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2017-11-30gnu: r-rcppeigen: Update to 0.3.3.3.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.3.3.1.
2017-11-30gnu: r-car: Update to 2.1-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-car): Update to 2.1-6.
2017-11-30gnu: r-sn: Update to 1.5-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sn): Update to 1.5-1.
2017-11-30gnu: r-openssl: Update to 0.9.9.Ricardo Wurmus
* gnu/packages/statistics.scm (r-openssl): Update to 0.9.9.
2017-11-30gnu: r-hms: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-hms): Update to 0.4.0. [propagated-inputs]: Add r-rlang and r-pkgconfig.
2017-11-30gnu: r-dendextend: Update to 1.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-dendextend): Update to 1.6.0.
2017-11-30gnu: r-recipes: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-recipes): Update to 0.1.1. [propagated-inputs]: Add r-broom and r-matrix.
2017-11-30gnu: Add r-broom.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): New variable.
2017-11-30gnu: Add r-psych.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): New variable.
2017-11-30gnu: mongodb: Use scons-build-system.Arun Isaac
* gnu/packages/databases.scm (mongodb): Switch to scons-build-system.
2017-11-30gnu: klick: Use scons-build-system.Arun Isaac
* gnu/packages/music.scm (klick): Switch to scons-build-system.
2017-11-30gnu: pingus: Use scons-build-system.Arun Isaac
* gnu/packages/games.scm (pingus): Switch to scons-build-system.
2017-11-30gnu: godot: Use scons-build-system.Arun Isaac
* gnu/packages/game-development.scm (godot): Switch to scons-build-system.
2017-11-30gnu: metabat: Use scons-build-system.Arun Isaac
* gnu/packages/bioinformatics.scm (metabat): Switch to scons-build-system.
2017-11-30gnu: serf: Use scons-build-system.Arun Isaac
* gnu/packages/web.scm (serf): Switch to scons-build-system.
2017-11-30gnu: gpick: Use scons-build-system.Arun Isaac
* gnu/packages/image.scm (gpick): Switch to scons-build-system.
2017-11-30gnu: linuxdcpp: Use scons-build-system.Arun Isaac
* gnu/packages/direct-connect.scm (linuxdcpp): Switch to scons-build-system.
2017-11-30build-system: Add scons-build-system.Arun Isaac
* guix/build-system/scons.scm: New file. * guix/build/scons-build-system.scm: New file. * Makefile.am (MODULES): Register them. * doc/guix.texi (Build Systems): Add scons-build-system.
2017-11-30gnu: scons: Update to 3.0.1.Arun Isaac
* gnu/packages/python.scm (scons): Update to 3.0.1. (scons-python2): New variable.
2017-11-30gnu: dtc: Fix build on 32 bits platforms.Mathieu Othacehe
* gnu/packages/bootloaders.scm (dtc)[patches]: Add dtc-32-bits-check.patch and dtc-format-modifier.patch to fix build and tests on 32 bits platforms. * gnu/packages/patches/dtc-32-bits-check.patch : New file. * gnu/packages/patches/dtc-format-modifier.patch : New file. * gnu/local.mk (dist_patch_DATA): Add two above patches.
2017-11-30gnu: Update r-matrix to 1.2-12.Roel Janssen
* gnu/packages/statistics.scm (r-matrix): Update to 1.2-12.
2017-11-30gnu: Update r-cluster to 2.0.6.Roel Janssen
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-11-30gnu: Update r-minimal to 3.4.3.Roel Janssen
* gnu/packages/statistics.scm (r-minimal): Update to 3.4.3.
2017-11-30gnu: guix: Move 'bootstrap' phase after 'unpack'.Ludovic Courtès
Suggested by Mark H Weaver <mhw@netris.org> at <https://lists.gnu.org/archive/html/guix-devel/2017-11/msg00389.html>. * gnu/packages/package-management.scm (guix)[arguments]: Move 'bootstrap' phase back after 'unpack'.
2017-11-30doc: Give the absolute file name of 'hydra.gnu.org.pub' in snippets.Ludovic Courtès
* doc/guix.texi (Substitute Server Authorization): Give the absolute file name of 'hydra.gnu.org.pub' in the snippet.
2017-11-30gnu: grub-efi: Disable tests on all platforms.Efraim Flashner
This is a follow-up to 56f0feb6781e3680541d7adc21d6b3b4746a33ca and 63087721bb54a14dc04ec424474386ae98f7771b, which accidentally enabled tests for grub-efi on other platforms. * gnu/packages/bootloaders.scm (grub-efi)[arguments]: Override inherited tests field and disable on all platforms.
2017-11-30gnu: exim: Update to 4.89.1.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (exim): Update to 4.89.1. [source]: Remove patches for fixed CVEs (all of them). * gnu/packages/patches/exim-CVE-2017-16943.patch: Delete file... * gnu/packages/patches/exim-CVE-2017-16944.patch: ...as well as this file... * gnu/packages/patches/exim-CVE-2017-1000369.patch: ...and this file. * gnu/local.mk (dist_patch_DATA): Remove all of them.
2017-11-29gnu: libgit2: Avoid dependency on cURL.Ludovic Courtès
This reduces the closure size from 225 MiB to 80 MiB, while still supporting HTTP(S) access. * gnu/packages/version-control.scm (libgit2)[source](modules, snippet): New fields. [inputs]: Remove CURL; add HTTP-PARSER.
2017-11-29gexp: Default to 'guile-2.2' for 'program-file'.Ludovic Courtès
Previously things returned by 'program-file', such as %MODPROBE-WRAPPER in (gnu services), would refer to 'guile-final'. This would introduce 'guile-final' in the system closure, which is otherwise absent. By referring to 'guile-2.2' we remove that extra Guile. * guix/gexp.scm (default-guile): Refer to GUILE-2.2 instead of GUILE-FINAL.
2017-11-29gnu: spectrwm: Fix description.Tobias Geerinckx-Rice
* gnu/packages/wm.scm (spectrwm)[description]: Fix typo and use @dfn.
2017-11-29gnu: ghc-happy: Update to 1.19.8.Tobias Geerinckx-Rice
* gnu/packages/haskell.scm (ghc-happy): Update to 1.19.8. [arguments]: Delete; run all tests.
2017-11-29gnu: curl: Update to 7.57.0 [fixes CVE-2017-{8816,8817,8818}].Leo Famulari
* gnu/packages/curl.scm (curl): Update replacement to 7.57.0. (curl-7.56.1): Replace with ... (curl-7.57.0): ... new variable.
2017-11-29gnu: libtorrent-rasterbar: Update to 1.1.5.Leo Famulari
* gnu/packages/bittorrent.scm (libtorrent-rasterbar): Update to 1.1.5.
2017-11-29gnu: grub :Disable tests on aarch64.Efraim Flashner
* gnu/packages/bootloaders.scm (grub)[arguments]: Add aarch64 to the architectures where the test suite is not run.
2017-11-29gexp: 'compiled-modules' disables deprecation warnings by default.Ludovic Courtès
This avoids repeated deprecation messages, particularly while running 'guix system build' or similar. * guix/gexp.scm (gexp->derivation): Add #:deprecation-warnings. Pass it to 'compiled-modules'. (compiled-modules): Add #:deprecation-warnings and honor it. * doc/guix.texi (G-Expressions): Update 'gexp->derivation' documentation. * guix/packages.scm (patch-and-repack): Pass #:deprecation-warnings #t.
2017-11-29vm: ISO9660 images include /etc and other standard files.Ludovic Courtès
* gnu/build/vm.scm (make-iso9660-image): Call 'populate-root-file-system' instead of a series of 'mkdir-p' calls. Add /etc to the arguments of xorriso.
2017-11-29linux-boot: Ensure /etc exists on the root file system.Ludovic Courtès
Fixes a regression introduced in c8289690365887ca1dd122645e479a89cf7cd969 whereby /etc would no longer be created as a result of calling 'mark-as-not-killable'. This would affect ISO images because 'make-iso9660-image' does not create /etc by default. In particular, the ISO installation image as created by the "iso-image-installer" test would fail to boot while creating the /root/etc/mtab symlink: <https://hydra.gnu.org/build/2352514/nixlog/9/raw>. * gnu/build/linux-boot.scm (mount-root-file-system): Make sure /root/etc exists.
2017-11-29gnu: openconnect: Use only vpnc-scripts.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openconnect)[inputs, arguments]: Substitute ‘vpnc-scripts’ for ‘vpnc’
2017-11-29gnu: vpnc: Use newer vpnc-scripts.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (vpnc)[source]: Remove patch. [inputs]: Remove net-tools and iproute2. Add vpnc-scripts. [arguments]: Delete ‘configure’ and ‘wrap-vpnc-script’ #:phases. Add ‘use-store-paths’ phase. * gnu/packages/patches/vpnc-script.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-11-29gnu: Add vpnc-scripts.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (vpnc-scripts): New variable.
2017-11-29gnu: grub: Disable tests on ARM platforms.Mathieu Othacehe
* gnu/packages/bootloaders (grub): Disable tests on ARM platforms. Half of the tests are failing on ARM.
2017-11-29gnu: Update r-mutationalpatterns to 1.4.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.4.1.
2017-11-29gnu: ghc-tasty-rerun: Update to 1.1.7.Tobias Geerinckx-Rice
* gnu/packages/haskell-check.scm (ghc-tasty-rerun): Update to 1.1.7.
2017-11-29gnu: limnoria: Update to 2017.10.01.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (limnoria): Update to 2017.10.01.
2017-11-29gnu: libxfont@1: Update to 1.5.4 [fixes CVE-2017-16611].Marius Bakke
* gnu/packages/xorg.scm (libxfont): Update to 1.5.4.
2017-11-29gnu: libxfont@2: Update replacement to 2.0.3 [fixes CVE-2017-16611].Marius Bakke
* gnu/packages/xorg.scm (libxfont2/fixed): Rename to ... (libxfont2-2.0.3): ... this. Make public. [version]: New field. [source]: Add URI and SHA256. Remove patches. (libxfont2)[replacement]: Change LIBXFONT2/FIXED to LIBXFONT2-2.0.3. * gnu/packages/patches/libxfont-CVE-2017-13720.patch, gnu/packages/patches/libxfont-CVE-2017-13722.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2017-11-29gnu: libxcursor: Replace with 1.1.15 [fixes CVE-2017-16612].Marius Bakke
* gnu/packages/xorg.scm (libxcursor-1.1.15): New public variable. (libxcursor)[replacement]: New field.
2017-11-29gnu: optipng: Fix CVE-2017-1000229.Marius Bakke
* gnu/packages/image.scm (optipng)[source](patches): New field. * gnu/packages/patches/optipng-CVE-2017-1000229.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2017-11-29gnu: Add r-copynumber.Roel Janssen
* gnu/packages/bioinformatics.scm (r-copynumber): New variable.
2017-11-29gnu: cran: Add r-rmpi.Roel Janssen
* gnu/packages/cran.scm (r-rmpi): New variable.
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