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2017-11-08services: 'fold-service-types' includes (gnu services).Ludovic Courtès
* gnu/services.scm (all-service-modules): New procedure. (fold-service-types): Use it for the default MODULES value.
2017-11-08services: 'fold-service-types' honors its seed.Ludovic Courtès
* gnu/services.scm (fold-service-types): Use SEED instead of '().
2017-11-08ui: Define and honor '&error-location' and '&fix-hint' conditions.Ludovic Courtès
* guix/utils.scm (&error-location, &fix-hint): New condition types. * guix/ui.scm (report-load-error): Handle them. (call-with-error-handling): Honor '&error-location'.
2017-11-08ui: Introduce (guix i18n).Ludovic Courtès
* guix/ui.scm (G_, N_, _P, %gettext-domain, %package-text-domain): Move to... * guix/i18n.scm: ... here. New file.
2017-11-08gnu: service: Update comment.Hartmut Goebel
* gnu/services/base.scm (guix-activation): Update comment.
2017-11-08install: Use overlayfs instead of unionfs.Hartmut Goebel
I dediced to keep adding /tmp as tmpfs since I was not able to trigger bug while still using unionfs, so I could not verify whether this mount is still needed with overlayfs. Mapping /tmp to tmpfs does not harm, so we are on the save side. * gnu/system/install.scm (make-cow-store): Mount /gnu/store without additional read-only bind-mount, since in overlayfs the "lower" level is always read-only. Add work-dir required by overlayfs. No need to sleep anymore since now using the mount syscall. [unionfs]: Remove now unused function. (%installation-services): Update comment. (installation-os)[file-systems]: Update comment.
2017-11-08build: Use overlayfs instead of unionfs.Hartmut Goebel
Overlayfs is part of the kernel, while unionfs needs FUSE. This also reduces the size of the initrd by ca. 4.3% (487K). * gnu/build/linux-boot.scm (mount-root-file-system): Remove optional parameter "unionfs"; mount using overlayfs instead of unionfs; new directory layout requied by overlayfs; update documentation. [mark-as-not-killable]: Remove now unused function * gnu/system/linux-initrd.scm (file-system-packages): Remove now unused packages "unionfs-fuse/static" and thus unused related 'if'. (linux-modules): Replace "fuse" by "overlay".
2017-11-08gnu: miso: Use pypi-uri.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (miso)[source]: Use pypi-uri.
2017-11-08gnu: Add r-vcd.Ricardo Wurmus
* gnu/packages/cran.scm (r-vcd): New variable.
2017-11-08gnu: Add r-laeken.Ricardo Wurmus
* gnu/packages/cran.scm (r-laeken): New variable.
2017-11-08doc: Move paragraph about signature verification to the top.Ricardo Wurmus
* doc/contributing.texi (Submitting Patches): Remind contributors to verify cryptographic signatures at the very beginning.
2017-11-08gnu: fastcap: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/engineering.scm (fastcap)[native-inputs]: Replace texlive with texlive-tiny. [arguments]: Fix indentation; set HOME in "make-pdf" phase to avoid font errors with texlive-tiny.
2017-11-08gnu: librecad: Fix build.Ricardo Wurmus
* gnu/packages/engineering.scm (librecad)[arguments]: Add phase "patch-boost-error".
2017-11-08gnu: Add r-performanceanalytics.Ricardo Wurmus
* gnu/packages/cran.scm (r-performanceanalytics): New variable.
2017-11-08gnu: Add r-xts.Ricardo Wurmus
* gnu/packages/cran.scm (r-xts): New variable.
2017-11-08gnu: Remove "open source" from descriptions.Ricardo Wurmus
All software in Guix is Free Software. * gnu/packages/aidc.scm (libdmtx)[description]: Remove "open source" string. * gnu/packages/firmware.scm (seabios)[description]: Likewise. * gnu/packages/libupnp.scm (libupnp)[description]: Likewise. * gnu/packages/maths.scm (cubicle)[description]: Likewise. * gnu/packages/mingw.scm (mingw-w64)[description]: Likewise. * gnu/packages/game-development.scm (openmw)[description]: Likewise. [synopsis]: Remove "Free software".
2017-11-08gnu: pcb: Update to 4.0.2.Ricardo Wurmus
* gnu/packages/engineering.scm (pcb): Update to 4.0.2. [arguments]: Add build phase "fix-check-for-display".
2017-11-08gnu: time: Update license.Efraim Flashner
* gnu/packages/time.scm (time)[license]: Change to gpl3+.
2017-11-08gnu: time: Update to 1.8.Efraim Flashner
* gnu/packages/time.scm (time): Update to 1.8. [arguments]: Remove custom 'configure phase.
2017-11-07gnu: Add glusterfs.Ricardo Wurmus
* gnu/packages/file-systems.scm (glusterfs): New variable.
2017-11-07gnu: r-prabclus: Update description.Ricardo Wurmus
* gnu/packages/statistics.scm (r-prabclus)[description]: Fix grammar errors.
2017-11-07gnu: r-fdrtool: Update description.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fdrtool)[description]: Use "@dfn" syntax.
2017-11-07gnu: Add r-bbmle.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbmle): New variable.
2017-11-07gnu: Add r-rsofia.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsofia): New variable.
2017-11-07gnu: Add r-hitc.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hitc): New variable.
2017-11-07gnu: Add r-fithic.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-fithic): New variable.
2017-11-07gnu: Add r-sushi.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sushi): New variable.
2017-11-07gnu: Add r-vioplot.Ricardo Wurmus
* gnu/packages/cran.scm (r-vioplot): New variable.
2017-11-07gnu: Add r-sm.Ricardo Wurmus
* gnu/packages/cran.scm (r-sm): New variable.
2017-11-07gnu: Add r-gwascat.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gwascat): New variable.
2017-11-07gnu: Add r-gviz.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): New variable.
2017-11-07gnu: Add r-gqtlstats.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlstats): New variable.
2017-11-07gnu: Add r-hardyweinberg.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): New variable.
2017-11-07gnu: Add r-mice.Ricardo Wurmus
* gnu/packages/cran.scm (r-mice): New variable.
2017-11-07gnu: Add r-ldblock.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ldblock): New variable.
2017-11-07gnu: Add r-erma.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-erma): New variable.
2017-11-07gnu: Add r-homo-sapiens.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-homo-sapiens): New variable.
2017-11-07gnu: Add r-org-hs-eg-db.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): New variable.
2017-11-07gnu: Add r-snpstats.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-snpstats): New variable.
2017-11-07gnu: Add r-gqtlbase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gqtlbase): New variable.
2017-11-07gnu: Add r-gprofiler.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gprofiler): New variable.
2017-11-07gnu: Add r-ggbio.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio): New variable.
2017-11-07gnu: Add r-biovizbase.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biovizbase): New variable.
2017-11-07gnu: Add r-organismdbi.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-organismdbi): New variable.
2017-11-07gnu: Add r-ensembldb.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ensembldb): New variable.
2017-11-07gnu: Add r-annotationfilter.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-annotationfilter): New variable.
2017-11-07gnu: Add r-dirichletmultinomial.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-dirichletmultinomial): New variable.
2017-11-07gnu: Add r-complexheatmap.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-complexheatmap): New variable.
2017-11-07gnu: Add r-genomicfiles.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfiles): New variable.
2017-11-07gnu: bdftopcf: Update to 1.1.Marius Bakke
* gnu/packages/xorg.scm (bdftopcf): Update to 1.1. [native-inputs]: Change from LIBXFONT to LIBXFONT2.
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