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2024-01-11gnu: r-patchwork: Update to 1.2.0....* gnu/packages/cran.scm (r-patchwork): Update to 1.2.0. Change-Id: I10574362f942182b47d29d73747355cec2d7111a Ricardo Wurmus
2024-01-11gnu: r-gbm: Update to 2.1.9....* gnu/packages/cran.scm (r-gbm): Update to 2.1.9. Change-Id: I2612b6656545b092e8d3ea17c6cf355f5aa0466f Ricardo Wurmus
2024-01-11gnu: r-yulab-utils: Update to 0.1.3....* gnu/packages/cran.scm (r-yulab-utils): Update to 0.1.3. Change-Id: Icac6a3048d7c1f6b2dc007027a2acfb34e927930 Ricardo Wurmus
2024-01-11gnu: r-compositions: Update to 2.0-7....* gnu/packages/cran.scm (r-compositions): Update to 2.0-7. Change-Id: I79365ad9f61257a1e8feb4697f51db9615845813 Ricardo Wurmus
2024-01-11gnu: r-targets: Update to 1.4.1....* gnu/packages/cran.scm (r-targets): Update to 1.4.1. Change-Id: Ifc7b526b2f0b198875111a17568f40f660a1ac9d Ricardo Wurmus
2024-01-11gnu: r-tarchetypes: Update to 0.7.11....* gnu/packages/cran.scm (r-tarchetypes): Update to 0.7.11. Change-Id: Ia87abdf6690b3db8e43be009e8948777293f0ead Ricardo Wurmus
2024-01-11gnu: r-writexls: Update to 6.5.0....* gnu/packages/cran.scm (r-writexls): Update to 6.5.0. Change-Id: I148760efa41cc8b4c6762638629f79296e61ca7a Ricardo Wurmus
2024-01-11gnu: r-ggrepel: Update to 0.9.5....* gnu/packages/cran.scm (r-ggrepel): Update to 0.9.5. Change-Id: Ib87cbfacc9f3fce1d1e4bc0d9cbb0fb467522bfb Ricardo Wurmus
2024-01-11gnu: r-rcpp: Update to 1.0.12....* gnu/packages/cran.scm (r-rcpp): Update to 1.0.12. Change-Id: Ia0e182858d8693d00d646bf4f4f38e064674f5bc Ricardo Wurmus
2024-01-11gnu: r-glue: Update to 1.7.0....* gnu/packages/cran.scm (r-glue): Update to 1.7.0. Change-Id: Ic843c657fe483c677af10b7a98bdb654d0441561 Ricardo Wurmus
2024-01-11gnu: r-reprex: Update to 2.1.0....* gnu/packages/cran.scm (r-reprex): Update to 2.1.0. Change-Id: I3c5e7f79cd7b6171ae9ec4562ce8866455f05ae6 Ricardo Wurmus
2024-01-11gnu: r-astsa: Update to 2.1....* gnu/packages/cran.scm (r-astsa): Update to 2.1. Change-Id: Ia3ceb05742c9acdd8fbb117f342d526bf7ee1bc1 Ricardo Wurmus
2024-01-11gnu: r-ggpp: Update to 0.5.6....* gnu/packages/cran.scm (r-ggpp): Update to 0.5.6. Change-Id: Ib9a5bb2ff59381f301f481e189a196706cdbb928 Ricardo Wurmus
2024-01-11gnu: r-zcompositions: Update to 1.5.0-1....* gnu/packages/cran.scm (r-zcompositions): Update to 1.5.0-1. Change-Id: I472ebcf9f2d3f1d401f19b4a67b27bb892249cac Ricardo Wurmus
2024-01-11gnu: r-castor: Update to 1.8.0....* gnu/packages/cran.scm (r-castor): Update to 1.8.0. [propagated-inputs]: Add r-jsonlite. Change-Id: I00ffcf5cbcd4badf644ec2572421c6df31792670 Ricardo Wurmus
2024-01-11gnu: r-rcurl: Update to 1.98-1.14....* gnu/packages/statistics.scm (r-rcurl): Update to 1.98-1.14. [native-inputs]: Move libxml2 from here... [inputs]: ...to here. Change-Id: Ib1b3326a997c7f56053715682b43606b3153c140 Ricardo Wurmus
2024-01-11gnu: r-rstan: Update to 2.32.5....* gnu/packages/cran.scm (r-rstan): Update to 2.32.5. [properties]: Tell updater to leave tzdata-for-tests. Change-Id: I8a12fdea4a0197fae1610826be9ccb856c25afb7 Ricardo Wurmus
2024-01-11gnu: r-topicmodels: Update to 0.2-16....* gnu/packages/cran.scm (r-topicmodels): Update to 0.2-16. [properties]: Tell updater not to remove GSL from inputs. Change-Id: I7940d546af32240b3a45bc64f7b1b2361ea8bf0f Ricardo Wurmus
2024-01-11gnu: r-rpostgresql: Update to 0.7-6....* gnu/packages/cran.scm (r-rpostgresql): Update to 0.7-6. [properties]: Tell updater not to remove postgresql input. Change-Id: Id88180f2781022b1554286f4beee85183ff474ac Ricardo Wurmus
2024-01-11gnu: r-readr: Update to 2.1.5....* gnu/packages/statistics.scm (r-readr): Update to 2.1.5. Change-Id: If3329e6b01db9fb457491ac44cdbbc97b0ec7c7c Ricardo Wurmus
2024-01-11gnu: python-afdko: Disable failing test....* gnu/packages/fontutils.scm (python-afdko)[arguments]: Disable test_alt_missing_glyph. Change-Id: I49f9d27f61955fe2bf9dd9d5cf22499e813ff3d0 Ricardo Wurmus
2024-01-10gnu: openjdk11: Fix time bomb in ‘GenerateCurrencyData.java’....Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk11)[source]: Add patch. Change-Id: I5ff53b8dd90598721a6c3814980c6553013b347c Ricardo Wurmus
2024-01-10gnu: openjdk10: Simplify....* gnu/packages/java.scm (openjdk10)[arguments]: Remove trailing #T from build phase. Change-Id: Icdb082b250704fe6de3a5e4323f29fa5db8446c7 Ricardo Wurmus
2024-01-10gnu: openjdk10: Fix time bomb in ‘GenerateCurrencyData.java’....Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk10)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb2.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I42fc14d305883f672cd6764a0ee6462852e41a5b Ricardo Wurmus
2024-01-10gnu: Fix patch location....This is a follow-up to commit db7488a7fbd829d25b0b5c5e53b1c680b67832b1. * gnu/local.mk (dist_patch_DATA): Restore "packages/" prefix. Change-Id: I1f8e420e75c3f4e1927dac935c2de337fd1306eb Ricardo Wurmus
2024-01-10gnu: openjdk9: Simplify....* gnu/packages/java.scm (openjdk9)[source]: Remove BEGIN. [arguments]: Delete trailing #T from build phases. Change-Id: If011dc595c1b9b0d79fd5bb727a8680d1ad4d100 Ricardo Wurmus
2024-01-10gnu: openjdk9: Fix time bomb in ‘GenerateCurrencyData.java’....Fixes <https://issues.guix.gnu.org/68333>, as well. This is a companion to commit 5c0f77f4241c9beac0c82deae946bfdc70b49ff0. * gnu/packages/java.scm (openjdk9)[source]: Add patch. * gnu/packages/patches/openjdk-currency-time-bomb.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Change-Id: I45ca1fe5bad922307eba64d46a330a8f233c0f55 Ricardo Wurmus
2024-01-10gnu: python-distributed: Disable breaking test....This test times out since the merge of the mesa-updates branch. * gnu/packages/python-science.scm (python-distributed)[arguments]: Disable test_tell_workers_when_peers_have_left. Change-Id: Ib65b971a3a821ea13d36a4be60658ffc366ca6ac Ricardo Wurmus
2024-01-10gnu: Add r-jaspar2020....* gnu/packages/bioconductor.scm (r-jaspar2020): New variable. Change-Id: I84f0fc2a7defc5d179ffc24aa1f30177cb3b3060 nafkhamdc
2024-01-10gnu: Add r-dsb....* gnu/packages/bioconductor.scm (r-dsb): New variable. Change-Id: I34b91da1ae177bd37cfa548c5f6fede453f29bcd nafkhamdc
2024-01-10gnu: r-signac: Update to 1.12.0-1.8ecdde2....* gnu/packages/bioinformatics.scm (r-signac): Update to 1.12.0-1.8ecdde2. Change-Id: Ib852f7a23768383fc62d60577f2aaa893c509317 nafkhamdc
2024-01-10gnu: Add r-escape....* gnu/packages/bioconductor.scm (r-escape): New variable. Change-Id: Ia308f9c90fa81c3304f97daa4f56ae4cd722d5cc nafkhamdc
2024-01-10gnu: Add python-telomerecat....* gnu/packages/bioinformatics.scm (python-telomerecat): New variable. Change-Id: Ice4cd367cab677466630f44f6900fc38e3be350c Ricardo Wurmus
2024-01-10gnu: Add python-parabam....* gnu/packages/bioinformatics.scm (python-parabam): New variable. Change-Id: I66ccf5fd0647f908f1cefd38f0d92e589a81683b Ricardo Wurmus
2024-01-10gnu: icedtea: Fix time bomb in ‘GenerateCurrencyData.java’....Fixes <https://issues.guix.gnu.org/68333>. * gnu/packages/java.scm (icedtea-7)[drop]: Add optional ‘patches’ parameter and honor it. [native-inputs]: Add patch for “jdk-drop”. (icedtea-8): Likewise. * gnu/packages/patches/jdk-currency-time-bomb.patch, gnu/packages/patches/jdk-currency-time-bomb2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. Change-Id: I3b4cf562ce4bedb87ce0e7c289e431fbb0dbb6f8 Ludovic Courtès
2024-01-10gnu: mesa: Fix cross-compilation....* gnu/packages/gl.scm(mesa)[arguments]<#:phases>: When cross-compiling, force the use of the cmake method to find llvm. Change-Id: I27f6f4d9d71028c15588eeade48d3a918c042b9c Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2024-01-10gnu: yaml-cpp: Update to 0.8.0....* gnu/packages/serialization.scm (yaml-cpp): Update to 0.8.0. Change-Id: I927111f2d103dbb30ff336b64dd4ab90c22312a0 Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Zheng Junjie
2024-01-10gnu: Add cl-stripe....* gnu/packages/lisp-xyz.scm (sbcl-stripe): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: Ideeff671b8577bcfceb241a86624ac26f1d077f7 Andre A. Gomes
2024-01-10gnu: nyxt: Update to 3.11.0....* gnu/packages/web-browsers.scm (nyxt): Update to 3.11.0. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Andre A. Gomes
2024-01-10gnu: cl-prompter: Update to 0.1.1-0.7890ed5....* gnu/packages/lisp-xyz.scm (sbcl-prompter): Update to 0.1.1-0.7890ed5. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net> Change-Id: I65a7d23d4a889c1d7c4821e83b8ea3a56701a5c8 Andre A. Gomes
2024-01-09Authorize Oleg (Sharlatan)'s key....* .guix-authorizations (sharlatan): Register PGP key fingerprint. Change-Id: I0d20e50a37971237721964852a404c5cf136f0be Maxim Cournoyer
2024-01-09tests: telephony: Fix typo....* gnu/tests/telephony.scm: Fix typo. Series-to: 65371@debbugs.gnu.org Series-postfix: telephony-team Series-version: 2 Change-Id: I3eb048b8cdd1335c45ffb61b08425a18a2e7a4b2 Maxim Cournoyer
2024-01-09tests: telephony: Fix VPATH builds....* gnu/tests/telephony.scm (%jami-account-content-sexp): New variable. Compute its value with `read` instead of using `include`. * gnu/tests/data/jami-dummy-account.dat (%jami-account-content-sexp): Remove variable. Make the file contain just the S-expression. Change-Id: I8d37aaf7b739f5f39715bfb8a9b8c9536385fd09 Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Wojtek Kosior
2024-01-09gnu: jami-docs: Update to 0.0.0-2.a48997d....* gnu/packages/jami.scm (jami-docs): Update to 0.0.0-2.a48997d. Change-Id: I0c6ee456dec6251a66d1566c855069f3ecf2e44e Maxim Cournoyer
2024-01-09gnu: jami: Update to 20231222.2....* gnu/packages/jami.scm (%jami-version): Rename to... (%jami-nightly-version): ... this. Update to 20231222.2. (%jami-daemon-commit): New variable. (%jami-sources): Delete variable. (libjami) Adjust source to use %jami-nightly-version, %jami-daemon-commit. [source]: Fetch from git. Apply libjami-ac-config-files.patch. [arguments] <make-flags>: Skip ut_media_player test. <phases>: Add extend-scheduler-test-timeout and extend-scheduler-test-timeout phases. [inputs]: Replace dbus-c++ with sdbus-c++. Add dhtnet. Replace libgit2 with libgit2-1.6. (jami): Set version to %jami-nightly-version. [source]: Fetch from git. Apply new jami-qml-tests-discovery.patch, jami-skip-tests-requiring-internet.patch and jami-unbundle-dependencies.patch patches. [arguments] <configure-flags>: Add -DWITH_DAEMON_SUBMODULE=OFF. <phases>: Delete change-directory/maybe. Adjust check phase. Add fake-x11-environment, copy-3rdparty-source-dependencies and disable-problematic-tests phases. [inputs]: Add md4c and tidy-html. * gnu/packages/patches/jami-qml-tests-discovery.patch: New file. * gnu/packages/patches/libjami-ac-config-files.patch: Likewise. * gnu/packages/patches/jami-skip-tests-requiring-internet.patch: Likewise. * gnu/packages/patches/jami-unbundle-dependencies.patch: Likewise. * gnu/packages/patches/jami-libjami-headers-search.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/patches/jami-disable-integration-tests.patch: Adjust patch. Series-changes: 2 - Update Jami to latest nightly version (20231222.2) Change-Id: If30f1178bdfa29c4ea3e54dbb7997e360788adae Maxim Cournoyer
2024-01-09gnu: Add sortfilterproxymodel....* gnu/packages/jami.scm (sortfilterproxymodel): New variable. Change-Id: I7c46fce26d5fcdc98e8646e65dd119155a8b9287 Maxim Cournoyer
2024-01-09gnu: ffmpeg-jami: Relocate to (gnu packages video)....To avoid Guile module dependency cycles, inherited packages must be defined in the same module. Use this opportunity to simplify the patches applying mechanism, versioning custom patches the same as for other packages. * gnu/packages/patches/ffmpeg-jami-change-RTCP-ratio.patch: New file. * gnu/packages/patches/ffmpeg-jami-rtp_ext_abs_send_time.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusdec-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-enable-FEC.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-libopusenc-reload-packet-loss-at-encode.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-remove-mjpeg-log.patch: Likewise. * gnu/packages/patches/ffmpeg-jami-screen-sharing-x11-fix.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them. * gnu/packages/jami.scm (jami-apply-custom-patches): Delete procedure. (%ffmpeg-default-configure-flags): Delete variable. (ffmpeg-compose-configure-flags): Delete procedure. (ffmpeg-jami): Move to... * gnu/packages/video.scm (ffmpeg-jami): ... here. Apply patches to origin and repatriate configure flags. Change-Id: Id374fae18240cd76b224915d80b61422635ccb77 Maxim Cournoyer
2024-01-09gnu: ffmpeg-jami: Update configure flags....* gnu/packages/jami.scm (%ffmpeg-default-configure-flags): Add new flags. Change-Id: I1bac70e7b0ec58c46348a7138f7260b40cdf79f8 Maxim Cournoyer
2024-01-09gnu: pjproject-jami: Update and relocate....* gnu/packages/jami.scm (pjproject-jami): Move to... * gnu/packages/telephony.scm (pjproject-jami): ... here. Update to latest commit. [arguments]: Use same configure flags as done in Jami/DhtNet projects. Change-Id: I638364ebc94f17762ee072311b5fe439b7c6f837 Maxim Cournoyer
2024-01-09gnu: Add dhtnet....* gnu/packages/networking.scm (dhtnet): New variable. Change-Id: I91cc3541f476c8614be35b1ae7cb1740690f685a Maxim Cournoyer