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2023-04-29gnu: r-alpsnmr: Update to 4.2.0....* gnu/packages/bioconductor.scm (r-alpsnmr): Update to 4.2.0. Ricardo Wurmus
2023-04-29gnu: r-alpine: Update to 1.25.0....* gnu/packages/bioconductor.scm (r-alpine): Update to 1.25.0. Ricardo Wurmus
2023-04-29gnu: r-alphabeta: Update to 1.14.0....* gnu/packages/bioconductor.scm (r-alphabeta): Update to 1.14.0. Ricardo Wurmus
2023-04-29gnu: r-alevinqc: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-alevinqc): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-aldex2: Update to 1.32.0....* gnu/packages/bioconductor.scm (r-aldex2): Update to 1.32.0. Ricardo Wurmus
2023-04-29gnu: r-anvil: Update to 1.12.0....* gnu/packages/bioconductor.scm (r-anvil): Update to 1.12.0. Ricardo Wurmus
2023-04-29gnu: r-annotationhubdata: Update to 1.30.0....* gnu/packages/bioconductor.scm (r-annotationhubdata): Update to 1.30.0. Ricardo Wurmus
2023-04-29gnu: r-animalcules: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-animalcules): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-ancombc: Update to 2.2.0....* gnu/packages/bioconductor.scm (r-ancombc): Update to 2.2.0. Ricardo Wurmus
2023-04-29gnu: r-anaquin: Update to 2.24.0....* gnu/packages/bioconductor.scm (r-anaquin): Update to 2.24.0. Ricardo Wurmus
2023-04-29gnu: r-amaretto: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-amaretto): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-amplican: Update to 1.21.0....* gnu/packages/bioconductor.scm (r-amplican): Update to 1.21.0. Ricardo Wurmus
2023-04-29gnu: r-amountain: Update to 1.26.0....* gnu/packages/bioconductor.scm (r-amountain): Update to 1.26.0. Ricardo Wurmus
2023-04-29gnu: r-airpart: Update to 1.8.0....* gnu/packages/bioconductor.scm (r-airpart): Update to 1.8.0. Ricardo Wurmus
2023-04-29gnu: r-aims: Update to 1.32.0....* gnu/packages/bioconductor.scm (r-aims): Update to 1.32.0. Ricardo Wurmus
2023-04-29gnu: r-agimicrorna: Update to 2.50.0....* gnu/packages/bioconductor.scm (r-agimicrorna): Update to 2.50.0. Ricardo Wurmus
2023-04-29gnu: r-adductomicsr: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-adductomicsr): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-agilp: Update to 3.32.0....* gnu/packages/bioconductor.scm (r-agilp): Update to 3.32.0. Ricardo Wurmus
2023-04-29gnu: r-aggregatebiovar: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-aggregatebiovar): Update to 1.10.0. Ricardo Wurmus
2023-04-29gnu: r-agdex: Update to 1.48.0....* gnu/packages/bioconductor.scm (r-agdex): Update to 1.48.0. Ricardo Wurmus
2023-04-29gnu: r-affyrnadegradation: Update to 1.46.0....* gnu/packages/bioconductor.scm (r-affyrnadegradation): Update to 1.46.0. Ricardo Wurmus
2023-04-29gnu: r-affyplm: Update to 1.76.0....* gnu/packages/bioconductor.scm (r-affyplm): Update to 1.76.0. Ricardo Wurmus
2023-04-29gnu: r-affylmgui: Update to 1.74.0....* gnu/packages/bioconductor.scm (r-affylmgui): Update to 1.74.0. Ricardo Wurmus
2023-04-29gnu: r-affyilm: Update to 1.52.0....* gnu/packages/bioconductor.scm (r-affyilm): Update to 1.52.0. Ricardo Wurmus
2023-04-29gnu: r-affixcan: Update to 1.18.0....* gnu/packages/bioconductor.scm (r-affixcan): Update to 1.18.0. Ricardo Wurmus
2023-04-29gnu: r-adsplit: Update to 1.70.0....* gnu/packages/bioconductor.scm (r-adsplit): Update to 1.70.0. Ricardo Wurmus
2023-04-29gnu: r-adimpute: Update to 1.10.0....* gnu/packages/bioconductor.scm (r-adimpute): Update to 1.10.0. Ricardo Wurmus
2023-04-29gnu: r-adamgui: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-adamgui): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-adam: Update to 1.16.0....* gnu/packages/bioconductor.scm (r-adam): Update to 1.16.0. Ricardo Wurmus
2023-04-29gnu: r-adacgh2: Update to 2.40.0....* gnu/packages/bioconductor.scm (r-adacgh2): Update to 2.40.0. Ricardo Wurmus
2023-04-29gnu: r-absseq: Update to 1.54.0....* gnu/packages/bioconductor.scm (r-absseq): Update to 1.54.0. Ricardo Wurmus
2023-04-29gnu: r-abarray: Update to 1.68.0....* gnu/packages/bioconductor.scm (r-abarray): Update to 1.68.0. Ricardo Wurmus
2023-04-29gnu: r-missmethyl: Update to 1.34.0....* gnu/packages/bioconductor.scm (r-missmethyl): Update to 1.34.0. Ricardo Wurmus
2023-04-29gnu: r-shiny: Update to 1.7.4....* gnu/packages/cran.scm (r-shiny): Update to 1.7.4. Ricardo Wurmus
2023-04-29gnu: r-glimma: Update to 2.10.0....* gnu/packages/bioconductor.scm (r-glimma): Update to 2.10.0. [source]: Delete minified JavaScript files. [arguments]: Add 'process-javascript phase. [native-inputs]: Add esbuild. Ricardo Wurmus
2023-04-29gnu: r-reportingtools: Update to 2.39.0....* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.39.0. [source]: Delete minified JavaScript files. [arguments]: Add 'process-javascript phase. [native-inputs]: Add source code for jquery 1.8.0. Ricardo Wurmus
2023-04-29gnu: Add r-densvis....* gnu/packages/bioconductor.scm (r-densvis): New variable. Ricardo Wurmus
2023-04-29import/cran: Translate from xml2 to libxml2....* guix/import/cran.scm (transform-sysname): Add translation from xml2 to libxml2. Ricardo Wurmus
2023-04-29import/cran: Add "unix" to list of invalid packages....* guix/import/cran.scm (invalid-packages): Add "unix". Ricardo Wurmus
2023-04-29gnu: r-with-tests: Update to 4.3.0....* gnu/packages/statistics.scm (r-with-tests): Update to 4.3.0. [arguments]: Move 'set-timezone before 'configure. Ricardo Wurmus
2023-04-29guix: Upgrade to Bioconductor 3.16....* guix/build-system/r.scm (bioconductor-uri): Bump Bioconductor version to 3.17. * guix/import/cran.scm (%bioconductor-version): Same. Ricardo Wurmus
2023-04-29import/pypi: Generate packages using pyproject-build-system....* guix/import/pypi.scm (make-pypi-sexp): Generate PACKAGE expression where the value for the BUILD-SYSTEM field is PYPROJECT-BUILD-SYSTEM instead of PYTHON-BUILD-SYSTEM. Ricardo Wurmus
2023-04-29gnu: libpotassco: Unbundle catch....This patch incidentally fixes a build failure caused by the bundled catch. * gnu/packages/potassco.scm (libpotassco)[source]: Unbundle catch. [native-inputs]: Add catch2-1. Liliana Marie Prikler
2023-04-28gnu: libexpected: Update to 1.1.0....* gnu/packages/patches/libexpected-use-provided-catch2.patch: Add new patch. * gnu/packages/patches/libexpected-nofetch.patch: Remove unused patch. * gnu/local.mk (dist_patch_DATA): Register changes. * gnu/packages/cpp.scm (libexpected): Update to 1.1.0, and use new patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret
2023-04-28gnu: fwupd: Update to 1.8.14....* gnu/packages/firmware.scm (fwupd): Update to 1.8.14. Also, change two files' timestamp because they are zipped up by Python. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Josselin Poiret
2023-04-28gnu: maven-embedder: Fix build....* gnu/packages/maven (maven-embedder)[arguments]: Add the'add-sisu-shebang phase after unpack. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aleksandr Vityazev
2023-04-28gnu: maven-core-bootstrap: Fix build....* gnu/packages/maven (maven-core-bootstrap)[arguments]: Add the'add-sisu-shebang phase after unpack. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aleksandr Vityazev
2023-04-28gnu: maven-resolver-provider: Fix build....* gnu/packages/maven (maven-resolver-provider)[arguments]: Add the'add-sisu-shebang phase after unpack. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aleksandr Vityazev
2023-04-28gnu: maven-model-builder: Fix build....* gnu/packages/maven (maven-model-builder)[arguments]: Add the'add-sisu-shebang phase after unpack. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aleksandr Vityazev
2023-04-28gnu: maven-settings-builder: Fix build....* gnu/packages/maven (maven-settings-builder)[arguments]: Add the'add-sisu-shebang phase after unpack. Signed-off-by: Ludovic Courtès <ludo@gnu.org> Aleksandr Vityazev
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