e24af534a4e03503
2023-12-10gnu: mediainfo: Update to 23.11.Tobias Geerinckx-Rice
* gnu/packages/video.scm (mediainfo): Update to 23.11. Change-Id: Ife3dad58749d292c04d6b5cca8fb0eabf3a7a02a
2023-12-10gnu: libmediainfo: Update to 23.11.Tobias Geerinckx-Rice
* gnu/packages/video.scm (libmediainfo): Update to 23.11. Change-Id: Id7967fb5ed1304055ddeea73b550bd9c5e7ec6ec
2023-12-10gnu: iperf: Update to 3.16.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (iperf): Update to 3.16. Change-Id: I8463174ba4a0773ef62d3e888332a223cefad56e
2023-12-15gnu: r-tximeta: Update to 1.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.20.1. Change-Id: Id29bdc8c00f957854ed5ba38c2cbbb91e04bbf78
2023-12-15gnu: r-biomvrcns: Update to 1.42.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvrcns): Update to 1.42.2. Change-Id: I956718d0ecb503546564434fbea82a886d4de9f4
2023-12-15gnu: r-basilisk: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.14.1. Change-Id: I7c05a536a58ca7bc7d24fdb5f39a420611bebf45
2023-12-15gnu: r-basilisk-utils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.14.1. Change-Id: Icda5e71c0a709e2de4c6303774c37224a9476d62
2023-12-15gnu: r-gviz: Update to 1.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.46.1. Change-Id: I10e68ee45be2cd2cddc217e75ee6667323c4dd57
2023-12-15gnu: r-mscoreutils: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mscoreutils): Update to 1.14.1. Change-Id: Ia978e23f1f0bf5a58ffa2c76a65c5f9982629aac
2023-12-15gnu: r-sparsearray: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsearray): Update to 1.2.2. Change-Id: I96f367bf5c39c973e1c5fad3b9620bfcaf88417a
2023-12-15gnu: r-scater: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scater): Update to 1.30.1. Change-Id: I5e497b654bc4a26adc6d956f728f31ae631a239c
2023-12-15gnu: r-s4vectors: Update to 0.40.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.40.2. Change-Id: I6201d17fa2a6be618feb26ad632b9249f87d86c5
2023-12-15gnu: r-ucell: Update to 2.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ucell): Update to 2.6.2. Change-Id: Ie08960a237ad1515332794b23c2bd31e94299dfe
2023-12-15gnu: r-variancepartition: Update to 1.32.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.32.2. [propagated-inputs]: Add r-matrixstats. Change-Id: I436a1db36ad910aec0fac87150c62735f6509575
2023-12-15gnu: r-flowworkspace: Update to 4.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.14.1. Change-Id: I2e950e77842add2eebeeffac2492ba0ef1aa6422
2023-12-15gnu: r-xcms: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 4.0.1. Change-Id: I98dd730bb959d2483164177a3e534915d13fee44
2023-12-15gnu: r-genomicscores: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.14.2. Change-Id: I00417ef0c2f9657ec39690baa52a1cd075fb69c6
2023-12-15gnu: r-dose: Update to 3.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.28.2. [propagated-inputs]: Remove r-hpo-db and r-mpo-db; add r-yulab-utils. Change-Id: Ia29d318cac9b1e261fb89fc4d15f8b40ec3583f3
2023-12-15gnu: r-lefser: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lefser): Update to 1.12.1. Change-Id: Iac94395b267e925116929d48abb3c28cff31504e
2023-12-15gnu: r-zellkonverter: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.12.1. Change-Id: I0db7450b3eff32e739ea3b806dde96114caba440
2023-12-15gnu: r-variantannotation: Update to 1.48.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.1. Change-Id: I51e6a6db61fc4782823f9a7f85345742b8c7ab72
2023-12-15gnu: r-trackviewer: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.38.1. Change-Id: I3ec74e7c37830e7a0b3b12311e304cc2e4fe322e
2023-12-15gnu: r-tcgautils: Update to 1.22.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgautils): Update to 1.22.2. Change-Id: I9c33a55076c672fa3a6ff6c97675dee16d186a39
2023-12-15gnu: r-rhdf5filters: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5filters): Update to 1.14.1. Change-Id: I260973b51c3a8e895339d1c4b6fbed8f66ccb50c
2023-12-15gnu: r-rhdf5: Update to 2.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.46.1. Change-Id: Ia4781476ab82dd867a707e98767d8ee12d208003
2023-12-15gnu: r-msnbase: Update to 2.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.28.1. Change-Id: I25fdd2662ab60939732cdee51fc2b53916f1d705
2023-12-15gnu: r-genomeinfodb: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.38.2. Change-Id: I17852db375cc7e833d100998c89751e68f3d4362
2023-12-15gnu: r-edger: Update to 4.0.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-edger): Update to 4.0.3. Change-Id: I97d73da131092effbf2404e710389d863ba39889
2023-12-15gnu: r-champ: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-champ): Update to 2.32.0. Change-Id: I2058a0c0b086452ccfae5ef84884aa0b9cf51abb
2023-12-15gnu: r-annotationdbi: Update to 1.64.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.64.1. Change-Id: If7f6bef70b3f4cc59c81ea68632b36c4b8449a73
2023-12-15gnu: r-infercnv: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-infercnv): Update to 1.18.1. Change-Id: I99b0f17246ef267a58f87c1719066b1b4f198d8b
2023-12-15gnu: r-dmrcate: Update to 2.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrcate): Update to 2.16.1. [propagated-inputs]: Remove r-dss. Change-Id: I183971826201b19cc88eb2768716aa2e165aba1f
2023-12-15gnu: r-degreport: Update to 1.38.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-degreport): Update to 1.38.5. [propagated-inputs]: Add r-dendextend and r-stringi. Change-Id: I73fe47489449b46406b879dba0318d02dc3c7614
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