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2017-04-06gnu: Remove armadillo-for-rcpparmadillo.Ricardo Wurmus
This package is no longer useful, because upstream does not keep the tarballs of older releases. We use the bundled armadillo sources in the r-rccparmadillo package instead. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
2017-04-06gnu: r-rcpparmadillo: Update to 0.7.700.0.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpparmadillo): Update to 0.7.700.0.0. [source]: Do not delete bundled armadillo sources, because upstream no longer hosts previous versions. [propagated-inputs]: Remove "armadillo-for-rcpparmadillo". [arguments]: Remove because we no longer need to link with the armadillo library. * gnu/packages/bioinformatics.scm (r-deseq2)[arguments]: Remove because we no longer need to link with armadillo library.
2017-04-06gnu: armadillo: Update to 7.800.2.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
2017-04-06gnu: r-annotationforge: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.16.1.
2017-04-06gnu: r-shortread: Update to 1.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.32.1.
2017-04-06gnu: r-s4vectors: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.12.2.
2017-04-06gnu: r-iranges: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.8.2.
2017-04-06gnu: r-variantannotation: Update to 1.20.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.20.3.
2017-04-06gnu: r-limma: Update to 3.30.13.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.30.13.
2017-04-06gnu: r-genomicranges: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicranges): Update to 1.26.4.
2017-04-06gnu: r-annotationdbi: Update to 1.36.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.36.2.
2017-04-06gnu: r-genomicalignments: Update to 1.10.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.10.1.
2017-04-06gnu: r-rtracklayer: Update to 1.34.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.34.2.
2017-04-06gnu: r-genomicfeatures: Update to 1.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.26.4.
2017-04-06gnu: r-seqminer: Update to 5.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 5.7.
2017-04-06gnu: r-maldiquant: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-maldiquant): Update to 1.16.2.
2017-04-06gnu: r-ranger: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.7.0.
2017-04-06gnu: r-pbkrtest: Update to 0.4-7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-pbkrtest): Update to 0.4-7.
2017-04-06gnu: r-rcppeigen: Update to 0.3.2.9.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcppeigen): Update to 0.3.2.9.1.
2017-04-06gnu: r-mclust: Update to 5.2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mclust): Update to 5.2.3.
2017-04-06gnu: r-ggthemes: Update to 3.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ggthemes): Update to 3.4.0.
2017-04-06gnu: r-statmod: Update to 1.4.29.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.29.
2017-04-06gnu: r-vipor: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-vipor): Update to 0.4.5.
2017-04-06gnu: r-pracma: Update to 2.0.4.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-04-06gnu: r-mixtools: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mixtools): Update to 1.1.0. [propagated-inputs]: Remove "r-boot", add "r-survival".
2017-04-06gnu: r-viridis: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridis): Update to 0.4.0. [propagated-inputs]: Add "r-viridislite".
2017-04-06gnu: r-viridislite: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-viridislite): Update to 0.2.0.
2017-04-06gnu: r-matrixstats: Update to 0.52.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-matrixstats): Update to 0.52.1.
2017-04-06gnu: r-mvtnorm: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mvtnorm): Update to 1.0-6.
2017-04-06gnu: r-e1071: Update to 1.6-8.Ricardo Wurmus
* gnu/packages/statistics.scm (r-e1071): Update to 1.6-8.
2017-04-06gnu: r-sparsem: Update to 1.76.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sparsem): Update to 1.76.
2017-04-06gnu: r-xml: Update to 3.98-1.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml): Update to 3.98-1.6.
2017-04-06gnu: r-rsqlite: Update to 1.1-2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rsqlite): Update to 1.1-2.
2017-04-06gnu: r-rmarkdown: Update to 1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rmarkdown): Update to 1.4.
2017-04-06gnu: r-bbmisc: Update to 1.11.Ricardo Wurmus
* gnu/packages/statistics.scm (r-bbmisc): Update to 1.11.
2017-04-06gnu: r-backports: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-backports): Update to 1.0.5.
2017-04-06gnu: r-multitaper: Update to 1.0-13.Ricardo Wurmus
* gnu/packages/statistics.scm (r-multitaper): Update to 1.0-13.
2017-04-06gnu: r-xml2: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-xml2): Update to 1.1.1.
2017-04-06gnu: r-ade4: Update to 1.7-6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ade4): Update to 1.7-6.
2017-04-06gnu: r-data-table: Update to 1.10.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-data-table): Update to 1.10.4.
2017-04-06gnu: r-chron: Update to 2.3-50.Ricardo Wurmus
* gnu/packages/statistics.scm (r-chron): Update to 2.3-50.
2017-04-06gnu: r-cluster: Update to 2.0.6.Ricardo Wurmus
* gnu/packages/statistics.scm (r-cluster): Update to 2.0.6.
2017-04-06gnu: r-dbi: Update to 0.6-1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dbi): Update to 0.6-1.
2017-04-06gnu: r-gdtools: Update to 0.1.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gdtools): Update to 0.1.4.
2017-04-06gnu: r-stringr: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringr): Update to 1.2.0.
2017-04-06gnu: r-stringi: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-stringi): Update to 1.1.3.
2017-04-06gnu: r-rcpp: Update to 0.12.10.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.10.
2017-04-06gnu: r-digest: Update to 0.6.12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-digest): Update to 0.6.12.
2017-04-06gnu: r-survival: Update to 2.41-3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-survival): Update to 2.41-3.
2017-04-06gnu: r-mgcv: Update to 1.8-17.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mgcv): Update to 1.8-17.
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