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2023-04-29gnu: r-rliger: Strip jar timestamps.Ricardo Wurmus
* gnu/packages/cran.scm (r-rliger)[arguments]: Add phase 'strip-jar-timestamps; remove trailing #T; add ant-build-system modules. [source]: Simplify snippet. [native-inputs]: Add zip.
2023-04-29gnu: r-hpar: Avoid internet access.Ricardo Wurmus
ExperimentHub::createHubAccessors needs internet access. When R tests if the package can be loaded it runs zzz.R, which contains the call to createHubAccessors. We set the variable GUIX_BUILD to conditionally disable this call. * gnu/packages/bioconductor.scm (r-hpar)[arguments]: Add two build phases: 'set-HOME and 'avoid-internet-access.
2023-04-29gnu: r-coin: Delete file with bad encoding.Ricardo Wurmus
* gnu/packages/cran.scm (r-coin)[arguments]: Add phase 'remove-test-file-with-latin-encoding.
2023-04-29gnu: r-cplm: Fix build with R 4.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-cplm)[arguments]: Update headers to find definition for GET_SLOT.
2023-04-29gnu: r-phyloseq: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-phyloseq): Update to 1.44.0.
2023-04-29gnu: r-tximeta: Update to 1.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.18.0.
2023-04-29gnu: r-tricycle: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tricycle): Update to 1.8.0.
2023-04-29gnu: r-biscuiteer: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biscuiteer): Update to 1.14.0.
2023-04-29gnu: r-omnipathr: Update to 3.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omnipathr): Update to 3.8.0.
2023-04-29gnu: r-omicade4: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-omicade4): Update to 1.40.0.
2023-04-29gnu: r-dmrseq: Update to 1.20.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.20.0.
2023-04-29gnu: r-dada2: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dada2): Update to 1.28.0.
2023-04-29gnu: r-bsseq: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsseq): Update to 1.36.0.
2023-04-29gnu: r-biotmle: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotmle): Update to 1.24.0.
2023-04-29gnu: r-biotip: Update to 1.14.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biotip): Update to 1.14.0.
2023-04-29gnu: r-bioqc: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bioqc): Update to 1.28.0.
2023-04-29gnu: r-bionet: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionet): Update to 1.60.0.
2023-04-29gnu: r-bionero: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionero): Update to 1.8.0.
2023-04-29gnu: r-biomvcclass: Update to 1.68.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomvcclass): Update to 1.68.0.
2023-04-29gnu: r-mvcclass: Update to 1.74.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mvcclass): Update to 1.74.0.
2023-04-29gnu: r-biomformat: Update to 1.28.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomformat): Update to 1.28.0.
2023-04-29gnu: r-biodb: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.8.0.
2023-04-29gnu: r-biocdockermanager: Update to 1.11.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocdockermanager): Update to 1.11.0.
2023-04-29gnu: r-biocthis: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocthis): Update to 1.10.0.
2023-04-29gnu: r-basilisk: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk): Update to 1.12.0.
2023-04-29gnu: r-basilisk-utils: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-basilisk-utils): Update to 1.12.0.
2023-04-29gnu: r-dir-expiry: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dir-expiry): Update to 1.8.0.
2023-04-29gnu: r-genetclassifier: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genetclassifier): Update to 1.40.0.
2023-04-29gnu: r-minet: Update to 3.58.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-minet): Update to 3.58.0.
2023-04-29gnu: r-biobtreer: Update to 1.12.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biobtreer): Update to 1.12.0.
2023-04-29gnu: r-bgeedb: Update to 2.26.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.26.0.
2023-04-29gnu: r-bgeecall: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.16.0.
2023-04-29gnu: r-beclear: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beclear): Update to 2.16.0.
2023-04-29gnu: r-megadepth: Update to 1.9.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-megadepth): Update to 1.9.0.
2023-04-29gnu: r-ballgown: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ballgown): Update to 2.32.0.
2023-04-29gnu: r-guitar: Update to 2.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-guitar): Update to 2.16.0.
2023-04-29gnu: r-chromstar: Update to 1.26.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.26.0.
2023-04-29gnu: r-snpstats: Update to 1.50.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-snpstats): Update to 1.50.0.
2023-04-29gnu: r-snapcgh: Update to 1.70.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-snapcgh): Update to 1.70.0.
2023-04-29gnu: r-pathview: Update to 1.40.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-pathview): Update to 1.40.0.
2023-04-29gnu: r-ldblock: Update to 1.30.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.30.0. [propagated-inputs]: Remove r-ensdb-hsapiens-v75, r-ensembldb, r-genomeinfodb, r-genomicfiles, r-rsamtools, r-snpstats, and r-variantannotation; add r-rlang.
2023-04-29gnu: r-kegggraph: Update to 1.60.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-kegggraph): Update to 1.60.0.
2023-04-29gnu: r-gwascat: Update to 2.32.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gwascat): Update to 2.32.0.
2023-04-29gnu: r-gviz: Update to 1.44.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.44.0.
2023-04-29gnu: r-ggbio: Update to 1.48.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.48.0.
2023-04-29gnu: r-erma: Update to 1.16.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-erma): Update to 1.16.0.
2023-04-29gnu: r-catalyst: Update to 1.24.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.24.0.
2023-04-29gnu: r-msmstests: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msmstests): Update to 1.38.0.
2023-04-29gnu: r-msmseda: Update to 1.38.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msmseda): Update to 1.38.0.
2023-04-29gnu: r-biocio: Update to 1.10.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocio): Update to 1.10.0.
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