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2015-05-04gnu: samtools: Install libbam.a library.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Add phase "install-library" to install the libbam.a library.
2015-05-04gnu: samtools: Remove patch-makefile-curses phase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools)[arguments]: Remove patch-makefile-curses phase, use make-flags instead.
2015-05-04gnu: gcc-5.1: Add specific libvtv patch.Ludovic Courtès
* gnu/packages/patches/gcc-5.0-libvtv-runpath.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/gcc.scm (gcc-5.1)[source]: Use it.
2015-05-04guix package: Introduce 'evaluate-search-paths'.Ludovic Courtès
* guix/scripts/package.scm (evaluate-search-paths): New procedure, with most of the code formerly in 'search-path-environment-variables'. (search-path-environment-variables): Use it.
2015-05-04guix package: Move profile cleaning out of 'search-path-environment-variables'.Ludovic Courtès
* guix/scripts/package.scm (user-friendly-profile): New procedure. (search-path-environment-variables): Remove 'profile' local variable. (display-search-paths): Explicitly call 'user-friendly-profile' for the argument to 'search-path-environment-variables'. (guix-package)[process-query]: Likewise.
2015-05-04gnu: Add totem-pl-parser.David Hashe
* gnu/packages/gnome.scm (totem-pl-parser): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-05-04doc: Replace reference to profile.sh with sh-symlinkChristopher Allan Webber
* doc/guix.texi (The Store Monad): Replace reference to "profile.sh", which is not defined until the next node, with "sh-symlink", which is defined immediately above Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2015-05-03gnu: Add libe-book.Andreas Enge
* gnu/packages/libreoffice.scm (libe-book): New variable. Co-authored-by: John Darrington <jmd@gnu.org>
2015-05-03gnu: Add zeromq.Ricardo Wurmus
* gnu/packages/networking.scm (zeromq): New variable.
2015-05-03gnu: rename (gnu packages socat) to (gnu packages networking).Ricardo Wurmus
* gnu/packages/socat.scm: Rename this ... * gnu/packages/networking.scm: ... to this. * gnu-system.am (GNU_SYSTEM_MODULES): Change socat.scm to networking.scm.
2015-05-03gnu: subversion: Update to 1.8.13.Mark H Weaver
* gnu/packages/version-control.scm (subversion): Update to 1.8.13.
2015-05-03gnu: gnupg: Update to 2.1.3.Mark H Weaver
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.3.
2015-05-03gnu: Add dovecot.Mark H Weaver
* gnu/packages/mail.scm (dovecot): New variable.
2015-05-03gnu: acpica: Update to 20150410.Mark H Weaver
* gnu/packages/admin.scm (acpica): Update to 20150410.
2015-05-03gnu: wpa-supplicant: Update to 2.4.Mark H Weaver
* gnu/packages/admin.scm (wpa-supplicant): Update to 2.4.
2015-05-03gnu: parallel: Update to 20150422.Ludovic Courtès
* gnu/packages/parallel.scm (parallel): Update to 20150422.
2015-05-03gnu: help2man: Update to 1.46.6.Ludovic Courtès
* gnu/packages/man.scm (help2man): Update to 1.46.6.
2015-05-03gnu: dejagnu: Update to 1.5.3.Ludovic Courtès
* gnu/packages/dejagnu.scm (dejagnu): Update to 1.5.3.
2015-05-03gnu: Add libwpd.Andreas Enge
* gnu/packages/libreoffice.scm (libwpd): New variable.
2015-05-03gnu: Add librevenge.Andreas Enge
* gnu/packages/libreoffice.scm (librevenge): New variable. Co-authored-by: John Darrington <jmd@gnu.org>
2015-05-03gnu: cppunit: Explicitly link with libdl.Andreas Enge
* gnu/packages/check.scm (cppunit)[arguments]: Add #:make-flags.
2015-05-02guix: build: Add transitive source building.Eric Bavier
* guix/scripts/build.scm (%options, options->derivations): Add --sources option. * doc/guix.texi (Invoking guix build): Document --sources option. * tests/guix-build.sh: Add tests.
2015-05-02guix: packages: Add package-direct-sources and package-transitive-sources.Eric Bavier
* guix/tests.scm (dummy-origin): New syntax. * guix/packages.scm (package-direct-sources) (package-transitive-sources): New procedures. * tests/packages.scm ("package-direct-sources, no source") ("package-direct-sources, #f source") ("package-direct-sources, not input source", "package-direct-sources") ("package-transitive-sources"): Test them.
2015-05-03install: Add bash-completion to the packages.Ludovic Courtès
* gnu/system/install.scm (installation-os)[packages]: Add BASH-COMPLETION.
2015-05-02profiles: Store search paths in manifests.Ludovic Courtès
Discussed in <http://bugs.gnu.org/20255>. * guix/packages.scm (sexp->search-path-specification): New variable. * guix/profiles.scm (<manifest-entry>)[search-paths]: New field. (package->manifest-entry): Initialize it. (manifest->gexp): Match it. Wrap #$deps in (propagated-inputs ...). Emit (search-paths ...). Increment version. (find-package): New procedure. (sexp->manifest)[infer-search-paths]: New procedure. Use it to initialize the 'search-paths' field for versions 0 and 1. Add case for version 2. * guix/scripts/package.scm (search-path-environment-variables)[manifest-entry->package]: Remove. Use 'manifest-entry-search-paths' instead of 'manifest-entry->package' plus 'package-native-search-paths'. * tests/profiles.scm ("profile-manifest, search-paths"): New test.
2015-05-02Merge branch 'core-updates'Ludovic Courtès
2015-05-02hydra: Update Guix job set.Ludovic Courtès
* build-aux/hydra/guix.scm (tarball-package): Remove 'nix-checkout' parameter. Remove 'arguments', 'native-inputs', and 'location' fields. Adjust caller accordingly. (hydra-jobs): Remove 'nix-checkout'.
2015-05-02build-system/gnu: 'dist-package' preserves the package's native inputs.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package)[native-inputs]: Preserve P's native-inputs.
2015-05-02build-system/gnu: Adjust to removal of a "bin" output for Libtool.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package): Change libtool:bin input to just libtool.
2015-05-02gnu: gcj: Remove broken symlink and conflicting files.Ricardo Wurmus
* gnu/packages/gcc.scm (gcj)[arguments]: Add a build phase to remove a broken symlink and generic stump binaries.
2015-05-02gnu: mesa: Update to 10.5.4.Taylan Ulrich Bayırlı/Kammer
* gnu/packages/gl.scm (mesa): Update version to 10.5.4. Add libxvmc to inputs. Remove python, gettext, flex, and bison from native-inputs. Remove hack that was necessary to prevent rebuilding parts of the build system.
2015-05-02gnu: mesa: Add libva input.Taylan Ulrich Bayırlı/Kammer
There is a circular dependency between Mesa and libVA, so we use a libva-no-mesa package that builds libVA without GLX and EGL support, and use that for building Mesa. * gnu/packages/gl.scm (libva-for-mesa): New variable. (mesa): Add as input.
2015-05-01gnu: linux-libre: Update to 4.0.1.Mark H Weaver
* gnu/packages/linux.scm (linux-libre): Update to 4.0.1.
2015-05-01gnu: ebook: Drop circular inclusion of the module into itself.Andreas Enge
* gnu/packages/ebook.scm: Do not import (gnu packages ebook).
2015-05-01services: Add console-keymap service.Alex Kost
* gnu/services/base.scm (console-keymap-service): New procedure. * doc/guix.texi (Base Services): Document it. Co-authored-by: 宋文武 <iyzsong@gmail.com>
2015-05-01bash completion: Complete long options with no short variant.Ludovic Courtès
* etc/completion/bash/guix (_guix_complete_option): Change grep regexp to match options that don't have a short option name.
2015-05-01gnu: polkit-qt: Add $libdir to RUNPATH.Ludovic Courtès
* gnu/packages/polkit.scm (polkit-qt)[arguments]: Add #:configure-flags.
2015-05-01check-available-binaries: Use %HYDRA-SUPPORTED-SYSTEMS.Ludovic Courtès
* build-aux/check-available-binaries.scm: Use %HYDRA-SUPPORTED-SYSTEMS instead of %SUPPORTED-SYSTEMS.
2015-05-01gnu: mariadb: Remove now unneeded workaround.Ludovic Courtès
This has been redundant since 21e583d. * gnu/packages/databases.scm (mariadb)[arguments]: Remove LDFLAGS definition.
2015-05-01list-packages: Add status link only for systems supported on Hydra.Ludovic Courtès
* build-aux/list-packages.scm (package->sxml)[status]: Intersect (package-transitive-supported-systems package) with %HYDRA-SUPPORTED-SYSTEMS.
2015-05-01packages: Add '%hydra-supported-systems'.Ludovic Courtès
* build-aux/hydra/gnu-system.scm (%hydra-supported-systems): Remove. * guix/packages.scm (%hydra-supported-systems): New variable.
2015-05-01gnu: ganv: Set the RUNPATH of binaries to $libdir.Ludovic Courtès
* gnu/packages/gtk.scm (ganv)[arguments]: Add 'set-ldflags' phase.
2015-05-01Merge branch 'master' into core-updatesLudovic Courtès
2015-05-01serialization: Adjust the permissive UTF-8 decoder to Guile 2.0.12ish.Ludovic Courtès
* guix/serialization.scm (read-maybe-utf8-string): Use 'set-port-encoding!' and 'set-port-conversion-strategy!' instead of setting '%default-port-encoding' and '%default-port-conversion-strategy'. This accounts for Guile commit d574d96, which changes bytevector input ports to use ISO-8859-1.
2015-05-01substitute: Fix file descriptor leak in 'http-multiple-get'.Ludovic Courtès
In practice we would not leak much since we reconnect after ~100 requests (with nginx running on hydra.gnu.org.) * guix/scripts/substitute.scm (http-multiple-get): Call 'close-port' before 'connect'.
2015-05-01gnu: qt: Add patch for i686 build problem.Taylan Ulrich Bayırlı/Kammer
See <https://bugreports.qt.io/browse/QTBUG-45205>. * gnu/packages/patches/qt5-conflicting-typedefs.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qt): Add the patch.
2015-05-01Thank Joshua.Ludovic Courtès
2015-05-01download: Honor the 'http_proxy' and 'https_proxy' env. vars.Ludovic Courtès
Fixes <http://bugs.gnu.org/20402>. Reported by Joshua Randall <jcrandall@alum.mit.edu>. * guix/download.scm (url-fetch): Pass #:leaked-env-vars to 'gexp->derivation'.
2015-05-01derivations: Add #:leaked-env-vars parameter.Ludovic Courtès
Suggested by Joshua Randall <jcrandall@alum.mit.edu> in <http://bugs.gnu.org/20402>. * guix/derivations.scm (derivation): Add #:leaked-env-vars parameter. [user+system-env-vars]: Honor it. * guix/gexp.scm (gexp->derivation): Add #:leaked-env-vars and pass it to 'raw-derivation'. * doc/guix.texi (Derivations, G-Expressions): Adjust accordingly.
2015-05-01download: Simplify 'open-connection-for-uri' to support HTTP proxies.Ludovic Courtès
Partly fixes <http://bugs.gnu.org/20402>. Reported by Joshua Randall <jcrandall@alum.mit.edu>. * guix/build/download.scm (open-connection-for-uri): Rewrite to be a small wrapper around 'open-socket-for-uri'. This procedure was initially introduced in d14ecda to work around the lack of NSS modules during bootstrap but that has become unnecessary since 0621349, which introduced a bootstrap Guile that uses static NSS modules (from commit d3b5972.) On Guile >= 2.0.10, this allows the 'http_proxy' environment variable to be used.
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