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2023-04-25gnu: perl-crypt-openssl-rsa: Update to 0.33.Efraim Flashner
* gnu/packages/tls.scm (perl-crypt-openssl-rsa): Update to 0.33.
2023-04-25gnu: bedtools-2.18: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bedtools-2.18)[arguments]: Fix operators in 'compatibility phase.
2023-04-25gnu: hisat: Build with GCC 10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (hisat)[native-inputs]: Add gcc-10.
2023-04-25gnu: kallisto: Update to 0.48.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (kallisto): Update to 0.48.0. [arguments]: Remove trailing #T from build phase.
2023-04-25gnu: bpp-core: Build with GCC 10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bpp-core)[native-inputs]: Add gcc-10.
2023-04-25gnu: vcflib: Update to 1.0.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vcflib): Update to 1.0.9. [source]: Update snippet. [inputs]: Add curl, pybind11, and wfa2-lib. [arguments]: Adjust and reformat.
2023-04-25gnu: tabixpp: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.2. [source]: Simplify snippet. [inputs]: Add curl. [arguments]: Simplify and reformat.
2023-04-25gnu: Add wfa2-lib.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (wfa2-lib): New variable.
2023-04-25gnu: biber: Fix build with new Perl.Josselin Poiret
* gnu/packages/patches/biber-adapt-perl-5.36.patch: Backport patch from upstream's 760e6e4ec08a3097f7e6136331541a7b8c1c9df7. * gnu/packages/tex.scm (biber): Use it. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: Andreas Enge <andreas@enge.fr>
2023-04-25gnu: gcc: Do not build gcov on MinGW.Vivien Kraus
* gnu/packages/gcc.scm (gcc-configure-flags-for-triplet): Disable gcov when targetting mingw. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25gnu: nerd-dictation: Add package variants.Nicolas Graves
* gnu/packages/machine-learning.scm (nerd-dictation)[inputs]: Remove. (nerd-dictation-gexp): New procedure. (nerd-dictation/xdotool, nerd-dictation/sox-xdotool) (nerd-dictation/sox-ydotool, nerd-dictation/sox-wtype): New variables Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25services: tor: Deprecate 'tor-hidden-service' procedure.Bruno Victal
Due to (now renamed) 'hidden-service' record type not being exported, the only way Onion services (formely hidden services) could have worked is through the now deprecated 'tor-hidden-service' procedure. This commit updates the Tor service documentation, corrects some inconsistently named accessors in <tor-configuration> record-type, renames and refactors tor-hidden-service-configuration to tor-onion-service-configuration using define-configuration and also exports it, allowing Onion services to be configured directly within a <tor-configuration> record. Lastly, it also deprecates the 'tor-hidden-service' procedure. * doc/guix.texi (Networking Services): Substitute mentions of “Hidden services” with “Onion Services”. Add a Tor Onion service configuration example. Document <tor-onion-service-configuration>. Remove mention of 'tor-hidden-service' procedure. * gnu/services/networking.scm: Export tor-configuration-tor, tor-configuration-config-file, tor-configuration-hidden-services, tor-configuration-socks-socket-type, tor-configuration-control-socket-path, tor-onion-service-configuration, tor-onion-service-configuration?, tor-onion-service-configuration-name, tor-onion-service-configuration-mapping. (<tor-configuration>)[control-socket?]: Rename accessor. (<hidden-service>): Replace with … (<tor-onion-service-configuration>): … this. (tor-configuration->torrc): Update record-type name. (tor-activation): Ditto. (tor-hidden-service-type): Remove variable. (tor-hidden-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-25gnu: ghc-8.10: Avoid testsuite timeouts on i686.Lars-Dominik Braun
* gnu/packages/haskell.scm (ghc-8.10)[arguments]: Add new phase 'skip-failing-tests-i686-cuirass.
2023-04-25gnu: lofreq: Set file timestamps to 1980s.Ricardo Wurmus
This keeps Python from complaining: "ZIP does not support timestamps before 1980". * gnu/packages/bioinformatics.scm (lofreq)[arguments]: Add build phase 'set-source-file-times-to-1980.
2023-04-25gnu: lofreq: Drop input labels.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (lofreq)[inputs]: Drop package labels.
2023-04-25gnu: ivar: Update to 1.4.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (ivar): Update to 1.4.2. [arguments]: Remove -Werror flag.
2023-04-25gnu: propeller-gcc-4: Use MODIFY-INPUTS.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-gcc-4)[native-inputs]: Use MODIFY-INPUTS and drop package label.
2023-04-25gnu: propeller-gcc-4: Use G-expression.Ricardo Wurmus
* gnu/packages/embedded.scm (propeller-gcc-4)[arguments]: Use G-expression because the parent GCC package uses them too.
2023-04-25gnu: trurl: Correct inputs.Andreas Enge
* gnu/packages/curl.scm (trurl): Replace non-existant input curl-7.84.0 by curl, which is version 7.85.0.
2023-04-25Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-25gnu: python-asyncssh: Update to 2.13.1.Lars-Dominik Braun
Includes fix for python-cryptography>=39 disallowing SHA-1 signatures, which caused the testsuite to fail. * gnu/packages/ssh.scm (python-asyncssh): Update to 2.13.1.
2023-04-25gnu: alacritty: Patch reference to xdg-open.Efraim Flashner
* gnu/packages/terminals.scm (alacritty)[arguments]: Add a phase to add an absolute reference to xdg-open. [inputs]: Add xdg-utils.
2023-04-25gnu: emacs-eshell-syntax-highlighting: Update to 0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-eshell-syntax-highlighting): Update to 0.5.
2023-04-25gnu: nethack: Update to 3.6.7.Nicolas Goaziou
* gnu/packages/games.scm (nethack): Update to 3.6.7.
2023-04-25gnu: Add trurl.Sharlatan Hellseher
* gnu/packages/curl.scm (trurl): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: emacs-auctex: Update to 13.2.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-auctex): Update to 13.2.0.
2023-04-25gnu: Add emacs-xonsh-mode.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-xonsh-mode): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: python-importlib-resources: Update to 5.12.0.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-importlib-resources): Update to 5.12.0. [build-system]: Use pyproject-build-system. [arguments]: Add phase to avoid "pip install". [native-inputs]: Remove python-toml; add python-flake8, python-pytest, python-pytest-black, python-pytest-checkdocs, python-pytest-cov, python-pytest-enabler, python-pytest-flake8, python-pytest-mypy, and python-setuptools-57. [propagated-inputs]: Add python-zipp.
2023-04-25gnu: guix-build-coordinator: Update to 0-79.6a4e827.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-79.6a4e827.
2023-04-25gnu: schismtracker: Update to 20221201.Antero Mejr
* gnu/packages/music.scm (schismtracker): Update to 20221201. [source]: Convert snippet to gexp. [arguments]: Convert to gexp, add configure flags for FLAC and Wayland support. [inputs]: Remove libx11, libxext, and sdl; add flac and sdl2. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-04-25gnu: python-anyio: Upgrade to 3.6.2.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-anyio): Upgrade to 3.6.2.
2023-04-25Revert "gnu: python-pytest-trio: Update to 0.8.0."Lars-Dominik Braun
Not compatible with python-trio 0.8. This reverts commit 27a4bfbd07022ebabc352a419c7588fcfc881d88.
2023-04-25gnu: python-trio: Downgrade to 0.21.Lars-Dominik Braun
Version 0.22 deprecates MultiError, which trips up testsuites of dependents. python-anyio for instance is explicitly not compatible with >= 0.22, so stick to an older release. * gnu/packages/python-xyz.scm (python-trio): Downgrade to 0.21. [arguments]: Disable failing test.
2023-04-25gnu: sbcl-serapeum: Update to 20230423.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-serapeum): Update to 20230423.
2023-04-25gnu: sbcl-njson: Update to 1.0.0.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-njson): Update to 1.0.0.
2023-04-25gnu: slimevolley: Build with gcc-7.Efraim Flashner
* gnu/packages/games.scm (slimevolley)[native-inputs]: Add gcc-7.
2023-04-25gnu: scribus: Fix build with latest poppler.Ricardo Wurmus
* gnu/packages/patches/scribus-1.5.8-poppler-22.03.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.04.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.09.0.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-1.patch, gnu/packages/patches/scribus-1.5.8-poppler-22.2.0-2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/scribus.scm (scribus)[source]: Add patches. [arguments]: Enable WANT_CPP17 option.
2023-04-24gnu: gnucash: Update help installation prefix.Maxim Cournoyer
The help installation prefix was changed upstream to match the XDG 'help-spec' specification (see: https://www.freedesktop.org/wiki/Specifications/help-spec/). * gnu/packages/gnucash.scm (gnucash) [arguments]: Adjust install-docs phase.
2023-04-24gnu: python-tlsh: Fix build.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-tlsh) [build-system]: Switch to python-build-system. [arguments]: Remove #:out-of-source. Remove install phase override. Add a configure, chdir and adjust the check phase override. [inputs]: Delete field. [native-inputs]: New field.
2023-04-24gnu: sicp: Fix build.Maxim Cournoyer
* gnu/packages/scheme.scm (sicp) [build-system]: Use copy-build-system. [native-inputs]: Remove source input. [arguments]: Remove #:modules and #:builder arguments. Add #:install-plan and #:phases arguments. Patch out obsolete call.
2023-04-24gnu: python-pdbpp: Update to 0.10.3-0.e1c2e34.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-pdbpp): Update to 0.10.3-0.e1c2e34. [arguments]: Add pretend-version phase.
2023-04-24gnu: docker-compose: Use python-jsonschema-3 to fix build.Maxim Cournoyer
* gnu/packages/docker.scm (docker-compose) [inputs]: Replace python-jsonschema with python-jsonschema-3.
2023-04-24gnu: Add python-jsonschema-3.Maxim Cournoyer
* gnu/packages/python-xyz.scm (python-jsonschema-3): New variable.
2023-04-25gnu: emacs-password-store: Update to 2.3.0.Mekeor Melire
* gnu/packages/emacs-xyz.scm (emacs-password-store): Update to 2.3.0. [propagated-inputs]: Remove emacs-auth-source-pass. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: Add deal.Nicolas Goaziou
* gnu/packages/games.scm (deal): New variable.
2023-04-25gnu: lagrange: Update to 1.15.8.Nicolas Goaziou
* gnu/packages/web-browsers.scm (lagrange): Update to 1.15.8.
2023-04-25gnu: fet: Update to 6.9.0.Nicolas Goaziou
* gnu/packages/education.scm (fet): Update to 6.9.0.
2023-04-25gnu: giac: Update to 1.9.0-45.Nicolas Goaziou
* gnu/packages/algebra.scm (giac): Update to 1.9.0-45.
2023-04-25gnu: purescript: Update to 0.15.8.jgart
* gnu/packages/purescript.scm (purescript): Update to 0.15.8. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-25gnu: audacious: Update to 4.3.Yovan Naumovski
* gnu/packages/music.scm (audacious): Update to 4.3. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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