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2017-05-21gnu: python-biom-format: Update to 2.1.6.Ben Woodcroft
* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6. [propagated-inputs]: Add python-pandas.
2017-05-21gnu: python-future: Update to 0.16.0.Ben Woodcroft
* gnu/packages/python.scm (python-future): Update to 0.16.0.
2017-05-21gnu: ccid: Update to 1.4.27.Marius Bakke
* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
2017-05-21gnu: fio: Update to 2.20.Marius Bakke
* gnu/packages/benchmark.scm (fio): Update to 2.20. [arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
2017-05-21gnu: nano: Update to 2.8.4.Marius Bakke
* gnu/packages/nano.scm (nano): Update to 2.8.4.
2017-05-21gnu: vim: Update to 8.0.0600.Marius Bakke
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
2017-05-21gnu: vim-full: Disable failing test.Marius Bakke
* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
2017-05-21doc: Replace fingerprint of OpenPGP signing key.Ludovic Courtès
* doc/guix.texi (OPENPGP-SIGNING-KEY-ID): Change to Ludo's key.
2017-05-21Update NEWS.Ludovic Courtès
2017-05-21tests: ssh: Use 'guile2.0-ssh'.Ludovic Courtès
Fixes a regression introduced in 4d8806c3d662c74e6d48d0f0d6ce423fce9a3a08. * gnu/tests/ssh.scm (run-ssh-test): Use GUILE2.0-SSH instead of GUILE-SSH.
2017-05-21guix system: Don't warn about old distros for "guix system init".Ludovic Courtès
* guix/scripts/system.scm (process-action): Don't call 'warn-about-old-distro' when ACTION is 'init' or 'build'.
2017-05-21gnu: linux-libre: Update to 4.11.2.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2. (%linux-libre-hash): Update hash.
2017-05-21gnu: linux-libre: Remove CONFIG_SMC from x86 kernel configurations.Mark H Weaver
This removes support for the "shared memory communications over RDMA" (SMC-R) networking protocol, which was added in 4.11 without the knowledge of the RDMA maintainers, and which is thought to contain significant security flaws. For details, see <https://lwn.net/Articles/723081> and <https://lwn.net/Articles/723070>. * gnu/packages/aux-files/linux-libre/4.11-x86_64.conf, gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC. 723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
2017-05-21gnu: linux-libre@4.9: Update to 4.9.29.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
2017-05-21gnu: linux-libre@4.4: Update to 4.4.69.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
2017-05-21guix system: Increase image size for 'guix system vm'.Ludovic Courtès
This is a followup to 9a1bfe764859365b6726f168da95b88a2d22403b. * guix/scripts/system.scm (system-derivation-for-action): Add 40MiB to the default size for 'vm'.
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.Ludovic Courtès
This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary.
2017-05-21vm: Increase default disk size to account for ESP partition.Marius Bakke
Fixes a test regression introduced by ecf5d5376979fadd971559367bf553df89fcc62b. * gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-21gnu: unionfs-fuse-static: Remove 'unionfsctl' executable.Ludovic Courtès
This avoids pulling in glibc & co. Fixes a regression introduced in 2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable did not exist in unionfs-fuse 0.26). * gnu/packages/linux.scm (unionfs-fuse/static)[arguments] <post-install>: Remove 'unionfsctl' binary.
2017-05-21vm: Increase default disk size to account for ESP partition.Marius Bakke
Fixes a test regression introduced by ecf5d5376979fadd971559367bf553df89fcc62b. * gnu/system/vm.scm (system-qemu-image/shared-store-script): 30MiB -> 70MiB.
2017-05-20Update NEWS.Ricardo Wurmus
2017-05-20gnu: ghostscript: Add TODO comment about bundled jbig2dec.Leo Famulari
* gnu/packages/ghostscript.scm (ghostscript): Add comment.
2017-05-20gnu: jbig2dec: Fix CVE-2017-{7885,7975,7976}.Leo Famulari
* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch, gnu/packages/patches/jbig2dec-CVE-2017-7975.patch, gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/image.scm (jbig2dec)[source]: Use them.
2017-05-20gnu: pcsc-lite: Update to 1.8.21.Marius Bakke
* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
2017-05-20gnu: icedtea@3: Add aarch32-drop.Leo Famulari
* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
2017-05-20gnu: icedtea@3: Update to 3.4.0 [security fixes].Leo Famulari
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
2017-05-20gnu: imagemagick: Update to 6.9.8-6.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
2017-05-20download: Prune the ImageMagick mirror list.Leo Famulari
These sites' TLS certificates are invalid. * guix/download.scm (%mirrors) <imagemagick>: Remove mirrors-{au,ru,uk}.go-parts.com.
2017-05-20gnu: guix: Add 'guile2.0-guix'.Ludovic Courtès
* gnu/packages/package-management.scm (guile2.0-guix): New variable.
2017-05-20gnu: libssh, guile-ssh: Add a "debug" output.Ludovic Courtès
* gnu/packages/ssh.scm (libssh)[outputs]: New field. (guile-ssh)[outputs]: New field.
2017-05-20pack: Use 'guile2.0-json' when building with Guile 2.0.Ludovic Courtès
Fixes <http://bugs.gnu.org/27005>. Reported by Pjotr Prins <pjotr.public12@thebird.nl>. Fixes a regression introduced in commit 2252f087d4bd450ab41a71379320467887edfc0f. * guix/scripts/pack.scm (docker-image)[json]: New variable. [build]: Use it.
2017-05-20gnu: icedtea@2: Update to 2.6.10 [security fixes].Leo Famulari
Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}. * gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
2017-05-20gnu: dropbear: Update to 2017.75 [fixes CVE-2017-{9078,9079}].Leo Famulari
* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
2017-05-20system: Use Guile 2.2 rather than 2.0 in %BASE-PACKAGES.Ludovic Courtès
* gnu/system.scm (%base-packages): Change GUILE-2.0 to GUILE-2.2.
2017-05-20pack: Use 'guile2.0-json' when building with Guile 2.0.Ludovic Courtès
Fixes <http://bugs.gnu.org/27005>. Reported by Pjotr Prins <pjotr.public12@thebird.nl>. Fixes a regression introduced in commit 2252f087d4bd450ab41a71379320467887edfc0f. * guix/scripts/pack.scm (docker-image)[json]: New variable. [build]: Use it.
2017-05-20vm: Add UEFI loader to disk images.Marius Bakke
* gnu/build/vm.scm (install-efi): New procedure. (initialize-hard-disk): Generate EFI blob when ESP is present. * gnu/system/vm.scm (qemu-image): Append 40MiB EFI System Partition. (cherry picked from commit ecf5d5376979fadd971559367bf553df89fcc62b)
2017-05-20vm: Support creating FAT partitions.Marius Bakke
* gnu/build/vm.scm (create-ext-file-system, create-fat-file-system): New procedures. (format-partition): Use them. Error for unknown file systems. * gnu/system/vm.scm (qemu-image): Include DOSFSTOOLS. * gnu/system/linux-initrd.scm (base-initrd): Always add nls_is8859-1.ko.
2017-05-20vm: Support arbitrary partition flags.Marius Bakke
* gnu/build/vm.scm (<partition>): Change BOOTABLE? to FLAGS. (initialize-partition-table): Pass each flag to parted. (initialize-hard-disk): Locate boot partition. * gnu/system/vm.scm (qemu-image): Adjust partition flags.
2017-05-20gnu: guile-ssh: Fix potential double-free/use-after-free issue.Ludovic Courtès
Fixes <http://bugs.gnu.org/26976>. Reported by Mark H Weaver <mhw@netris.org>. * gnu/packages/patches/guile-ssh-double-free.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
2017-05-20modules: Add more source-less modules.Ludovic Courtès
* guix/modules.scm (%source-less-modules): New variable. (source-module-dependencies): Use it.
2017-05-20publish: Fix narinfo rendering for already-compressed items.Ludovic Courtès
Fixes <http://bugs.gnu.org/26975>. Reported by Mark H Weaver <mhw@netris.org>. * guix/scripts/publish.scm (bake-narinfo+nar): Pass #f as the 2nd argument to 'stat' and properly handle #f. * tests/publish.scm (wait-for-file): New procedure. ("with cache"): Remove 'wait-for-file' procedure. ("with cache, uncompressed"): New test.
2017-05-20union: Gracefully handle dangling symlinks in the input.Ludovic Courtès
Fixes <http://bugs.gnu.org/26949>. Reported by Pjotr Prins <pjotr.public12@thebird.nl>. * guix/build/union.scm (file-is-directory?): Return #f when FILE does not exist or is a dangling symlink. (file=?): Pass #f as a second argument to 'stat'; return #f when both ST1 or ST2 is #f. * tests/profiles.scm (test-equalm): New macro. ("union vs. dangling symlink"): New test.
2017-05-20services: user-homes: Do not create home directories marked as no-create.Ludovic Courtès
Fixes a bug whereby GuixSD would create the /nonexistent directory, from user 'nobody', even though it has 'create-home-directory?' set to #f. * gnu/build/activation.scm (activate-users+groups): Add comment for \#:create-home?. (activate-user-home)[ensure-user-home]: Skip when CREATE-HOME? is #f or SYSTEM? is #t. * gnu/tests/base.scm (run-basic-test)["no extra home directories"]: New tests.
2017-05-20install: Enable SSH in installation image.Marius Bakke
* gnu/system/install.scm (%installation-services): Add OPENSSH-SERVICE-TYPE. * doc/guix.texi (Preparing for Installation)[Networking]: Document it.
2017-05-20services: openssh: Don't depend on networking.Marius Bakke
* gnu/services/ssh.scm (openssh-shepherd-service): Drop requirement.
2017-05-20maint: The 'release' target builds a VM image.Leo Famulari
* gnu/system/examples/vm-image.tmpl: New file. * Makefile.am (GUIXSD_VM_SYSTEMS, GUIXSD_VM_IMAGE_BASE, GUIXSD_VM_IMAGE_SIZE): New variables. (release): Add logic to build a VM image. (EXAMPLES): Add 'gnu/system/examples/vm-image.tmpl'. * doc/guix.texi (Running GuixSD in a VM, Installing GuixSD in a VM): Mention the pre-built VM image.
2017-05-20gnu: aspell: 'dict-dir' set to ~/.guix-profile/lib/aspell or $ASPELL_DICT_DIR.Ludovic Courtès
See <https://bugs.gnu.org/25836> for background. * gnu/packages/patches/aspell-default-dict-dir.patch: New file. * gnu/packages/aspell.scm (aspell)[source](patches): New field. [native-search-paths]: New field. * gnu/local.mk (dist_patch_DATA): Add it.
2017-05-20build: Compile stackage only if 'guile-json' is available.Alex Kost
Fixes <http://bugs.gnu.org/26860>. This is a followup to commit 3089b5d3f5a31b191b68ce3aa9255b646940b642. * Makefile.am (MODULES): Move "guix/scripts/import/stackage.scm" within 'if HAVE_GUILE_JSON'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-05-20gnu: qemu: Fix CVE-2017-7493.Leo Famulari
* gnu/packages/patches/qemu-CVE-2017-7493.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu)[source]: Use it.
2017-05-20profiles: Add elapsed time to manual-database hook to output message.Maxim Cournoyer
* guix/profiles.scm (manual-database): Add elapsed time to manual-database hook to output message. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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