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2020-09-05gnu: seqmagick: Update to 0.8.0.Andreas Enge
* gnu/packages/bioinformatics.scm (seqmagick): Update to 0.8.0.
2020-09-05gnu: deluge: Update to 2.0.3.Kei Kebreau
* gnu/packages/bittorrent.scm (deluge): Update to 2.0.3. [source]: Update URL. [inputs]: Remove libtorrent, python2-chardet, python2-pygtk, python2-pyopenssl, python2-pyxdg, python2-service-identity, python2-twisted. [propagated-inputs]: Add gtk+, librsvg, libtorrent, python-pycairo, python-chardet, python-dbus, python-mako, python-pygobject, python-pillow, python-pyopenssl, python-pyxdg, python-rencode, python-service-identity, python-setproctitle, python-six, python-twisted, and python-zope-interface. [native-inputs]: Add python-wheel. [arguments]: Disable tests. Add 'fix-gettext-warning and 'wrap phase.
2020-09-05gnu: Add npiet.Jesse Gibbons
* gnu/packages/piet.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-09-05scripts: system: Expand some help messages.Efraim Flashner
* guix/scripts/system.scm (show-help): Add to '--share=SPEC' and '--expose=SPEC' that it also works for containers.
2020-09-05gnu: dunst: Update to 1.5.0.Oleg Pykhalov
* gnu/packages/dunst.scm (dunst): Update to 1.5.0.
2020-09-05gnu: sbcl-ironclad: Update to 0.51.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-ironclad): Update to 0.51.
2020-09-05gnu: sbcl-cl-webkit: Update to 20200905.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-webkit): Update to 20200905.
2020-09-05gnu: python-docker-py: Rename to python-docker.Andreas Enge
This is a follow-up to commit 3146b6da6dd3124f8693f48a9ed7ff8208324e23. * gnu/packages/docker.scm (python-docker-py): Rename to... (python-docker): ...this. (docker-compose): Adjust inputs. * gnu/packages/android.scm (fdroidserver): Adjust inputs.
2020-09-05gnu: Update gPodder to 3.10.16 and disable updater.raingloom
* gnu/packages/gpodder.scm (gpodder): Update to 3.10.16 and add patch. * gnu/packages/patches/gpodder-disable-updater.patch: New file * gnu/local.mk (dist_patch_DATA): Add patch Signed-off-by: Andreas Enge <andreas@enge.fr>
2020-09-05gnu: Add sbcl-clim-examples.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-clim-examples): New variable.
2020-09-05gnu: Add sbcl-mcclim-raster-image.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-mcclim-raster-image): New variable.
2020-09-05gnu: Add sbcl-mcclim-test-util.Guillaume Le Vaillant
* gnu/packages/lisp-xyz.scm (sbcl-mcclim-test-util): New variable.
2020-09-04gnu: linux-libre: Validate that the cleaned up tarball is free of blobs.Maxim Cournoyer
* gnu/packages/linux.scm (make-linux-libre-source): Call the deblob-check script on the generated tarball archive with the --use-awk and --list-blobs options.
2020-09-04gnu: make-linux-libre-source: Set output port buffering to line mode.Maxim Cournoyer
* gnu/packages/linux.scm (make-linux-libre-source): Set output port buffering to line mode via setvbuf. Remove the ad-hoc calls to force-output.
2020-09-04gnu: texlive-logreq: Correct synopsis.Paul Garlick
* gnu/packages/tex.scm (texlive-logreq)[synopsis]: Correct.
2020-09-04gnu: r-mnormt: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mnormt): Update to 2.0.2.
2020-09-04gnu: r-rfast: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rfast): Update to 2.0.0.
2020-09-04gnu: r-systemfonts: Update to 0.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.3.0. [propagated-inputs]: Add r-cpp11.
2020-09-04gnu: r-xgboost: Update to 1.2.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.2.0.1.
2020-09-04gnu: r-ingredients: Update to 2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ingredients): Update to 2.0.
2020-09-04gnu: r-xmlparsedata: Update to 1.0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-xmlparsedata): Update to 1.0.4.
2020-09-04gnu: r-rnifti: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rnifti): Update to 1.2.1.
2020-09-04gnu: r-trend: Update to 1.1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-trend): Update to 1.1.3.
2020-09-04gnu: r-ttr: Update to 0.24.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ttr): Update to 0.24.2.
2020-09-04gnu: r-cicero: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.6.2.
2020-09-04gnu: r-mixomics: Update to 6.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.12.2.
2020-09-04gnu: r-atacseqqc: Update to 1.12.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.12.4.
2020-09-04gnu: r-gkmsvm: Update to 0.81.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gkmsvm): Update to 0.81.0.
2020-09-04gnu: r-chippeakanno: Update to 3.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.22.3.
2020-09-04gnu: gmic: Update to 2.9.2.Tobias Geerinckx-Rice
* gnu/packages/image-processing.scm (gmic): Update to 2.9.2.
2020-09-04gnu: cifs-utils: Update to 6.11 [fixes CVE-2020-14342].Tobias Geerinckx-Rice
* gnu/packages/samba.scm (cifs-utils): Update to 6.11.
2020-09-04gnu: python-paramiko: Update to 2.7.2.Tobias Geerinckx-Rice
* gnu/packages/python-crypto.scm (python-paramiko): Update to 2.7.2.
2020-09-04gnu: Add texlive-logreq.Paul Garlick
* gnu/packages/tex.scm (texlive-logreq): New variable.
2020-09-04gnu: fpc: Fix reproducibility problem.Eric Bavier
* gnu/packages/pascal.scm (fpc)[arguments]: Add 'patch-release-date' to replace a build timestamp with the release date instead.
2020-09-04gnu: guix-jupyter: Fix compilation with Guile-JSON >= 4.3.x.Ludovic Courtès
Reported by wehlutyk on #guix. * gnu/packages/package-management.scm (guix-jupyter)[source]: Avoid 'define-json-mapping' name clash with Guile-JSON.
2020-09-04gnu: r-httpuv: Unvendor libuv.Lars-Dominik Braun
* gnu/packages/cran.scm (r-httpuv) [source]: Remove bundled libuv, add patch. [arguments] Rewrite header locations, fix pipe server issue. [inputs] Add libuv. * gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04gnu: taglib: Update to 1.12-beta-1 [security fixes].Pierre Langlois
This switches to a yet unreleased version of taglib, to make sure long standings issues and CVEs are covered until a proper release is made upstream. Among these, we have: - CVE-2017-12678 - CVE-2018-11439 - https://github.com/taglib/taglib/issues/864 * gnu/packges/mp3.scm (taglib): Update to 1.12-beta-1. [source]: Switch to using git-fetch.
2020-09-04gnu: node: Update 10.22.0.Pierre Langlois
* gnu/packages/node.scm (node): Update to 10.22.0. [inputs]: Replace nghttp2 with nghttp2-1.41.
2020-09-04gnu: Remove emacs-seq package.Pierre Langlois
It is included with emacs and installing it alongside emacs 27 causes issues. Fixes <https://bugs.gnu.org/43138>. * gnu/packages/emacs-xyz.scm (emacs-bugs-hunter)[propagated-inputs]: Remove. (emacs-erc-status-sidebar)[propagated-inputs]: Remove. (emacs-psc-ide)[propagated-inputs]: Remove emacs-seq. (emacs-biblio)[propagated-inputs]: Remove emacs-seq. (emacs-seq): Delete variable. (emacs-flycheck-haskell)[propagated-inputs]: Remove emacs-seq.
2020-09-04gnu: emacs-auctex: Configure executable paths.Arun Isaac
* gnu/packages/emacs-xyz.scm (emacs-auctex): Configure absolute paths to ghostscript and texlive executables. [inputs]: Add ghostscript.
2020-09-04gnu: Add emacs-org-edna.Morgan Smith
* gnu/packages/emacs-xyz.scm (emacs-org-edna): New variable. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-09-04gnu: txr: Update to 243.Guillaume Le Vaillant
* gnu/packages/lisp.scm (txr): Update to 243.
2020-09-04gnu: kdenlive: Add ffmpeg to input listPrafulla Giri
* gnu/packages/kde.scm (kdenlive): Add ffmpeg to inputs and wrap the final binary accordingly to have ffmpeg in it's PATH. [inputs]: Add ffmpeg. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04.guix-authorizations: Add planglois to the committers.Ludovic Courtès
* .guix-authorizations: Add planglois.
2020-09-04gnu: darktable: Add dependency on libavif, ocl-icd.Vinicius Monego
* gnu/packages/photo.scm (darktable)[inputs]: Add libavif, ocl-icd. [arguments]: Set LD_LIBRARY_PATH for OpenCL. [supported-systems]: Remove i686 which is not supported anymore. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04gnu: darktable: Update to 3.2.1.Vinicius Monego
* gnu/packages/photo.scm (darktable): Update to 3.2.1. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-09-04doc: Document 'file-system-label' and 'uuid'.Ludovic Courtès
* doc/guix.texi (File Systems): Document 'file-system-label' and 'uuid'.
2020-09-04doc: Syntax highlighting now handles @var within @lisp.Ludovic Courtès
* doc/build.scm (syntax-highlighted-html)[build](concatenate-pieces): Handle @var{name}.
2020-09-04doc: Balance parens in R Shiny example.Ludovic Courtès
* doc/guix.texi (Miscellaneous Services): Balance parens in R Shiny example.
2020-09-04gnu: php: Update to 7.4.10.Tobias Geerinckx-Rice
* gnu/packages/php.scm (php): Update to 7.4.10.
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