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2023-03-19gnu: r-climaemet: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-climaemet): Update to 1.1.0.
2023-03-19gnu: r-gson: Update to 0.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gson): Update to 0.1.0.
2023-03-19gnu: r-googlevis: Update to 0.7.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-googlevis): Update to 0.7.1. [native-inputs]: Add r-rmarkdown.
2023-03-19gnu: r-castor: Update to 1.7.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-castor): Update to 1.7.8.
2023-03-19gnu: r-cachem: Update to 1.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-cachem): Update to 1.0.7.
2023-03-19gnu: r-afpt: Update to 1.1.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-afpt): Update to 1.1.0.3.
2023-03-19gnu: r-mutoss: Update to 0.1-13.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mutoss): Update to 0.1-13.
2023-03-19gnu: r-valr: Update to 0.6.7.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-valr): Update to 0.6.7.
2023-03-19gnu: r-numbat: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-numbat): Update to 1.2.2.
2023-03-19gnu: r-memuse: Adjust indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-memuse): Adjust indentation.
2023-03-19gnu: r-shadowtext: Update indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-shadowtext): Adjust indentation.
2023-03-19gnu: Add r-mclogit.Ricardo Wurmus
* gnu/packages/cran.scm (r-mclogit): New variable.
2023-03-19gnu: Add r-memisc.Ricardo Wurmus
* gnu/packages/cran.scm (r-memisc): New variable.
2023-03-19gnu: r-qs: Update to 0.25.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-qs): Update to 0.25.5. [inputs]: Remove zlib.
2023-03-19gnu: r-leaflet: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.2.
2023-03-19gnu: r-sf: Update to 1.0-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 1.0-11. [inputs]: Remove zlib.
2023-03-19gnu: r-ggvis: Update to 0.4.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggvis): Update to 0.4.8. [source]: Remove five minified JavaScript files. [arguments]: Add build phase 'process-javascript. [native-inputs]: Add esbuild and js-lodash.
2023-03-19gnu: r-opencpu: Update to 2.2.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-opencpu): Update to 2.2.9. [source]: Remove two minified JavaScript files. [arguments]: Add build phases 'process-javascript. [native-inputs]: Add esbuild, r-r-rsp, and js-query.
2023-03-19gnu: r-bookdown: Update to 0.33.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.33. [source]: Delete three minified JavaScript files. [arguments]: Add build phase 'process-javascript. [native-inputs]: Add esbuild, js-clipboard, js-lunarjs, and js-mathquill.
2023-03-19gnu: r-haven: Update to 2.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-haven): Update to 2.5.2. [arguments]: Update to link with readstat. [inputs]: Add zlib.
2023-03-19gnu: readstat: Update to 1.1.9.Ricardo Wurmus
* gnu/packages/statistics.scm (readstat): Update to 1.1.9.
2023-03-19gnu: r-httpuv: Update to 1.6.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.6.9. [inputs]: Replace libuv with libuv-for-r-httpuv. [arguments]: Patch Makevars to link with that variant of libuv.
2023-03-19gnu: Add libuv-for-r-httpuv.Ricardo Wurmus
* gnu/packages/libevent.scm (libuv-for-r-httpuv): New variable.
2023-03-19gnu: r-dt: Update to 0.27.Ricardo Wurmus
* gnu/packages/statistics.scm (r-dt): Update to 0.27.
2023-03-19gnu: Add python-brian2.Lars-Dominik Braun
* gnu/packages/machine-learning.scm (python-brian2): New variable.
2023-03-19gnu: python-pillow: Fix CVE-2022-45199.Lars-Dominik Braun
Fixes: <https://issues.guix.gnu.org/issue/61172> * gnu/packages/python-xyz.scm (python-pillow/security-fixes): New variable. (python-pillow): Add replacement. * gnu/packages/patches/python-pillow-CVE-2022-45199.patch: New file. * gnu/local.mk: Register it.
2023-03-19gnu: Add a4pdf.Liliana Marie Prikler
* gnu/packages/pdf.scm (a4pdf): New variable.
2023-03-19gnu: komikku: Update to 1.14.0.Liliana Marie Prikler
* gnu/packages/gnome.scm (komikku): Update to 1.14.0.
2023-03-19gnu: zig: Build against a baseline CPU.Ekaitz Zarraga
* gnu/packages/zig.scm (zig-0.10)[#:configure-flags]: Add “-DZIG_TARGET_MCPU=baseline”. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2023-03-18gnu: Add tissue.Arun Isaac
* gnu/packages/web.scm (tissue): New variable.
2023-03-17gnu: bemenu: Update to 0.6.14.Yovan Naumovski
* gnu/packages/xdisorg.scm (bemenu): Update to 0.6.14. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17services: dict: Deprecate 'dicod-service' procedure.Bruno Victal
* doc/guix.texi (Miscellaneous Services): Remove 'dicod-service' mention. * gnu/services/dict.scm (dicod-service): Deprecate procedure. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17home: services: Add home-xmodmap-service-type.conses
* gnu/home/services/desktop.scm (home-xmodmap-service-type) (home-xmodmap-configuration): New variables; (serialize-xmodmap-configuration) (xmodmap-shepherd-service): New procedures; * doc/guix.texi (Desktop Services): Document it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17gnu: guile-gnutls: Do not expect gnulib shebangs to work.Vivien Kraus
* gnu/packages/tls.scm (guile-gnutls) [phase patch-more-shebangs]: Fix how autogen.sh invokes gnulib-tool, and how configure.ac invokes git-version-gen, so as not to rely on shebangs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17gnu: gnulib: Restore shebangs.Vivien Kraus
* gnu/packages/build-tools.scm (gnulib)[arguments]: Add 'restore-shebangs' phase. [inputs, native-inputs]: Add bash-minimal. [phase let-autogen-execute-gnulib-tool]: Specify a shell to execute gnulib-tool from autogen.sh. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17ui: format 'display-hint' output when no arguments are passed.Antero Mejr
When display-hint is given format specifiers such as "~%" but no arguments, it does not format the output, causing the specifiers to be visible in the displayed text. * guix/ui.scm (display-hint): Format output when no arguments are passed. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-03-17pack: "fakechroot" engine passes the recursive RUNPATH to ld.so.Ludovic Courtès
This is a followup to 58abd5873985e0cd9a2926867bf697c5e7bc01f9, which did not fully address <https://issues.guix.gnu.org/43491>. * guix/scripts/pack.scm (wrapped-package)[build](runpath): Rewrite in terms of 'file-needed/recursive'.
2023-03-17services: console-font: 'stop' method always returns #f.Ludovic Courtès
The 'stop' method of Shepherd services is supposed to return #f on success. * gnu/services/base.scm (console-font-shepherd-services): 'stop' method returns #f.
2023-03-17Revert "tests: pack: Fix indentation."Maxim Cournoyer
This reverts commit ac1d530d56c1a259630c8873b2281033878a4acb.
2023-03-17Revert gexp->derivation and computed-file indentation rules.Maxim Cournoyer
This reverts b1c25e2ce364741d1c257d3bb3ab773032807a80 and partially reverts 82daab42811a2e3c7684ebdf12af75ff0fa67b99, which means the computed-file and gexp->derivation procedures are now indented as normal procedures. Rationale: see the discussion at https://lists.gnu.org/archive/html/guix-devel/2023-03/msg00008.html. In a nutshell: the convention is to use special rules for special forms (macros), not for procedures. * .dir-locals.el (scheme-mode): Remove the special indentation rules for the computed-file and gexp->derivation procedures.
2023-03-17doc: Use 'mount --rbind' for chroot instructions.Maxim Cournoyer
This was reported by a user in #guix. It's at least necessary for /sys, to have the /sys/firmware/efivars location available insinde the chroot when using an UEFI system. * doc/guix.texi (Chrooting into an existing system): Replace --bind argument with --rbind Suggested-by: Josselin Poiret <dev@jpoiret.xyz>
2023-03-17gnu: ccextractor: Update to 0.94 and fix build.Maxim Cournoyer
* gnu/packages/gstreamer.scm (ccextractor): Update to 0.94. [source]: Apply patches. Add FIXME comment. [build-system]: Switch to gnu-build-system. [arguments]: Delete #tests? argument. Delete trailing #t and use gexps. Adjust configure flags accordingly, removing WITH_SHARING (doesn't exist for Autoconf) and adding '--without-rust'. Override check phase. [native-inputs]: Remove labels. Remove python-wrapper and perl. [propagated-inputs]: Remove labels. Remove nanomsg and zlib. Replace leptonica with leptonica-1.80. replace tesseract-ocr with tesseract-ocr-4. * gnu/packages/patches/ccextractor-add-missing-header.patch: New file. * gnu/packages/patches/ccextractor-autoconf-tesseract.patch: Likewise. * gnu/packages/patches/ccextractor-fix-ocr.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them.
2023-03-17gnu: Add tesseract-ocr-4.Maxim Cournoyer
* gnu/packages/ocr.scm (tesseract-ocr-4): New variable.
2023-03-17gnu: Add leptonica-1.80.Maxim Cournoyer
* gnu/packages/image.scm (leptonica-1.80): New variable.
2023-03-17home: services: ssh-agent: Handle setting of SSH_AUTH_SOCK.Jan (janneke) Nieuwenhuizen
* gnu/home/services/ssh.scm (home-ssh-agent-environment-variables): New procedure. (home-ssh-agent-service-type): Use it as ahome-environment-service type extension. * doc/guix.texi (Secure Shell): Remove advice about, and examples of setting SSH_AUTH_SOCK.
2023-03-17gnu: tdlib: Remove version 1.8.0.Zhu Zihao
emacs-telega no longer depends on this package. * gnu/packages/messaging.scm (tdlib-1.8.0): Remove variable. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-17gnu: gamin: Fix cross-compilation to riscv64.Z572
* gnu/packages/gnome.scm (gamin) [arguments]<#:phases>: Apply 'replace-config.sub for riscv64 too. [native-inputs]: Add config for riscv64 too. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-17gnu: m17n-lib: Fix cross-compile.Z572
* gnu/packages/emacs.scm (m17n-lib) [source]: Add m17n-lib-1.8.0-use-pkg-config-for-freetype.patch. [native-inputs]: When cross-compile add pkg-config, libtool, gettext-minimal, autoconf, automake. [arguments]: When cross-compile, add phase to fix rpl_malloc undefined references. * gnu/packages/patches/m17n-lib-1.8.0-use-pkg-config-for-freetype.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-17gnu: m17n-db: Fix cross-compile.Z572
* gnu/packages/emacs.scm (m17n-db) [inputs]: Move gettext-minimal to ... [native-inputs]: ... here. Signed-off-by: 宋文武 <iyzsong@member.fsf.org>
2023-03-17gnu: kicad: Update to 7.0.1.Peter Polidoro
* gnu/packages/engineering.scm (kicad): Update to 7.0.1. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
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