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2015-06-12gnu: Add Couger....* gnu/packages/bioinformatics.scm (couger): New variable. Ricardo Wurmus
2015-06-12gnu: Add randomjungle....* gnu/packages/machine-learning.scm (randomjungle): New variable. Ricardo Wurmus
2015-06-12gnu: Add python-libsvm....* gnu/packages/machine-learning.scm (python-libsvm): New variable. Ricardo Wurmus
2015-06-12gnu: Add libsvm....* gnu/packages/machine-learning.scm: New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it. Ricardo Wurmus
2015-06-12gnu: ngs-sdk: Update to version 1.1.1....* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1. Ricardo Wurmus
2015-06-11gnu: ghc: Patch runtime references to /bin/sh....* gnu/packages/haskell.scm (ghc)[arguments]: Rename 'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'. Patch source files that reference /bin/sh. Eric Bavier
2015-06-11build-system/haskell: install config for any package that creates it....A Cabal package is allowed to declare an "empty" library, in an otherwise executable-only package, for the purpose of allowing Cabal to use it as a dependency for other packages. See e.g. hspec-discover. * guix/build/haskell-build-system.scm (register): Unconditionally call setup script with "register", and install any config file generated. Eric Bavier
2015-06-11profiles: Process ghc conf files only once....A package may be listed in the manifest inputs multiple times. Avoid copying ghc *.conf files twice by deleting duplicates. * guix/profiles.scm (ghc-package-cache-file)[conf-files]: Delete duplicate manifest inputs before copying conf files. Eric Bavier
2015-06-11profiles: Search for ghc conf files only if package db exists....This avoids having 'find-files' report warnings about searching in non-existent directories. * guix/profiles.scm (ghc-package-cache-file)[conf-files]: Only search for *.conf files if the search directory exists. Eric Bavier
2015-06-12Revert "gnu: openssl: Update to 1.0.2b."...This reverts commit 4f467e33de0b64b1afd935d14ec6a4839e03bdfc. Mark H Weaver
2015-06-12gnu: openssl: Update to 1.0.2b....* gnu/packages/openssl.scm (openssl): Update to 1.0.2b. Mark H Weaver
2015-06-11tests: Avoid sequence of zero expressions....* tests/records.scm ("define-record-type* with let* behavior"): Add missing body for clause. Ludovic Courtès
2015-06-11records: Remove unnecessary 'begin'....* guix/records.scm (define-record-type*): Remove unnecessary 'begin'. Ludovic Courtès
2015-06-11tests: Write the random seed to the error port....* guix/tests.scm (random-seed): New procedure. (%seed): Use it, and write the random seed to the error port. Ludovic Courtès
2015-06-11gnu: guix: Update snapshot....* gnu/packages/package-management.scm (guix-devel): Update to a43b55f. [source]: Add 'file-name' field. [native-inputs]: Add HELP2MAN. Ludovic Courtès
2015-06-11packages: Make 'location' field innate....* guix/packages.scm (<package>)[location]: Add 'innate' property. * guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and 'location' field. * gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field. * gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final): Likewise. * gnu/packages/cross-base.scm (cross): Likewise. * gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise. * gnu/packages/make-bootstrap.scm (tarball-package): Likewise. * gnu/packages/maths.scm (petsc-complex): Likewise. Ludovic Courtès
2015-06-11records: Add support for 'innate' fields....* guix/records.scm (make-syntactic-constructor): Add #:innate parameter. [record-inheritance]: Honor it. [innate-field?]: New procedure. (define-record-type*)[innate-field?]: New procedure. Pass #:innate to 'make-syntactic-constructor'. * tests/records.scm ("define-record-type* & inherit & innate", "define-record-type* & thunked & innate"): New tests. Ludovic Courtès
2015-06-11records: "options" → "properties"....* guix/records.scm (define-record-type*): Change "options" to "properties". Ludovic Courtès
2015-06-11records: Factorize field property predicates....* guix/records.scm (define-field-property-predicate): New macro. (define-record-type*)[thunked-field?, delayed-field?]: Use it. Ludovic Courtès
2015-06-11records: Separate default-value handling....* guix/records.scm (make-syntactic-constructor)[default-values]: New variable. [field-default-value]: New procedure. Use them. Ludovic Courtès
2015-06-11records: Replace 'eval-when' with a proper 'define-syntax'....* guix/records.scm (make-syntactic-constructor): Remove enclosing 'eval-when'. Turn into a 'syntax-rules' macro. Ludovic Courtès
2015-06-11gnu: gnupg: Update to 2.1.5....* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5. Mark H Weaver
2015-06-11gnu: Add librest....* gnu/packages/gnome.scm (librest): New variable. 宋文武
2015-06-11gnu: inetutils: Update to 1.9.4....* gnu/packages/admin.scm (inetutils): Update to 1.9.4. Mark H Weaver
2015-06-11guix build: Allow directories to be passed to --with-source....* guix/scripts/build.scm (package-with-source)[tarball-base-name]: Gracefully handle file names that lack an extension. Pass #:recursive? #t to 'download-to-store'. * guix/download.scm (download-to-store): Add #:recursive? parameter and pass it to 'add-to-store'. * doc/guix.texi (Invoking guix build): Add an example of --with-source with a directory. Ludovic Courtès
2015-06-11environment: Connect to the store after the command line has been parsed....* guix/scripts/environment.scm (guix-environment): Call 'parse-command-line' outside of 'with-store'. This allows things like --help to run even if the daemon is not running. Ludovic Courtès
2015-06-10build: Build man pages after the corresponding code....* doc.am (doc/guix.1): Remove extraneous $(top_builddir)/. (doc/guix-daemon.1): Fix dependency. (doc/guix-$(1).1): Remove extraneous $(top_builddir)/. Depend on the .go files instead of the .scm file. Add dependency on scripts/guix. Ludovic Courtès
2015-06-10daemon: Internationalize guix-daemon....* nix/nix-daemon/guix-daemon.cc (n_, _): New macros. (guix_textdomain): New variable. (doc): Use 'n_'. (options): Likewise, and lowercase messages. (argp): Add initializer for 'argp_domain' field. (parse_opt): Use '_' for messages. (main): Likewise, and add calls to 'setlocale', 'bindtextdomain', and 'textdomain'. * daemon.am (guix_daemon_CPPFLAGS): Add -DLOCALEDIR. * po/guix/Makevars (XGETTEXT_OPTIONS): Remove '--language' option. Add '--keyword=n_'. * po/guix/POTFILES.in: Add guix-daemon.cc. Ludovic Courtès
2015-06-10gnu: qemu: Add fix for CVE-2015-3209....* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/qemu.scm (qemu): Add patch. Mark H Weaver
2015-06-10gnu: cups: Update to 2.0.3....* gnu/packages/cups.scm (cups): Update to 2.0.3. Mark H Weaver
2015-06-10gnu: linux-libre: Update to 4.0.5....* gnu/packages/linux.scm (linux-libre): Update to 4.0.5. Mark H Weaver
2015-06-10guix-register: Use C++11 range 'for' loop instead of 'foreach' macro....* nix/guix-register/guix-register.cc (register_validity): Use C++11 range 'for' loop instead of 'foreach'. Ludovic Courtès
2015-06-10guix-register: Perform deduplication even when --prefix is passed....Fixes <http://bugs.gnu.org/19044>. * nix/guix-register/guix-register.cc (register_validity): Change the (optimize && prefix.empty ()) condition to just (optimize). Change settings.nixStore around the loop. Prepend PREFIX to the argument passed to 'optimisePath'. * tests/guix-register.sh: Use 'guix-register -p' with duplicate files, and make sure they are deduplicated on the target. Adjust existing tests. Ludovic Courtès
2015-06-10tests: Make the daemon socket explicit in guix-register test....* tests/guix-register.sh: Define GUIX_DAEMON_SOCKET. Pass it explicitly to 'open-connection'. Ludovic Courtès
2015-06-10guix system: init: Overwrite the items in the target store....Fixes <http://bugs.gnu.org/20722>. Reported by Eric Bavier <ericbavier@openmailbox.org>. * guix/scripts/system.scm (copy-item): Check whether DEST exists and remove it if it does. Ludovic Courtès
2015-06-10install: Really overwrite TARGET/var/guix/profiles/system-1-link....* gnu/build/install.scm (populate-root-file-system): Delete system-1-link under TARGET, not under /. Use 'catch' and check for EEXIST instead of (false-if-exception (delete-file ...)). Ludovic Courtès
2015-06-10ui: Replace the global 'symlink' binding....* guix/ui.scm (symlink): Set! the global symlink. Ludovic Courtès
2015-06-10doc: Add 'help2man' to HACKING....* HACKING: Mention 'help2man'. Alex Kost
2015-06-09gnu: mysql: Update to 5.6.25....* gnu/packages/databases.scm (mysql): Update to 5.6.25. [source]: Use 'version-major+minor'. [build-system]: Change to cmake-build-system. Adjust arguments accordingly. [inputs]: Add libaio. Remove procps. Move perl to 'native-inputs'. 宋文武
2015-06-09import: hackage: Refactor parsing code and add new options....* guix/import/cabal.scm: New file. * guix/import/hackage.scm: Update to use the new Cabal parsing module. * tests/hackage.scm: Update tests. * guix/scripts/import/hackage.scm: Add new '--cabal-environment' and '--stdin' options. * doc/guix.texi: ... and document them. * Makefile.am (MODULES): Add 'guix/import/cabal.scm', 'guix/import/hackage.scm' and 'guix/scripts/import/hackage.scm'. (SCM_TESTS): Add 'tests/hackage.scm'. Federico Beffa
2015-06-08gnu: Add proof-general....* gnu/packages/ocaml.scm (proof-general): New variable. Mark H Weaver
2015-06-08doc: Suggest unpacking the binary tarball in /tmp....Suggested by Thomas Schwinge <thomas@codesourcery.com> and others. * doc/guix.texi (Binary Installation): Suggest unpacking in /tmp rather than /. Ludovic Courtès
2015-06-08install: Omit /root from the binary tarball....Suggested by Thomas Schwinge <thomas@codesourcery.com>. * gnu/system/install.scm (self-contained-tarball): Remove "/root/.guix-profile" from the 'tar' arguments. * doc/guix.texi (Binary Installation): Add a step to create ~root/.guix-profile. Ludovic Courtès
2015-06-08monads: Allow n-ary '>>=' expressions....Suggested by Federico Beffa <beffa@fbengineering.ch>. * guix/monads.scm (bind-syntax): New macro. (with-monad): Use it instead of 'identifier-syntax'. * tests/monads.scm (">>= with more than two arguments"): New test. * doc/guix.texi (The Store Monad): Explain that there can be several MPROC. Add an example. Ludovic Courtès
2015-06-08gnu: youtube-dl: Update to 2015.06.04.1....* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1. Mark H Weaver
2015-06-08gnu: evince: Update to 3.16.1, add more inputs....* gnu/packages/gnome.scm (evince): Update to 3.16.1. [inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret. Co-authored-by: David Hashe <david.hashe@dhashe.com> 宋文武
2015-06-08gnu: geoclue: Update to 2.2.0....* gnu/packages/gnome.scm (geoclue): Update to 2.2.0. 宋文武
2015-06-08doc emacs: Improve documentation on initial setup....Reported by ngz on #guix. * doc/emacs.texi (Emacs Initial Setup): Describe how to configure "guix.el" in the case of binary installation and when Guix is not installed. Alex Kost
2015-06-08emacs: Add shell completions for "guix" command....Suggested by Ludovic Courtès <ludo@gnu.org>. * emacs/guix-pcomplete.el: New file. * emacs.am (ELFILES): Add it. * doc/emacs.texi (Emacs Completions): New node. Alex Kost
2015-06-08emacs: Add "memoization" code....* emacs/guix-utils.el (guix-memoize): New function. (guix-memoized-defun): New macro. Alex Kost