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2019-03-13gnu: Add r-apcluster.Ricardo Wurmus
* gnu/packages/cran.scm (r-apcluster): New variable.
2019-03-13gnu: Add r-gmodels.Ricardo Wurmus
* gnu/packages/cran.scm (r-gmodels): New variable.
2019-03-13gnu: Add tetoolkit.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (tetoolkit): New variable.
2019-03-13gnu: Add r-irkernel.Ricardo Wurmus
* gnu/packages/cran.scm (r-irkernel): New variable.
2019-03-13gnu: Add r-irdisplay.Ricardo Wurmus
* gnu/packages/cran.scm (r-irdisplay): New variable.
2019-03-13gnu: Add r-repr.Ricardo Wurmus
* gnu/packages/cran.scm (r-repr): New variable.
2019-03-13gnu: Add r-pbdzmq.Ricardo Wurmus
* gnu/packages/cran.scm (r-pbdzmq): New variable.
2019-03-13gnu: Add r-illuminahumanmethylationepicmanifest.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminahumanmethylationepicmanifest): New variable.
2019-03-13gnu: Add r-lumi.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lumi): New variable.
2019-03-13gnu: Add r-methylumi.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-methylumi): New variable.
2019-03-13gnu: Add r-fdb-infiniummethylation-hg19.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New variable.
2019-03-13gnu: portaudio: Build position independent code and install more headers.Ricardo Wurmus
* gnu/packages/audio.scm (portaudio)[arguments]: Pass "--with-pic" and initialize libtool in new build phase "build-only-position-independent-code"; install extra header in new build phase "install-missing-headers".
2019-03-13gnu: Add r-minfi.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minfi): New variable.
2019-03-13gnu: Add r-bumphunter.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bumphunter): New variable.
2019-03-13gnu: Add r-siggenes.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-siggenes): New variable.
2019-03-13gnu: Add r-illuminaio.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-illuminaio): New variable.
2019-03-13gnu: Add r-geoquery.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geoquery): New variable.
2019-03-13gnu: Add r-scone.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scone): New variable.
2019-03-13gnu: Add r-scdd.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scdd): New variable.
2019-03-13gnu: Add r-noiseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-noiseq): New variable.
2019-03-13gnu: Add r-monocle.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-monocle): New variable.
2019-03-13gnu: Add r-mast.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mast): New variable.
2019-03-13gnu: Add r-icobra.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): New variable.
2019-03-13gnu: Add r-beanplot.Ricardo Wurmus
* gnu/packages/cran.scm (r-beanplot): New variable.
2019-03-13gnu: Add r-nor1mix.Ricardo Wurmus
* gnu/packages/cran.scm (r-nor1mix): New variable.
2019-03-13gnu: Add r-ggextra.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggextra): New variable.
2019-03-13gnu: Add r-colourpicker.Ricardo Wurmus
* gnu/packages/cran.scm (r-colourpicker): New variable.
2019-03-13gnu: Add r-shinyjs.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyjs): New variable.
2019-03-13gnu: Add r-shinybs.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinybs): New variable.
2019-03-13gnu: Add r-ihw.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ihw): New variable.
2019-03-13gnu: Add r-lpsymphony.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-lpsymphony): New variable.
2019-03-13gnu: Add r-ebseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebseq): New variable.
2019-03-13gnu: Add r-nbpseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-nbpseq): New variable.
2019-03-13gnu: wireshark: Update to 3.0.0.Nicolas Goaziou
* gnu/packages/networking.scm (wireshark): Update to 3.0.0.
2019-03-13gnu: python-py3status: Update to 3.16.Tomáš Čech
* gnu/packages/python-xyz.scm (python-py3status): Update to 3.16.
2019-03-13gnu: r-minpack-lm: Fix typo in description.Jack Hill
* gnu/packages/cran.scm (r-minpack-lm)[description]: Fix typo. Signed-off-by: Leo Famulari <leo@famulari.name>
2019-03-12gnu: rosegarden: Update to 18.12.Nicolas Goaziou
* gnu/packages/music.scm (rosegarden): Update to 18.12. [arguments]: Remove unused flag.
2019-03-12gnu: musescore: Update to 3.0.5.Nicolas Goaziou
* gnu/packages/music.scm (musescore): Update to 3.0.5.
2019-03-12describe: 'package-path-entries' no longer includes the "guix" entry.Ludovic Courtès
Fixes <https://bugs.gnu.org/34833> Reported by mikadoZero <mikadozero@yandex.com>. By returning the "guix" entry, we were then adding it to %PACKAGE-MODULE-PATH, causing the discovery code to scan the whole tree, including gnu/installer modules, which would in turn lead to warnings. Regression introduced in bfc9c339301ffe6dd15d156894dc27e05f6f081f. * guix/describe.scm (package-path-entries): Use 'current-channel-entries', not 'current-profile-entries'.
2019-03-12Revert "packages: 'package-input-rewriting' can take a promise."Ludovic Courtès
This reverts commit 7d2be1277b44de9d0528d9d3015443b40cb3b104, which turned out to be unhelpful for the problem at hand: https://lists.gnu.org/archive/html/guix-devel/2019-01/msg00486.html
2019-03-12gnu: guile-stis-parser: Override source file name.Ricardo Wurmus
* gnu/packages/guile-xyz.scm (guile-stis-parser)[source]: Provide file name for git checkout.
2019-03-12gnu: Add r-deds.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-deds): New variable.
2019-03-12gnu: Add r-zim.Ricardo Wurmus
* gnu/packages/cran.scm (r-zim): New variable.
2019-03-12gnu: Add r-penalized.Ricardo Wurmus
* gnu/packages/cran.scm (r-penalized): New variable.
2019-03-12gnu: Add r-nonnest2.Ricardo Wurmus
* gnu/packages/cran.scm (r-nonnest2): New variable.
2019-03-12gnu: Add r-lavaan.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): New variable.
2019-03-12gnu: Add r-pbivnorm.Ricardo Wurmus
* gnu/packages/cran.scm (r-pbivnorm): New variable.
2019-03-12gnu: Add r-msir.Ricardo Wurmus
* gnu/packages/cran.scm (r-msir): New variable.
2019-03-12gnu: Add r-moments.Ricardo Wurmus
* gnu/packages/cran.scm (r-moments): New variable.
2019-03-12gnu: Add r-minpack-lm.Ricardo Wurmus
* gnu/packages/cran.scm (r-minpack-lm): New variable.
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