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2023-08-28gnu: Add r-oompadata.Navid Afkhami
* gnu/packages/cran.scm (r-oompadata): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-mousegastrulationdata.Navid Afkhami
* gnu/packages/bioconductor.scm (r-mousegastrulationdata): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-bumpymatrix.Navid Afkhami
* gnu/packages/bioconductor.scm (r-bumpymatrix): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-msigdb.Navid Afkhami
* gnu/packages/bioconductor.scm (r-msigdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-earlywarnings.Navid Afkhami
* gnu/packages/cran.scm (r-earlywarnings): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-tgp.Navid Afkhami
* gnu/packages/cran.scm (r-tgp): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add r-maptree.Navid Afkhami
* gnu/packages/cran.scm (r-maptree): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-08-28gnu: Add python-scdamandtools.Navid Afkhami
* gnu/packages/bioinformatics.scm (python-scdamandtools): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-07-23gnu: linux-libre 6.1: Update to 6.1.47.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.1-version): Update to 6.1.47. (linux-libre-6.1-pristine-source): Update hash.
2023-07-23gnu: linux-libre: Update to 6.4.12.Leo Famulari
* gnu/packages/linux.scm (linux-libre-6.4-version): Update to 6.4.12. (linux-libre-6.4-pristine-source): Update hash.
2023-08-20Revert "gnu: system: Add home-directory-permissions field to <user-account>."Tobias Geerinckx-Rice
This reverts commit e9a5eebc785cb843034b38c5c5a6dd10904bdf2a, which as far as I can tell breaks system roll-backs thusly: [...] In gnu/build/accounts.scm: 239:27 3 (_ #<<password-entry> name: "root" password: "x" uid: 0 gid: 0 real-name: "System >) In unknown file: 2 (string-join ("root" "x" "0" "0" "System administrator" "/root" #t) ":" #<undefined>) In ice-9/boot-9.scm: 1685:16 1 (raise-exception _ #:continuable? _) 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: In procedure string-append: Wrong type (expecting string): #t
2023-08-27gnu: vbz-compression: Update to 1.0.3.Greg Hogan
* gnu/packages/bioinformatics.scm (vbz-compression): Update to 1.0.3. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: spdlog: Fix tests.Greg Hogan
* gnu/packages/patches/spdlog-fix-tests.patch: New file. * gnu/local.mk: Add it. * gnu/packages/logging.scm (spdlog)[source]: Use patch. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: catch2: Update to 3.4.0.Greg Hogan
* gnu/packages/check.scm (catch2): Update to 3.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: emacs-corfu-doc-terminal: Update to 0.9.Cayetano Santos
* gnu/packages/emacs-xyz.scm (emacs-corfu-doc-terminal): Update to 0.9. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: emacs-gptel: Update to 0.4.0.Cayetano Santos
* gnu/packages/emacs-xyz.scm (emacs-gptel): Update to 0.4.0. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: python-graph-tool: Update to 2.57.Greg Hogan
* gnu/packages/graph.scm (python-graph-tool): Update to 2.57. [propagated-inputs]: Add python-zstandard. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27gnu: gemmlowp: Update to 0.1-1.08e4bb3.Andy Tai
* gnu/packages/machine-learning.scm (gemmlowp): Update to 0.1-1.08e4bb3. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-27Update tex team.Andreas Enge
* etc/teams.scm.in: Add gnu/packages/texlive.scm to the files and Andreas Enge to the members of the tex team.
2023-08-27gnu: Add tree-sitter-cmake.Hilton Chain
* gnu/packages/tree-sitter.scm (tree-sitter-cmake): New variable.
2023-08-27gnu: phantomsocks: Update to 0.0.0-20230811053544-53b995bdab83.Hilton Chain
* gnu/packages/networking.scm (phantomsocks): Update to 0.0.0-20230811053544-53b995bdab83. [propagated-inputs]: Move go-github-com-google-gopacket and go-github-com-macronut-go-tproxy to... [inputs]: ...here.
2023-08-27gnu: picard: Update to 2.9.1.Hilton Chain
* gnu/packages/music.scm (picard): Update to 2.9.1. [uri]: Switch mirror. [#:phases]: Add phase 'set-HOME. Remove phase 'delete-failing-test.
2023-08-27gnu: emacs-orderless: Update to 1.0.Piotr Kwiecinski
* gnu/packages/emacs-xyz.scm (emacs-orderless): Update to 1.0, previously used commit was pointing to 0.8. Signed-off-by: Hilton Chain <hako@ultrarare.space>
2023-08-27gnu: emacs-hide-mode-line: Update to 1.0.3.Fabio Natali
* gnu/packages/emacs-xyz.scm (emacs-hide-mode-line): Update to 1.0.3. Signed-off-by: Hilton Chain <hako@ultrarare.space>
2023-08-27gnu: emacs-helpful: Update to 0.21.Cayetano Santos
* gnu/packages/emacs-xyz.scm (emacs-helpful): Update to 0.21. Signed-off-by: Hilton Chain <hako@ultrarare.space>
2023-08-27gnu: libsigrokdecode: Update to 0.5.3-0.e6962b3, fix build.Lu Hui
* gnu/packages/electronics.scm (libsigrokdecode): Update to 0.5.3-0.e6962b3. [source]: Use git-fetch. Remove patches. [native-inputs]: Add libtool. [arguments]<#:phases>: Remove bootstrap phase. * gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu-maintenance: Consider Qt source tarballs as "release files".Maxim Cournoyer
* guix/gnu-maintenance.scm (release-file?): Use positive logic in doc. Add a special case for Qt source archives. * tests/gnu-maintenance.scm ("release-file?"): Update test.
2023-08-26gnu-maintenance: Allow mirror URLs to fallback to the generic HTML updater.Maxim Cournoyer
* guix/gnu-maintenance.scm (http-url?): Extract from html-updatable-package?, modify to return the HTTP URL, and support the mirror:// scheme. (%disallowed-hosting-sites): New variable, extracted from html-updatable-package. (html-updatable-package?): Rewrite a mirror:// URL to an HTTP or HTTPS one. * guix/download.scm (%mirrors): Update comment.
2023-08-26gnu-maintenance: Add support to rewrite version in URL path.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/64015>. Fixes <https://issues.guix.gnu.org/65304>. Previously, the generic HTML updater would only look for the list of files found at the parent of its current source URL, ignoring that the URL may embed the version elsewhere in its path. This could cause 'guix refresh' to report no updates available, while in fact there were, such as for 'libuv'. * guix/gnu-maintenance.scm (strip-trailing-slash): New procedure. (%version-rx): New variable. (rewrite-url): New procedure. (import-html-release): New rewrite-url? argument. When true, use the above procedure. (import-html-updatable-release): Call import-html-release with #:rewrite-url set to #t. * tests/gnu-maintenance.scm ("rewrite-url, to-version specified") ("rewrite-url, without to-version"): New tests.
2023-08-26gnu-maintenance: Extract 'canonicalize-url' from 'import-html-release'.Maxim Cournoyer
* guix/gnu-maintenance.scm (canonicalize-url): New procedure, extracted from... (import-html-release): ... here. Use it. Rename inner PACKAGE variable to NAME, to explicit it is a string and not a package object.
2023-08-26gnu-maintenance: Document nested procedures in 'import-html-release'.Maxim Cournoyer
* guix/gnu-maintenance.scm (import-html-release): Add docstring to the 'file->signature/guess' and 'url->release' nested procedures.
2023-08-26gnu-maintenance: Accept package object in 'import-html-release' procedure.Maxim Cournoyer
This is in preparation for a new URL rewriting feature, which will need to have the current version information available. * guix/gnu-maintenance.scm (import-html-release): Update doc. Adjust default value of the DIRECTORY argument. Bind PACKAGE in lexical scope so that its value there is unchanged. (import-savannah-release, import-kernel.org-release) (import-html-updatable-release): Adjust accordingly.
2023-08-26gnu-maintenance: Fix indentation.Maxim Cournoyer
* guix/gnu-maintenance.scm: Re-indent file.
2023-08-26gnu-maintenance: Extract url->links procedure.Maxim Cournoyer
* guix/gnu-maintenance.scm (url->links): New procedure. (import-html-release): Use it.
2023-08-26gnu-maintenance: Fix docstring.Maxim Cournoyer
* guix/gnu-maintenance.scm (import-kernel.org-release): Fix docstring.
2023-08-26gnu-maintenance: Make base-url argument of import-html-release required.Maxim Cournoyer
It doesn't make sense to have it default to something like "https://kernel.org/pub"; it should always be provided explicitly. * guix/gnu-maintenance.scm (import-html-release) <#:base-url>: Turn keyword argument into a positional argument. Update doc. * guix/gnu-maintenance.scm (import-savannah-release): Adjust call accordingly. (import-kernel.org-release): Likewise. (import-html-updatable-release): Likewise.
2023-08-26gnu: libmtp: Update to 1.1.21.fanquake
* gnu/packages/libusb.scm (libmtp): Update to 1.1.21. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-26gnu: neomutt: Update to 20230517.flabbergasted
* gnu/packages/mail.scm (neomutt): Update to 20230517. Signed-off-by: Christopher Baines <mail@cbaines.net>
2023-08-26gnu: guix-build-coordinator: Update to 0-87.06a4469.Christopher Baines
* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-87.06a4469.
2023-08-26services: nar-herder: Specify a working directory.Christopher Baines
Mostly so that core dumps end up here. * gnu/services/guix.scm (nar-herder-shepherd-services): Specify a working directory.
2023-08-26services: guix-data-service: Specify a working directory.Christopher Baines
Mostly so that core dumps end up here. * gnu/services/guix.scm (guix-data-service-shepherd-services): Specify a working directory.
2023-08-26services: guix-build-coordinator: Specify a working directory.Christopher Baines
Mostly so that core dumps end up here. * gnu/services/guix.scm (guix-build-coordinator-shepherd-services): Specify a working directory.
2023-08-26gnu: pkgconf: Update to 2.0.2.Zheng Junjie
* gnu/packages/pkg-config.scm (pkgconf): Update to 2.0.2. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: xsecurelock: Update to 1.8.0.kiasoc5
* gnu/packages/xdisorg.scm (xsecurelock): Update to 1.8.0. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: ydotool: Update to 1.0.4.kiasoc5
* gnu/packages/xdisorg.scm (ydotool): Update to 1.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: xlockmore: Update to 5.72.kiasoc5
* gnu/packages/xdisorg.scm (xlockmore): Update to 5.72. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: autorandr: Update to 1.14.kiasoc5
* gnu/packages/xdisorg.scm (autorandr): Update to 1.14. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: mympd: Update to 11.0.4.Bruno Victal
* gnu/packages/mpd.scm (mympd): Update to 11.0.4. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-08-26gnu: rizin: Update to 0.6.1.宋文武
* gnu/packages/engineering.scm (rizin): Update to 0.6.1. [arguments]<#:phases>: Enable a now passing test (analysis_var).
2023-08-26gnu: freedroidrpg: Update to 1.0.宋文武
* gnu/packages/games.scm (freedroidrpg): Update to 1.0.
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