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2015-07-08gnu: Add preseq.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (preseq): New variable. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: New file. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: New file. * gnu-system.am (dist_patch_DATA): Add them.
2015-07-08gnu: samtools: Install headers.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase "install-headers" to install header files.
2015-07-08tests: Use the right identifier in tests/elpa.scm.Ludovic Courtès
* tests/elpa.scm: Change 'nil->empty' to 'ensure-list' in the whole file.
2015-07-08doc: Remove extra quotes around URLs.Ludovic Courtès
* doc/guix.texi (Invoking guix import): Remove extraneous quotes around URLs.
2015-07-08import: cabal: Make token recognition case-insensitive.Federico Beffa
* guix/import/cabal.scm (make-rx-matcher): Add optional parameter FLAG. (is-property, is-flag, is-src-repo, is-exec, is-test-suite, is-benchmark, is-lib, is-else, is-if): Make test case-insensitive.
2015-07-08gnu: Add emacs-mmm-mode.Federico Beffa
* gnu/packages/emacs.scm (emacs-mmm-mode): New variable.
2015-07-08gnu: Add emacs-auctex.Federico Beffa
* gnu/packages/emacs.scm: New variable.
2015-07-08build: Add 'emacs-build-system'.Federico Beffa
* Makefile.am (MODULES): Add 'guix/build-system/emacs.scm' and 'guix/build/emacs-build-system.scm'. * guix/build-system/emacs.scm: New file. * guix/build/emacs-build-system.scm: New file. * doc/guix.texi (Build Systems): Document it.
2015-07-08build: emacs-utils: Add 'emacs-byte-compile-directory'.Federico Beffa
* guix/build/emacs-utils.scm (emacs-byte-compile-directory): New procedure.
2015-07-08import: Add 'elpa' importer.Federico Beffa
* guix/import/elpa.scm: New file. * guix/scripts/import.scm: Add "elpa" to 'importers'. * guix/scripts/import/elpa.scm: New file. * Makefile.am (MODULES): Add 'guix/import/elpa.scm' and 'guix/scripts/import/elpa.scm'. (SCM_TESTS): Add 'tests/elpa.scm'. * doc/guix.texi (Invoking guix import): Document it. * tests/elpa.scm: New file. * po/guix/POTFILES.in: Add 'guix/scripts/import/elpa.scm'.
2015-07-07gnu: system: Move file-system->spec to (gnu system file-systems).David Thompson
* gnu/system/linux-initrd.scm (file-system->spec): Move this... * gnu/system/file-systems.scm: ... to here.
2015-07-07gnu: system: Move <file-system-mapping> into (gnu system file-systems).David Thompson
* gnu/system/vm.scm (<file-system-mapping>, %store-mapping): Move from here... * gnu/system/file-systems.scm: ...to here. * guix/scripts/system.scm: Import (gnu system file-systems).
2015-07-07build: syscalls: Add pivot-root.David Thompson
* guix/build/syscalls.scm (pivot-root): New procedure. * tests/syscalls.scm ("pivot-root"): New test.
2015-07-07build: syscalls: Add setns.David Thompson
* guix/build/syscalls.scm (setns): New procedure. * tests/syscalls.scm ("setns"): New test. squash: setns
2015-07-07build: syscalls: Add clone.David Thompson
* guix/build/syscalls.scm (clone): New procedure. (CLONE_NEWNS, CLONE_NEWUTS, CLONE_NEWIPC, CLONE_NEWUSER, CLONE_NEWPID, CLONE_NEWNET): New variables. * tests/syscalls.scm ("clone"): New test.
2015-07-08gnu: python-testtools: make python-mimeparse a propagated inputCyril Roelandt
* gnu/packages/python.scm (python-testtools): move python-mimeparse from inputs to propagated-inputs.
2015-07-07utils: Add call-with-temporary-directory.David Thompson
* guix/utils.scm (call-with-temporary-directory): New procedure.
2015-07-07build: syscalls: Add mkdtemp!David Thompson
* guix/build/syscalls.scm (mkdtemp!): New procedure. * tests/syscalls.scm ("mkdtemp!"): New test.
2015-07-07build: syscalls: Add unmount flags.David Thompson
* guix/build/syscalls.scm (MNT_FORCE, MNT_DETACH, MNT_EXPIRE) (UMOUNT_NOFOLLOW): New variables.
2015-07-07build: syscalls: Add additional mount flags.David Thompson
* guix/build/syscalls.scm (MS_NOSUID, MS_NODEV, MS_NOEXEC, MS_STRICTATIME): New variables.
2015-07-08tests: Test the exit code of 'guix environment'.Ludovic Courtès
This is a followup to d2cef62. * tests/guix-environment.sh: Add test for the exit code.
2015-07-08store: 'run-with-store' initializes %CURRENT-TARGET-SYSTEM to #f.Ludovic Courtès
* guix/store.scm (run-with-store): Set %CURRENT-TARGET-SYSTEM to #f. * tests/gexp.scm ("gexp->derivation vs. %current-target-system"): New test.
2015-07-07gnu: cups-filters: Update to 1.0.71.Mark H Weaver
* gnu/packages/cups.scm (cups-filters): Update to 1.0.71.
2015-07-07gnu: zathura-{cb,ps,djvu,pdf-poppler}: Fix installation of desktop files.Mark H Weaver
Based on a patch by Alex Kost <alezost@gmail.com>. * gnu/packages/pdf.scm (zathura-cb, zathura-ps, zathura-djvu) (zathura-pdf-poppler)[arguments]: In make-flags, set PREFIX instead of DESTDIR and adjust PLUGINDIR accordingly.
2015-07-07gnu: libdvdnav: Update to 5.0.3.Mark H Weaver
* gnu/packages/video.scm (libdvdnav): Update to 5.0.3.
2015-07-07gnu: libdvdread: Update to 5.0.3.Mark H Weaver
* gnu/packages/video.scm (libdvdread): Update to 5.0.3.
2015-07-07system: Fix typo.Alex Kost
* gnu/system.scm (etc-directory): Fix typo in a comment.
2015-07-07Prevent Git from silently ignoring new files.Mathieu Lirzin
* .gitignore: Ignore only specific files instead of the whole 'build-aux' directory.
2015-07-07gnu: Add libmpeg2.Mark H Weaver
* gnu/packages/video.scm (libmpeg2): New variable.
2015-07-07gnu: liba52: Build shared library.Mark H Weaver
* gnu/packages/patches/liba52-enable-pic.patch, gnu/packages/patches/liba52-link-with-libm.patch, gnu/packages/patches/liba52-set-soname.patch, gnu/packages/patches/liba52-use-mtune-not-mcpu.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/video.scm (liba52)[source]: Add patches. [native-inputs]: Add autoconf, automake, and libtool. [arguments]: Add "--enable-shared" to configure-flags. Add 'bootstrap' phase.
2015-07-07gnu: ruby: Remove custom 'rake gem' build phase from all gems.David Thompson
* gnu/packages/ruby.scm (ruby-hoe, ruby-rake-compiler, ruby-net-http-persistent, ruby-minitest, ruby-minitest-sprint, ruby-minitest-bacon): Remove custom 'rake gem' build phase that is now handled automatically by the Ruby build system.
2015-07-07build: ruby: Run 'rake gem' when gemspec is missing.pjotrp
* guix/build/ruby-build-system.scm (build): Run 'rake gem' when there is no gemspec in the source tree. Co-Authored-By: David Thompson <davet@gnu.org>
2015-07-07gnu: samtools: Update to 1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): Update to 1.2.
2015-07-07gnu: pari-gp: Update to 2.7.4.Andreas Enge
* gnu/packages/algebra.scm (pari-gp): Update to 2.7.4.
2015-07-07gnu: icecat: Apply more libvpx-1.4 fixes.Mark H Weaver
This is a followup to commit c803ffcb3a9d5669bf5bae62b66fa058d697545c. * gnu/packages/patches/icecat-libvpx-1.4.patch: Augment existing patch to include fixes for content/media/encoder/VP8TrackEncoder.cpp.
2015-07-06gnu: icecat: Fix build against libvpx 1.4.Mark H Weaver
* gnu/packages/patches/icecat-libvpx-1.4.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patch.
2015-07-06gnu: gst-plugins-good: Disable rtprtx tests that frequently fail.Mark H Weaver
* gnu/packages/gstreamer.scm (arguments): Add 'disable-failing-rtprtx-tests' phase.
2015-07-06gnu: libvpx: Update to 1.4.0.Mark H Weaver
* gnu/packages/patches/libvpx-fix-armhf-link.patch, gnu/packages/patches/libvpx-fix-ssse3-quantize.patch, gnu/packages/patches/libvpx-vp9-out-of-bounds-access.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove them. * gnu/packages/video.scm (libvpx): Update to 1.4.0. Remove patches. Update source URI.
2015-07-06gnu: libwmf: Fix CVE-2006-3376, CVE-2009-1364, CVE-2015-{0848,4588,4695,4696}.Mark H Weaver
* gnu/packages/patches/libwmf-CVE-2006-3376.patch, gnu/packages/patches/libwmf-CVE-2009-1364.patch, gnu/packages/patches/libwmf-CVE-2015-0848+4588+4695+4696.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/image.scm (libwmf)[source]: Add patches.
2015-07-07substitute: Avoid infinite loop when updating the substitute list.Andy Patterson
Reported at <http://lists.gnu.org/archive/html/guix-devel/2015-07/msg00119.html>. * guix/scripts/substitute.scm (http-multiple-get): When RESP has "Connection: close", consume HEAD anyway; always call PROC to read from BODY. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2015-07-07daemon: Flush upon '\r' when reading the substituter's stderr.Ludovic Courtès
This commit had been inadvertently reverted in 322eeb8. * nix/libstore/local-store.cc (LocalStore::getLineFromSubstituter): Flush when the line contains '\r'.
2015-07-06build: Generate 'AUTHORS'.Alex Kost
* build-aux/generate-authors.scm: New file. * Makefile.am (gen-AUTHORS): New target. (dist-hook, .PHONY): Add it.
2015-07-06gnu: libreoffice: Update to 4.4.4.3.Andreas Enge
* gnu/packages/libreoffice.scm (libreoffice): Update to 4.4.4.3.
2015-07-06gnu: freeipmi: Update to 1.4.9.Ludovic Courtès
* gnu/packages/freeipmi.scm (freeipmi): Update to 1.4.9.
2015-07-06gnu: gcal: Update to 4.Ludovic Courtès
* gnu/packages/gcal.scm (gcal): Update to 4.
2015-07-06gnu: gxmessage: Update to 3.4.3.Ludovic Courtès
* gnu/packages/gxmessage.scm (gxmessage): Update to 3.4.3. [inputs]: Use GTK+ instead of GTK+-2.
2015-07-06gnu: guile-sdl: Update to 0.5.2.Ludovic Courtès
* gnu/packages/sdl.scm (guile-sdl): Update to 0.5.2. [arguments]: Augment 'fix-env-and-path' phase to modify 'test/Makefile.in'.
2015-07-05gnu: powertabeditor: Update to 2.0.0-alpha8.Ricardo Wurmus
* gnu/packages/music.scm (powertabeditor): Update to 2.0.0-alpha8.
2015-07-05gnu: powertabeditor: Enable tests.Ricardo Wurmus
* gnu/packages/music.scm (powertabeditor)[arguments]: Run "pte_tests" in "check" phase; add phase "fix-tests".
2015-07-05download: Reference tls instead of renamed gnutls module.Andreas Enge
* guix/download.scm (gnutls-package): Use new module name tls instead of gnutls.
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