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2020-01-27gnu: r-knitr: Update to 1.27....* gnu/packages/statistics.scm (r-knitr): Update to 1.27. Ricardo Wurmus
2020-01-27gnu: r-foreign: Update to 0.8-75....* gnu/packages/statistics.scm (r-foreign): Update to 0.8-75. Ricardo Wurmus
2020-01-27gnu: r-shinycssloaders: Update to 0.3....* gnu/packages/cran.scm (r-shinycssloaders): Update to 0.3. Ricardo Wurmus
2020-01-27gnu: r-idpmisc: Update to 1.1.20....* gnu/packages/cran.scm (r-idpmisc): Update to 1.1.20. Ricardo Wurmus
2020-01-27gnu: r-rngwell: Update to 0.10-6....* gnu/packages/cran.scm (r-rngwell): Update to 0.10-6. Ricardo Wurmus
2020-01-27gnu: r-bio3d: Update to 2.4-1....* gnu/packages/cran.scm (r-bio3d): Update to 2.4-1. Ricardo Wurmus
2020-01-27gnu: r-parameters: Update to 0.4.1....* gnu/packages/cran.scm (r-parameters): Update to 0.4.1. Ricardo Wurmus
2020-01-27gnu: r-leiden: Update to 0.3.2....* gnu/packages/cran.scm (r-leiden): Update to 0.3.2. Ricardo Wurmus
2020-01-27gnu: r-rhpcblasctl: Update to 0.20-17....* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-17. Ricardo Wurmus
2020-01-27gnu: r-threejs: Update to 0.3.3....* gnu/packages/cran.scm (r-threejs): Update to 0.3.3. [native-inputs]: Use jquery 1.12.4 and threejs version r111. [arguments]: Adjust. Ricardo Wurmus
2020-01-27gnu: r-farver: Update to 2.0.3....* gnu/packages/cran.scm (r-farver): Update to 2.0.3. Ricardo Wurmus
2020-01-27gnu: r-adegenet: Update to 2.1.2....* gnu/packages/cran.scm (r-adegenet): Update to 2.1.2. Ricardo Wurmus
2020-01-27gnu: r-cobs: Update to 1.3-4....* gnu/packages/cran.scm (r-cobs): Update to 1.3-4. Ricardo Wurmus
2020-01-27gnu: r-dorng: Update to 1.8.2....* gnu/packages/cran.scm (r-dorng): Update to 1.8.2. [propagated-inputs]: Remove r-pkgmaker. Ricardo Wurmus
2020-01-27gnu: r-future: Update to 1.16.0....* gnu/packages/cran.scm (r-future): Update to 1.16.0. Ricardo Wurmus
2020-01-27gnu: r-rmpfr: Update to 0.8-1....* gnu/packages/cran.scm (r-rmpfr): Update to 0.8-1. [inputs]: Add gmp. [native-inputs]: Add pkg-config. Ricardo Wurmus
2020-01-27gnu: r-gmp: Update to 0.5-13.6....* gnu/packages/cran.scm (r-gmp): Update to 0.5-13.6. Ricardo Wurmus
2020-01-27gnu: r-afex: Update to 0.26-0....* gnu/packages/cran.scm (r-afex): Update to 0.26-0. Ricardo Wurmus
2020-01-27gnu: r-gh: Update to 1.1.0....* gnu/packages/cran.scm (r-gh): Update to 1.1.0. [propagated-inputs]: Add r-cli. Ricardo Wurmus
2020-01-27gnu: r-sjplot: Update to 2.8.2....* gnu/packages/cran.scm (r-sjplot): Update to 2.8.2. [propagated-inputs]: Remove r-ggrepel, r-glmmtmb, r-lme4, r-magrittr, r-modelr, and r-psych. Ricardo Wurmus
2020-01-27gnu: r-effectsize: Update to 0.1.1....* gnu/packages/cran.scm (r-effectsize): Update to 0.1.1. Ricardo Wurmus
2020-01-27gnu: r-performance: Update to 0.4.3....* gnu/packages/cran.scm (r-performance): Update to 0.4.3. Ricardo Wurmus
2020-01-27gnu: r-bayestestr: Update to 0.5.1....* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.1. Ricardo Wurmus
2020-01-27gnu: r-sjstats: Update to 0.17.8....* gnu/packages/cran.scm (r-sjstats): Update to 0.17.8. [propagated-inputs]: Add r-effectsize. Ricardo Wurmus
2020-01-27gnu: r-survey: Update to 3.37....* gnu/packages/cran.scm (r-survey): Update to 3.37. Ricardo Wurmus
2020-01-27gnu: r-magick: Update to 2.3....* gnu/packages/cran.scm (r-magick): Update to 2.3. Ricardo Wurmus
2020-01-27gnu: r-sjlabelled: Update to 1.1.2....* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.2. [propagated-inputs]: Remove r-magrittr, r-purrr, r-rlang, and r-tidyselect. Ricardo Wurmus
2020-01-27gnu: r-factominer: Update to 2.1....* gnu/packages/cran.scm (r-factominer): Update to 2.1. Ricardo Wurmus
2020-01-27gnu: r-leaps: Update to 3.1....* gnu/packages/cran.scm (r-leaps): Update to 3.1. Ricardo Wurmus
2020-01-27gnu: r-vctrs: Update to 0.2.2....* gnu/packages/cran.scm (r-vctrs): Update to 0.2.2. [propagated-inputs]: Remove r-backports and r-zeallot. Ricardo Wurmus
2020-01-27gnu: r-tsp: Update to 1.1-8....* gnu/packages/cran.scm (r-tsp): Update to 1.1-8. Ricardo Wurmus
2020-01-27gnu: r-xts: Update to 0.12-0....* gnu/packages/cran.scm (r-xts): Update to 0.12-0. Ricardo Wurmus
2020-01-27gnu: r-broom: Update to 0.5.4....* gnu/packages/cran.scm (r-broom): Update to 0.5.4. Ricardo Wurmus
2020-01-27gnu: r-lpsolve: Update to 5.6.15....* gnu/packages/cran.scm (r-lpsolve): Update to 5.6.15. Ricardo Wurmus
2020-01-27gnu: r-prettyunits: Update to 1.1.1....* gnu/packages/cran.scm (r-prettyunits): Update to 1.1.1. Ricardo Wurmus
2020-01-27gnu: r-rgooglemaps: Update to 1.4.5.2....* gnu/packages/cran.scm (r-rgooglemaps): Update to 1.4.5.2. Ricardo Wurmus
2020-01-27gnu: r-callr: Update to 3.4.1....* gnu/packages/cran.scm (r-callr): Update to 3.4.1. Ricardo Wurmus
2020-01-27gnu: r-diversitree: Update to 0.9-13....* gnu/packages/bioinformatics.scm (r-diversitree): Update to 0.9-13. Ricardo Wurmus
2020-01-27gnu: r-metap: Update to 1.3....* gnu/packages/bioconductor.scm (r-metap): Update to 1.3. Ricardo Wurmus
2020-01-27gnu: python-testpath: Remove incorrect #:imported-modules....Fixes <https://bugs.gnu.org/39298>. Reported by Clément Lassieur <clement@lassieur.org> and Ricardo Wurmus <rekado@elephly.net>. This pacakge would import (srfi srfi-1) from the host Guile, leading to build failures when the host Guile is 3.0. * gnu/packages/check.scm (python-testpath)[arguments]: Remove incorrect #:imported-modules. Ludovic Courtès
2020-01-27gnu: emacs-org-make-toc: Update to 0.4....* gnu/packages/emacs-xyz.scm (emacs-org-make-toc): Update to 0.4 David Wilson
2020-01-27gnu: public-inbox: Enable support for background HTTP/NNTP daemons....* gnu/packages/mail.scm (public-inbox)[inputs]: Add perl-net-server. 宋文武
2020-01-27gnu: keepassxc: Update to 2.5.3....* gnu/packages/password-utils.scm (keepassxc): Update to 2.5.3. Efraim Flashner
2020-01-27gnu: s6: Install documentation....* gnu/packages/skarnet.scm (s6)[arguments]: Add 'install-doc' phase. 宋文武
2020-01-27gnu: ocaml: Switch to ocaml 4.09 by default....Bap and earley cannot be updated as they do not support 4.09 yet. Bap requires the janestreet packages, which cannot be upgraded as no version supports 4.09 and 4.07 at the same time. Moreover, newer versions of the janestreet packages have a different dependency graph, which will require a whole new set of packages. We cannot simply use package-with-ocaml4.07 on them. * gnu/packages/ocaml.scm (ocaml-sqlite3, ocaml-ppx-tools, ocaml-gen) (ocaml-sedlex, ocaml-pcre, ocaml-expect, ocaml-ezjsonm, ocaml-uri) (ocaml-piqilib, ocaml-piqi, ocaml-charinfo-width, ocaml-zed) (ocaml-lambda-term, ocaml-utop, ocaml-ppx-inline-test, ocaml-earley) (ocaml-merlin, ocaml-gsl, ocaml-gsl-1, ocaml-sexplib0, ocaml-parsexp) (ocaml-sexplib, ocaml-base, ocaml-stdio, ocaml-ppxlib, ocaml-ppx-compare) (ocaml-fieldslib, ocaml-variantslib, ocaml-ppx-fields-conv) (ocaml-ppx-sexp-conv, ocaml-ppx-variants-conv, ocaml-ppx-custom-printf) (ocaml-bin-prot, ocaml-ppx-hash, ocaml-ppx-enumerate, ocaml-ppx-bench) (ocaml-ppx-here, ocaml-ppx-typerep, ocaml-ppx-sexp-value) (ocaml-ppx-sexp-message, ocaml-ppx-pipebang, ocaml-ppx-optional) (ocaml-ppx-optcomp, ocaml-ppx-fail, ocaml-ppx-let, ocaml-ppx-assert) (ocaml-ppx-expect, ocaml-ppx-js-style, ocaml-ppx-typerep-conv) (ocaml-ppx-base, ocaml-ppx-bin-prot, ocaml-ppx-jane) (ocaml-splittable-random, ocaml-configurator, ocaml-spawn, ocaml-core) (ocaml-core-kernel, ocaml-odoc, ocaml-fftw3, ocaml-lacaml): Rename to ... (ocaml4.07-sqlite3, ocaml4.07-ppx-tools, ocaml4.07-gen, ocaml4.07-sedlex) (ocaml4.07-pcre, ocaml4.07-expect, ocaml4.07-ezjsonm, ocaml4.07-uri) (ocaml4.07-piqilib, ocaml4.07-piqi, ocaml4.07-charinfo-width) (ocaml4.07-zed, ocaml4.07-lambda-term, ocaml4.07-utop) (ocaml4.07-ppx-inline-test, ocaml4.07-earley, ocaml4.07-merlin) (ocaml4.07-gsl, ocaml4.07-gsl-1, ocaml4.07-sexplib0, ocaml4.07-parsexp) (ocaml4.07-sexplib, ocaml4.07-base, ocaml4.07-stdio, ocaml4.07-ppxlib) (ocaml4.07-ppx-compare, ocaml4.07-fieldslib, ocaml4.07-variantslib) (ocaml4.07-ppx-fields-conv, ocaml4.07-ppx-sexp-conv) (ocaml4.07-ppx-variants-conv, ocaml4.07-ppx-custom-printf) (ocaml4.07-bin-prot, ocaml4.07-ppx-hash, ocaml4.07-ppx-enumerate) (ocaml4.07-ppx-bench, ocaml4.07-ppx-here, ocaml4.07-ppx-typerep) (ocaml4.07-ppx-sexp-value, ocaml4.07-ppx-sexp-message) (ocaml4.07-ppx-pipebang, ocaml4.07-ppx-optional, ocaml4.07-ppx-optcomp) (ocaml4.07-ppx-fail, ocaml4.07-ppx-let, ocaml4.07-ppx-assert) (ocaml4.07-ppx-expect, ocaml4.07-ppx-js-style) (ocaml4.07-ppx-typerep-conv, ocaml4.07-ppx-base, ocaml4.07-ppx-bin-prot) (ocaml4.07-ppx-jane, ocaml4.07-splittable-random) (ocaml4.07-configurator, ocaml4.07-spawn, ocaml4.07-core) (ocaml4.07-core-kernel, ocaml4.07-odoc, ocaml4.07-fftw3) (ocaml4.07-lacaml): ... to this and use ocaml 4.07. (bap, unison): Use ocaml-4.07. * gnu/packages/bioinformatics.scm (pplacer): Use ocaml-4.07. Julien Lepiller
2020-01-27guix: ocaml: Also replace dune when relevant in package-with-explicit-ocaml....* guix/build-system/ocaml.scm (package-with-explicit-ocaml): Take a dune argument and add it to transformed packages when relevant. Julien Lepiller
2020-01-27gnu: Add ocaml4.07-dune....* gnu/packages/ocaml.scm (ocaml4.07-dune): New variable. Julien Lepiller
2020-01-27gnu: Add ocaml4.07-lablgtk....* gnu/packages/ocaml.scm (ocaml4.07-lablgtk): New variable. (lablgtk)[properties]: Add variant. Julien Lepiller
2020-01-27gnu: ocambuild: Update to 0.14.0....* gnu/packages/ocaml.scm (ocamlbuild): Update to 0.14.0. [build-system]: Use ocaml-build-system. Julien Lepiller
2020-01-26gnu: pcsxr: Wrap with GSETTINGS_SCHEMA_DIR path variable....Without setting this path variable, gtk+ must be installed in the user's profile for pcsxr's GUI to work. * gnu/packages/emulators.scm (pcsxr)[arguments]: Add 'wrap-program' phase and return #t from 'cd-subdir' and 'fix-cdio-lookup' phases. Kei Kebreau