Age | Commit message (Collapse) | Author |
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* gnu/packages/parallel.scm (parallel)[inputs]: Add bash-minimal.
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* gnu/packages/parallel.scm (parallel): Update to 20220722.
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* gnu/packages/cran.scm (r-rcppalgos): New variable.
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* gnu/packages/cran.scm (r-phylotools): New variable.
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* gnu/packages/bioinformatics.scm (python-scanorama): New variable.
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* gnu/packages/bioinformatics.scm (python-intervaltree): Update to 3.1.0.
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* gnu/packages/python-science.scm (python-geosketch): New variable.
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* gnu/packages/python-science.scm (python-fbpca): New variable.
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* gnu/packages/finance.scm (monero-gui): Update to 0.18.0.0.
[inputs]: remove labels.
[arguments]: Use gexps.
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* gnu/packages/finance.scm (monero): Update to 0.18.0.0.
[source]: Update snippet.
[arguments]: Use gexps.
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* gnu/packages/emulators.scm (scummvm): Update to 2.6.0.
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* gnu/packages/emacs-xyz.scm (emacs-clojure-mode): Update to 5.15.1.
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* gnu/home/services.scm (compute-activation-script): Add explicit dependency
on env to activation script.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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* gnu/packages/music.scm (strawberry): Update to 1.0.7.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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* gnu/packages/engineering.scm (kicad): Update to 6.0.7.
Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
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* gnu/packages/bioconductor.scm (r-infercnv): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/cran.scm (r-phyclust): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/node.scm (node-lts)[inputs]: Replace icu4c-70 with
icu4c-71.
[native-inputs]: Same.
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* gnu/packages/qt.scm (qtlottie): New variable.
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* gnu/tests/telephony.scm (%dummy-jami-account-partial): New variable.
(make-jami-os): Add a PARTIAL? argument and use it to select the jami-account
variant to use.
(%jami-os-provisioning-partial): New variable.
(run-jami-test): Add a PARTIAL? argument, and use it to select operating
system variant. Skip allowed-contacts and moderators test when PARTIAL? is
true.
(%test-jami-provisioning-partial): New test.
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Fixes <https://issues.guix.gnu.org/56799>.
This partially reverts 8cb1a49a3998c39f315a4199b7d4a121a6d66449.
Rationale: *unspecified* cannot be serialized thus used as a G-Expression
input, which is problematic/inconvenient when using deeply nested records. As
an example, jami-service-type was broken when using partially defined
<jami-account> records.
* gnu/services/configuration.scm (define-maybe-helper): Check against the
'unset symbol.
(normalize-field-type+def): Adjust value to 'unset.
(define-configuration-helper): Use 'unset as the default value thunk.
* gnu/services/file-sharing.scm (serialize-maybe-string): Check against the
'unset symbol.
(serialize-maybe-file-object): Likewise.
* gnu/services/messaging.scm (define-all-configurations): Use 'unset as
value.
(raw-content?): Check against 'unset symbol.
(prosody-configuration)[http-max-content-size]: Default to 'unset.
[http-external-url]: Likewise.
[mod-muc]: Likewise.
[raw-content]: Likewise.
* gnu/services/networking.scm (opendht-configuration): Adjust documentation.
* gnu/services/telephony.scm (jami-shepherd-services): Replace *undefined*
with the 'unset symbol.
* tests/services/configuration.scm ("maybe type, no default"): Check against
the 'unset symbol.
* doc/guix.texi: Regenerate the opendht-configuration,
openvpn-client-configuration and openvpn-server-configuration documentation.
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* guix/build-system/qt.scm (qt-build)[qtbase]: Specify a default value. Lower
it using ungexp-native.
(qt-cross-build): Likewise.
Reported-by: Maxime Devos <maximedevos@telenet.be> and others.
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* gnu/packages/bioinformatics.scm (python-bbknn): Update to 1.5.1.
[propagated-inputs]: Add python-pandas.
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* gnu/packages/admin.scm (fail2ban): New variable.
* gnu/packages/patches/fail2ban-0.11.2_CVE-2021-32749.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-setuptools-drop-2to3.patch,
gnu/packages/patches/fail2ban-0.11.2_fix-test-suite.patch,
gnu/packages/patches/fail2ban-paths-guix-conf.patch,
gnu/packages/patches/fail2ban-python310-server-action.patch,
gnu/packages/patches/fail2ban-python310-server-actions.patch,
gnu/packages/patches/fail2ban-python310-server-jails.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[arguments]: Use
G-expressions.
<#:phases>: Remove trailing boolean.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs,
inputs, propagated-inputs]: Remove labels.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (dealii): Update to 9.4.0.
[propagated-inputs]: Replace sundials-5 with sundials.
(dealii-openmpi)[propagated-inputs]: Replace sundials-openmpi-5 with
sundials-openmpi.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (dealii)[snippet, arguments]: Use
G-expressions.
(dealii-openmpi)[arguments]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (trilinos-for-dealii-openmpi)[native-inputs]:
Add gcc-7 to fix the failing build with newer versions of gcc.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioconductor.scm (r-muscat): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/mail.scm (mu): Update to 1.8.7.
[source]: Fetch from git.
[build-system]: Use meson-build-system.
[native-inputs]: Remove glib:bin and tzdata; add gnupg and texinfo; use new
style.
[inputs]: Remove guile.
[arguments]: Remove obsolete 'patch-configure, 'fix-ffi, and
'check-tz-setup phases. Rename 'patch-bin-sh-in-tests
to 'patch-bin-references and update it.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/web-browsers.scm (qutebrowser): Fix indentation.
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Fixes <https://issues.guix.gnu.org/56864>, which is a regression introduced
with a0beb297a352930b89051ff258a06d78f224d6b9.
* gnu/packages/web-browsers.scm (qutebrowser)
[phases]{wrap-qt-process-path}: Do not use the (no longer valid)
"qtwebengine-5" label; instead, locate QtWebEngineProcess via
'search-input-file'.
Reported-by: Jack Hill <jackhill@jackhill.us>
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* gnu/packages/bioinformatics.scm (r-millefy): New variable.
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ppc64 and aarch64 do not raise exception and thus output and exit code
for test is different.
See:
https://github.com/Exiv2/exiv2/issues/365 and
https://github.com/Exiv2/exiv2/issues/933
* gnu/packages/image.scm (exiv2)[arguments]: Add 'adjust-tests' phase.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python-xyz.scm (python-biblib): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This is a patch that fixes "<executable name>: this program must be setgid smtpq".
* gnu/services/mail.scm (<opensmtpd-configuration>)[setgid-commands?]: New field.
(opensmtpd-set-gids): New procedure.
(opensmtpd-service-type)[extensions]: Add SETUID-PROGRAM-SERVICE-TYPE extension.
* doc/guix.texi (Mail Services): Document it.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tor.scm (tractor): Update to 3.14.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/bioconductor.scm (r-anota)[description]: Add comma after
“i.e.”.
* gnu/packages/code.scm (xenon)[description]: Same.
* gnu/packages/cran.scm (r-crosstalk)[description]: Same.
* gnu/packages/python-xyz.scm (python-radon)[description]: Same.
* gnu/packages/statistics.scm (r-logspline)[description]: Same.
* gnu/packages/suckless.scm (tabbed)[description]: Same.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (hdf5-1.8)[arguments]<#:phases>: Add missing
comma to linker flag.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/guile-xyz.scm (guile-lens)
[phases]{run-hall}: replace "dist" to "build-system".
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/graphviz.scm (xdot)[inputs]: Replace librsvg with
librsvg-for-system.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/security-token.scm (cardpeek): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/astronomy.scm: (python-sep): Update to 1.2.1.
Inherit from libsep
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/astronomy.scm: (libsep): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/tls.scm (gnutls-latest): New variable.
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* guix/build/download.scm (url-fetch)[fetch]: In the http/https case,
close PORT before returning.
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* gnu/packages/bioinformatics.scm (python-bbknn)[arguments]: Add phase
'set-numba-cache-dir.
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* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable
test_densmap_trustworthiness_on_iris_supervised.
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* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Add phase
to set NUMBA_CACHE_DIR.
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