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2019-06-22gnu: youtube-dl: Update to 2019.06.21....* gnu/packages/video.scm (youtube-dl): Update to 2019.06.21. Tobias Geerinckx-Rice
2019-06-22gnu: scrot: Name source checkout....* gnu/packages/xdisorg.scm (scrot)[source]: Add FILE-NAME. Tobias Geerinckx-Rice
2019-06-22gnu: python-lmdb: Update to 0.95....* gnu/packages/databases.scm (python-lmdb): Update to 0.95. Tobias Geerinckx-Rice
2019-06-22gnu: cbatticon: Update to 1.6.9....* gnu/packages/admin.scm (cbatticon): Update to 1.6.9. Tobias Geerinckx-Rice
2019-06-21gnu: gpgme: Update to 1.13.1....* gnu/packages/gnupg.scm (gpgme): Update to 1.13.1. Tobias Geerinckx-Rice
2019-06-21gnu: gnuplot: Update to 5.2.7....* gnu/packages/maths.scm (gnuplot): Update to 5.2.7. Tobias Geerinckx-Rice
2019-06-21gnu: rclone: Update to 1.48.0....* gnu/packages/sync.scm (rclone): Update to 1.48.0. Tobias Geerinckx-Rice
2019-06-21gnu: Move ratpoints into "sagemath.scm"...* gnu/packages/algebra.scm (ratpoints): Move package from here... * gnu/packages/sagemath.scm (ratpoints): ... to here. Nicolas Goaziou
2019-06-21gnu: Add openjdk12....* gnu/packages/java.scm(openjdk12): New variable. Gábor Boskovits
2019-06-21gnu: emacs-fish-completion: Update to 1.1....* gnu/packages/emacs-xyz.scm (emacs-fish-completion): Update to 1.1. Pierre Neidhardt
2019-06-21gnu: zn-poly: Install all libraries....* gnu/packages/sagemath.scm (zn-poly): Install the static and the dynamic library with its symlinks, and end a phase with #t. Andreas Enge
2019-06-21gnu: khmer: Update to 3.0.0a3....* gnu/packages/bioinformatics.scm (khmer): Update to 3.0.0a3. [source]: Remove patch; remove seqan in snippet. [inputs]: Add seqan-1. * gnu/packages/patches/khmer-use-libraries.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it. Ricardo Wurmus
2019-06-21gnu: icecat: Update to 60.7.2-guix1 [security fixes]....Includes fixes for CVE-2019-11707 and CVE-2019-11708. * gnu/packages/gnuzilla.scm (%icecat-version): Update to 60.7.2-guix1. (icecat-source)[upstream-firefox-source]: Update hash. Mark H Weaver
2019-06-21gnu: ungoogled-chromium: Increase build timeout....* gnu/packages/chromium.scm (ungoogled-chromium)[properties]: New field. Marius Bakke
2019-06-21gnu: linux-libre: Update to 5.1.12....* gnu/packages/linux.scm (%linux-libre-version): Update to 5.1.12. (%linux-libre-hash): Update hash. Mark H Weaver
2019-06-21gnu: linux-libre@4.19: Update to 4.19.53....* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.53. (%linux-libre-4.19-hash): Update hash. Mark H Weaver
2019-06-21gnu: linux-libre@4.14: Update to 4.14.128....* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.128. (%linux-libre-4.14-hash): Update hash. Mark H Weaver
2019-06-21gnu: ratpoints: Generate position-independent code....* gnu/packages/algebra.scm (ratpoints): Add "CCFLAGS=-fPIC" to make flags. Andreas Enge
2019-06-21gnu: symmetrica: Generate position-independent code....* gnu/packages/algebra.scm (symmetrica): Add -fPIC compiler flag. Andreas Enge
2019-06-21gnu: iml: Enable shared library....* gnu/packages/algebra.scm (iml): Add configure flag --enable-shared. Andreas Enge
2019-06-21gnu: Add lcalc....* gnu/packages/sagemath.scm (lcalc): New variable. * gnu/packages/patches/lcalc-default-parameters-1.patch, gnu/packages/patches/lcalc-default-parameters-2.patch, gnu/packages/patches/lcalc-lcommon-h.patch, gnu/packages/patches/lcalc-using-namespace-std.patch: New files. * gnu/local.mk (dist_patch_DATA): Register patches. Andreas Enge
2019-06-21gnu: lrcalc: Add a patch for identifying include files....* gnu/packages/patches/lrcalc-includes.patch: New file. * gnu/packages/algebra.scm (lrcalc): Use patch. * gnu/local.mk (dist_patch_DATA): Register patch. Andreas Enge
2019-06-21gnu: python-mpi4py: Update to 3.0.2....* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Paul Garlick
2019-06-20gnu: ungoogled-chromium: Disable parallel build....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Set #:parallel-build? #f. Adjust 'build' phase to account for it. Marius Bakke
2019-06-20gnu: samba: Update to 4.10.5 [fixes CVE-2019-12435, CVE-2019-12436]....* gnu/packages/samba.scm (samba): Update to 4.10.5. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Update to 75.0.3770.100-0.5d8abc3....* gnu/packages/chromium.scm (%chromium-version): Set to 75.0.3770.100. (%chromium-origin): Update hash. Marius Bakke
2019-06-20gnu: openh264: Update to 2.0.0....* gnu/packages/video.scm (openh264): Update to 2.0.0. [source](uri): Adjust file name. Marius Bakke
2019-06-20gnu: ungoogled-chromium: Install icons....* gnu/packages/chromium.scm (ungoogled-chromium)[arguments]: Install icons. Signed-off-by: Marius Bakke <mbakke@fastmail.com> Alex Griffin
2019-06-20gnu: Use HTTPS for sphinx-doc.org....* gnu/packages/sphinx.scm (python-sphinx, python-sphinxcontrib-websupport)[home-page]: Use HTTPS. Marius Bakke
2019-06-20gnu: python-unidecode: Update to 1.1.0....* gnu/packages/python-xyz.scm (python-unidecode): Update to 1.1.0. Marius Bakke
2019-06-20gnu: dbus: Fix CVE-2019-12749....* gnu/packages/patches/dbus-CVE-2019-12749.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/glib.scm (dbus)[replacement]: New field. (dbus/fixed): New variable. Marius Bakke
2019-06-20gnu: pigx-rnaseq: Update to 0.0.7....* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.7. [inputs]: Add coreutils and sed. Ricardo Wurmus
2019-06-20licenses: Add Historical Permission Notice and Disclaimer license...* gnu/licenses.scm (hpnd): New variable. Giovanni Biscuolo
2019-06-20gnu: Add iml....* gnu/packages/algebra.scm (iml): New variable. Andreas Enge
2019-06-20gnu: Add ppl....* gnu/packages/maths.scm (ppl): New variable. Andreas Enge
2019-06-20services: opensmtpd: Extend the PAM service....* gnu/services/mail.scm (%opensmtpd-pam-services): New variable. (opensmtpd-service-type)[extensions]: Add it, extending PAM-ROOT-SERVICE-TYPE. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr> Kristofer Buffington
2019-06-20gnu: ngs-sdk: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: sra-tools: Update to 2.9.6....* gnu/packages/bioinformatics.scm (sra-tools): Update to 2.9.6. Ricardo Wurmus
2019-06-20gnu: ncbi-vdb: Update to 2.9.6....* gnu/packages/bioinformatics.scm (ncbi-vdb): Update to 2.9.6. [arguments]: Pass HAVE_HDF5 make flag; add build phase "patch-krypto-flags". Ricardo Wurmus
2019-06-20import: hackage: Add two expected failing test cases....This adds failing test cases for two hackage import bugs: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=25138 https://debbugs.gnu.org/cgi/bugreport.cgi?bug=35743 * tests/hackage.scm: Make comment style consistent. Add two cabal parsing tests, marked as expected failures. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20utils: canonical-newline-port: Fix handling of carriage return at buffer end....Prior to this change the added test fails for me locally at byte 1024. It might depend on some default buffer sizes. Fixes <https://bugs.gnu.org/35863>. * tests/utils.scm ("canonical-newline-port-1024"): Add test. * guix/utils.scm (canonical-newline-port): Correct comments on CR/LF. Remove CR even when they're at the end of the buffer. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Robert Vollmert
2019-06-20gnu: guile: Add 2.2.5....* gnu/packages/guile.scm (guile-2.2.5): New variable. Ludovic Courtès
2019-06-20gnu: python-jupyter-console: Update to 6.0.0....* gnu/packages/python-xyz.scm (python-jupyter-console): Update to 6.0.0. [arguments]: Enable tests. [propagated-inputs]: Replace python-prompt-toolkit-1 with python-prompt-toolkit. Ricardo Wurmus
2019-06-20gnu: python2-jupyter-console: Split from python-jupyter-console....* gnu/packages/python-xyz.scm (python2-jupyter-console): Implement without package-with-python2. Ricardo Wurmus
2019-06-20Revert "gnu: Add libgd."...This reverts commit 059e4c9a15b52f7e4b262e3317eac238bf53103d. Nicolas Goaziou
2019-06-20gnu: Add lrcalc....* gnu/packages/algebra.scm (lrcalc): New variable. Andreas Enge
2019-06-20gnu: Add eclib....* gnu/packages/algebra.scm (eclib): New variable. Andreas Enge
2019-06-20gnu: Add m4rie....* gnu/packages/algebra.scm (m4rie): New variable. Andreas Enge
2019-06-20gnu: weechat: update to 2.5...* gnu/packages/irc.scm (weechat): update to 2.5 Signed-off-by: Gábor Boskovits <boskovits@gmail.com> Josh Holland
2019-06-20gnu: Add python-fpylll....* gnu/packages/algebra.scm (python-fpylll): New variable. Nicolas Goaziou
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