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2021-02-12pull: Create the "${XDG_CONFIG_HOME}/guix" directory when needed.宋文武
This fixes <https://bugs.gnu.org/46269>. * guix/scripts/pull.scm (ensure-default-profile): Add a 'mkdir-p' call before 'symlink'.
2021-02-12gnu: python-invoke: Update to 1.5.0.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-invoke): Update to 1.5.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12gnu: python-invoke: Patch reference to bash.Tanguy Le Carrour
* gnu/packages/python-xyz.scm (python-invoke)[arguments]: Patch the reference to 'bash' in the source. [inputs]: Add bash. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12gnu: pari-gp: Update to 2.13.1.Andreas Enge
* gnu/packages/algebra.scm (pari-gp): Update to 2.13.1.
2021-02-12gnu: Fix indentation in OpenJDK packages.Leo Prikler
* gnu/packages/java.scm (openjdk9, openjdk10, openjdk11, openjdk12) (openjdk13, openjdk14): Untabify and indent with Emacs.
2021-02-12gnu: openjdk@11: Add phase to hardcode libraries.Björn Höfling
This fixes a NullPointerException related to using fontconfig, see also <https://bugs.gnu.org/41177>. * gnu/packages/java.scm (openjdk11)[arguments]: Add patch-jni-libs phase. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-02-12gnu: openjdk@9 : Add phase to hardcode libraries.Björn Höfling
This fixes a NullPointerException related to using fontconfig, see also <https://bugs.gnu.org/41177>. * gnu/packages/java.scm (openjdk9)[arguments]: Add patch-jni-libs phase. Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
2021-02-12doc: Fix for 'guix pull'.宋文武
Fixes a regression introduced in db6b9d2f4bc59511904e8c1412d0257675c46095. * doc/guix.texi (File-Sharing Services): Remove space after '@pxref'.
2021-02-12gnu: bpytop: Don't propagated python-psutil.宋文武
* gnu/packages/admin.scm (bpytop): Move python-psutil to propagated-inputs.
2021-02-12gnu: Add xkeysnail.Zheng Junjie
* gnu/packages/xdisorg.scm (xkeysnail): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12gnu: Add bpytop.Zheng Junjie
* gnu/packages/admin.scm (bpytop): New variable.
2021-02-12gnu: dwl: Fix command name in description.宋文武
* gnu/packages/wm.scm (dwl)[description]: Fix typo.
2021-02-12gnu: Add dwl.Zheng Junjie
* gnu/packages/wm.scm (dwl): New variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12gnu: pianobar: Update to 2020.11.28.Stefan Reichör
* gnu/packages/music.scm (pianobar): Update to 2020.11.28. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12services: Add transmission-daemon service.Simon South
* gnu/services/file-sharing.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * po/packages/POTFILES.in: Add it. * tests/services/file-sharing.scm: New file. * Makefile.am (SCM_TESTS): Add it. * doc/guix.texi (File-Sharing Services): New section. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-12gnu: zfs: Update to 2.0.3.raid5atemyhomework
* gnu/packages/file-systems.scm (zfs): Update to 2.0.3. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2021-02-11gnu: diffoscope: Update to 166.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 166. [source]: Add patch to use magic.open compatibility interface. * gnu/packages/patches/diffoscope-revert-to-magic-open.patch: New file. * gnu/local.mk [dist_patch_DATA]: New patch.
2021-02-11gnu: opam: Update to 2.0.8.Julien Lepiller
* gnu/packages/ocaml.scm (opam): Update to 2.0.8.
2021-02-11gnu: emacs-marginalia: Update to 0.3.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.3.
2021-02-11gnu: emacs-consult: Update to 0.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-consult): Update to 0.5.
2021-02-11gnu: bowtie1: Update to 1.3.0.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bowtie1): Update to 1.3.0. [arguments]: Set CC in make flags. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-02-11doc: Try to improve the branching workflow.Leo Famulari
* doc/contributing.texi (Submitting Patches): Introduce the use of "-frozen" branch names.
2021-02-11gnu: r-gage: Update to 2.40.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gage): Update to 2.40.1.
2021-02-11gnu: r-msnbase: Update to 2.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-msnbase): Update to 2.16.1.
2021-02-11gnu: r-methylkit: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-methylkit): Update to 1.16.1.
2021-02-11gnu: r-delayedarray: Update to 0.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.16.1.
2021-02-11gnu: r-biomart: Update to 2.46.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.46.3.
2021-02-11gnu: r-edger: Update to 3.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.32.1.
2021-02-11gnu: r-iranges: Update to 2.24.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.24.1.
2021-02-11gnu: r-s4vectors: Update to 0.28.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.28.1.
2021-02-11gnu: r-systempiper: Update to 1.24.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-systempiper): Update to 1.24.3.
2021-02-11gnu: r-gseabase: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gseabase): Update to 1.52.1.
2021-02-11gnu: r-genefilter: Update to 1.72.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genefilter): Update to 1.72.1.
2021-02-11gnu: r-delayedmatrixstats: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.12.3.
2021-02-11gnu: r-sparsematrixstats: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.2.1.
2021-02-11gnu: r-scran: Update to 1.18.5.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.18.5.
2021-02-11gnu: r-scuttle: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.0.4.
2021-02-11gnu: r-beachmat: Update to 2.6.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.6.4.
2021-02-11gnu: r-rhdf5lib: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.12.1.
2021-02-11gnu: r-hdf5array: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.18.1.
2021-02-11gnu: r-preprocesscore: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-preprocesscore): Update to 1.52.1.
2021-02-11gnu: r-chemminer: Update to 3.42.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chemminer): Update to 3.42.1.
2021-02-11gnu: r-gdsfmt: Update to 1.26.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.26.1.
2021-02-11gnu: r-cytolib: Update to 2.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.2.1.
2021-02-11gnu: r-multidataset: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multidataset): Update to 1.18.1.
2021-02-11gnu: r-clusterprofiler: Update to 3.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.18.1.
2021-02-11gnu: r-enrichplot: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.10.2.
2021-02-11gnu: r-matrixgenerics: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.2.1.
2021-02-11gnu: r-diffbind: Update to 3.0.13.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.0.13.
2021-02-11gnu: OpenLDAP: Update to 2.4.57 [security fixes].Leo Famulari
Fixes CVE-2020-{36221,36222,36223,36224,36225,36226,36226,36228,36229,36230}. * gnu/packages/openldap.scm (openldap-2.4.57): New variable. (openldap)[replacement]: New field.
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