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2016-11-26gnu: Add proteinortho.Ben Woodcroft
* gnu/packages/bioinformatics.scm (proteinortho): New variable.
2016-11-26gnu: Add python-polib.Julien Lepiller
* gnu/packages/python.scm (python-polib, python2-polib): New variables. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2016-11-26gnu: Whitespace changesJohn Darrington
* gnu/services/kerberos.scm: Fold lines to 80 character limit.
2016-11-26mailmap: Associate all commits by ng0 with ng0.ng0
Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-26gnu: imagemagick: Update to 6.9.6-6 [fixes CVE-2016-9556].Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.6-6.
2016-11-26doc: mysql-configuration: Fix typo.宋文武
* doc/guix.texi (Database Services): Fix typo of 'mysql-configuration'.
2016-11-26services: Add opensmtpd service.宋文武
* gnu/services/mail.scm (<opensmtpd-configuration>): New record type. (%default-opensmtpd-config-file, %opensmtpd-accounts): New variables. (opensmtpd-shepherd-service, opensmtpd-activation): New procedures. (opensmtpd-service-type): New variable. * doc/guix.texi (Mail Services): Document it.
2016-11-25gnu: Add missing module import to (gnu packages ldc).Leo Famulari
This is a followup to commit e44b511298590ecc87c2c85d1cbc043a638dd1e0. * gnu/packages/ldc.scm: Import (gnu packages python).
2016-11-25gnu: ldc: Update to 0.17.2.Danny Milosavljevic
* gnu/packages/ldc.scm (ldc): Update to 0.17.2. * gnu/packages/patches/ldc-disable-tests.patch: Fix timezone file name. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2016-11-25offload: Drop 'remote-pipe'.Ludovic Courtès
* guix/scripts/offload.scm (remote-pipe): Remove. (machine-load): Use 'open-remote-pipe*' instead of 'remote-pipe'.
2016-11-25offload: Rewrite to make direct RPCs to the remote daemon.Ludovic Courtès
* guix/scripts/offload.scm (<build-machine>)[daemon-socket]: New field. (connect-to-remote-daemon): New procedure. (%gc-root-file, register-gc-root, remove-gc-roots, offload): Remove. (transfer-and-offload): Rewrite using 'connect-to-remote-daemon' and RPCs over SSH. (store-import-channel, store-export-channel): New procedures. (send-files, retrieve-files): Rewrite using these.
2016-11-25offload: Remove 'with-nar-error-handling' macro.Ludovic Courtès
* guix/scripts/offload.scm (with-nar-error-handling): Remove. (guix-offload): Use 'with-error-handling' instead.
2016-11-25store: 'open-connection' can taken an open port.Ludovic Courtès
* guix/store.scm (open-unix-domain-socket): New procedure. (open-connection): Add #:port parameter and honor it.
2016-11-25offload: Reuse SSH session during 'transfer-and-offload'.Ludovic Courtès
* guix/scripts/offload.scm (remote-pipe): Replace 'machine' parameter with 'session'. Remove 'open-ssh-session' call. (register-gc-root): Replace 'machine' with 'session'. Use ' session-get' instead of 'build-machine-name'. (remove-gc-roots, offload, send-files, retrieve-files): Likewise. (transfer-and-offload): Add 'open-ssh-session' call. Handle 'offload' errors here. (machine-load): Add call to 'open-ssh-session'.
2016-11-25offload: Use Guile-SSH instead of GNU lsh.Ludovic Courtès
* guix/scripts/offload.scm (<build-machine>)[ssh-options]: Remove. [host-key, host-key-type]: New fields. (%lsh-command, %lshg-command, user-lsh-private-key): Remove. (user-openssh-private-key, private-key-from-file*): New procedures. (host-key->type+key, open-ssh-session): New procedures. (remote-pipe): Remove 'mode' parameter. Rewrite in terms of 'open-ssh-session' etc. Update users. (send-files)[missing-files]: Rewrite using the bidirectional channel port. Remove call to 'call-with-compressed-output-port'. (retrieve-files): Remove call to 'call-with-decompressed-port'. (machine-load): Remove exit status logic. * doc/guix.texi (Requirements): Mention Guile-SSH. (Daemon Offload Setup): Document 'host-key' and 'private-key'. Show the default value on each @item line. * m4/guix.m4 (GUIX_CHECK_GUILE_SSH): New macro. * config-daemon.ac: Use 'GUIX_CHECK_GUILE_SSH'. Set 'HAVE_DAEMON_OFFLOAD_HOOK' as a function of that.
2016-11-25gnu: guile-ssh: Update to 0.10.2.Ludovic Courtès
* gnu/packages/ssh.scm (guile-ssh): Update to 0.10.2. [home-page]: Update. [source]: Use the 'url-fetch' method and a GitHub generated tarball. [arguments] <autoreconf>: Remove now unneeded 'chmod' call.
2016-11-25gnu: hydrogen: Update to 0.9.7.Ricardo Wurmus
* gnu/packages/music.scm (hydrogen): Update to 0.9.7.
2016-11-25gnu: btrfs-progs: Update to 4.8.4.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.4.
2016-11-25gnu: lz4: Update to 1.7.4.2.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (lz4): Update to 1.7.4.2.
2016-11-25gnu: hplip: Update to 3.16.11.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (hplip): Update to 3.16.11.
2016-11-25gnu: qtractor: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/music.scm (qtractor): Update to 0.8.0.
2016-11-25gnu: qemu: Install all required info files.Alex Kost
* gnu/packages/qemu.scm (qemu)[arguments]: Adjust 'install-info' phase to find all info files (including "*.info-N").
2016-11-25gnu: Add kicad-library.Theodoros Foradis
* gnu/packages/engineering.scm (kicad-library): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25gnu: Add kicad.Theodoros Foradis
* gnu/packages/engineering.scm (kicad): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25gnu: Add python2-wxpython.Theodoros Foradis
* gnu/packages/wxwidgets.scm (python2-wxpython): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25gnu: Add wxwidgets-gtk2.Theodoros Foradis
* gnu/packages/wxwidgets.scm (wxwidgets-gtk2): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2016-11-25gnu: nginx: Update to 1.11.6.Leo Famulari
* gnu/packages/web.scm (nginx): Update to 1.11.6. [arguments]: Remove the obsolete option --with-ipv6 from #:configure-flags.
2016-11-25gnu: miniupnpc: Improve synopsis and description.Tobias Geerinckx-Rice
* gnu/packages/upnp.scm (miniupnp)[synopsis, description]: Edit, fix typos, add some relevant (search) terms from the home page, and expand acronyms.
2016-11-25gnu: miniupnpc: Use the correct ‘upnpc’ in ‘external-ip’.Tobias Geerinckx-Rice
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Add ‘qualify-paths’ phase.
2016-11-25gnu: miniupnpc: Use ‘modify-phases’ syntax.Tobias Geerinckx-Rice
* gnu/packages/upnp.scm (miniupnpc)[arguments]: Use ‘modify-phases’.
2016-11-25gnu: miniupnpc: Update to 2.0.Tobias Geerinckx-Rice
* gnu/packages/upnp.scm (miniupnpc): Update to 2.0.
2016-11-25gnu: vim: Update to 8.0.0101.Tobias Geerinckx-Rice
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0101.
2016-11-24doc: Fix typos in "Kerberos Services".Ludovic Courtès
* doc/guix.texi (Kerberos Services): Fix typos.
2016-11-24doc: Document encrypted root partitions.Ludovic Courtès
This is a followup to f7f292d359e0eb77617f4ecf6b3164f868ec1784. * doc/guix.texi (Preparing for Installation): Give commands for encrypted root installation. (Proceeding with the Installation): Add item about mapped devices. (File Systems): Mention that 'dependencies' can list <mapped-device> objects. * gnu/system/examples/desktop.tmpl (mapped-devices): New field. (file-systems): Add 'dependencies' field.
2016-11-24doc: Document 'wpa-supplicant-service-type'.Ludovic Courtès
Reported by Chris Marusich <cmmarusich@gmail.com>. * doc/guix.texi (Networking Services): Remove 'wpa-supplicant-service' procedure, which doesn't exist, and document 'wpa-supplicant-service-type'.
2016-11-24services: network-manager: Depend on 'wpa-supplicant'.Ludovic Courtès
Suggested by Chris Marusich <cmmarusich@gmail.com>. * gnu/services/networking.scm (network-manager-shepherd-service) [requirement]: Add 'wpa-supplicant'.
2016-11-24services: network-manager: Install polkit actions.Ludovic Courtès
Reported by Chris Marusich <cmmarusich@gmail.com> at <https://lists.gnu.org/archive/html/help-guix/2016-11/msg00038.html>. * gnu/services/networking.scm (network-manager-service-type)[extensions]: Add POLKIT-SERVICE-TYPE.
2016-11-24services: Move polkit to (gnu services dbus).Ludovic Courtès
* gnu/services/desktop.scm (<polkit-configuration>, %polkit-accounts) (%polkit-pam-services, polkit-directory, polkit-etc-files) (polkit-setuid-programs, polkit-service-type, polkit-service): Move to... * gnu/services/dbus.scm: ... here.
2016-11-24gnu: hdf5: Build the C++ interface.Ludovic Courtès
* gnu/packages/maths.scm (hdf5)[arguments]: Add #:configure-flags.
2016-11-24gnu: vim: Update to 8.0.0096.Tobias Geerinckx-Rice
* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0096.
2016-11-24Add system start-up files for "guix publish".Hartmut Goebel
* .gitignore: add etc/guix-publish.conf and /etc/guix-publish.service. * etc/guix-publish.conf.in: New file. * etc/guix-publish.service.in: New file. * nix/local.mk (etc/guix-%.service, etc/guix-%.conf): Generalized former build-rules for by using patterns. (nodist_systemdservice_DATA): Add etc/guix-publish.service, update comment. (nodist_upstartjob_DATA): Add etc/guix-publish.conf, update comment. * doc/guix.texi (Invoking guix publish): Add description for enabling "guix publish" on host distros using the new files.
2016-11-24doc: Symlink daemon start-up files.Hartmut Goebel
This patch ensures that always the current profile's daemon will be used. The .service file contains the path to the guix-daemon within the store. Thus when copying the file, it will point to the very version of guix-daemon used at the time of copying – even after system upgrade or when this version has been garbage collected from the store. * doc/guix.texi (Binary Installation): Change example code for installing the systemd and Upstart files to use symbolic links instead of copying the files.
2016-11-24gnu: ir: Use archived tarball and home page.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (ir)[source]: Use a list of archive mirrors. [home-page]: Link to an Internet Archive snapshot.
2016-11-24gnu: ir: Use ‘modify-phases’ syntax.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (ir)[arguments]: Use ‘modify-phases’.
2016-11-23tests: Remove 'GUIX_LOCPATH' hack that had been added for glibc@2.23.Ludovic Courtès
* gnu/tests/base.scm (run-basic-test)[test]("locale"): Remove 'GUIX_LOCPATH' hack, which is no longer needed since commit 9f58fe3d1c32e3f0ced065e286532a10cad1b5e3.
2016-11-23install: Enable "cryptodisk" handling in GRUB.Ludovic Courtès
This allows 'grub-install' to do the right thing when / or /boot is a LUKS-encrypted partition. Fixes <http://bugs.gnu.org/21843>. * gnu/build/install.scm (install-grub): Add 'setenv' to set 'GRUB_ENABLE_CRYPTODISK'. (wait-for-screen-text): New test. * gnu/tests/base.scm (run-basic-test): Add #:initialization parameter and honor it. * gnu/tests/install.scm (%encrypted-root-os)[kernel-arguments]: Remove. (%encrypted-root-installation-script): Pass '--uuid' to 'cryptsetup luksFormat'. Remove 'sed' invocation. (enter-luks-passphrase): New procedure. (%test-encrypted-os)[value]: Pass #:initialization to 'run-basic-test'.
2016-11-23mapped-devices: Use 'cryptsetup-static' in 'luks-device-mapping'.Ludovic Courtès
* gnu/system/mapped-devices.scm (open-luks-device): Use CRYPTSETUP-STATIC instead of CRYPTSETUP. Use 'file-append'. (close-luks-device): Likewise.
2016-11-23marionette: Add 'marionette-screen-text' using OCR.Ludovic Courtès
* gnu/build/marionette.scm (marionette-screen-text): New procedure. * gnu/tests/base.scm (run-basic-test)["screen text"]: New test.
2016-11-23marionette: Delay synchronization with the host's REPL.Ludovic Courtès
* gnu/build/marionette.scm (<marionette>)[marionette-repl]: Rename to... [%marionette-repl]: ... this. (marionette-repl): New macro. (make-marionette): Wrap last 'read' call into 'delay', making the last argument to 'marionette' a promise of a port. (marionette-eval): Use 'force' in 'match' clause.
2016-11-23gnu: python-passlib: Update to 1.7.0.Leo Famulari
* gnu/packages/python.scm (python-passlib, python2-passlib): Update to 1.7.0.
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