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2023-10-17ui: Handle EPIPE errors when displaying Guix version....Fixes <https://issues.guix.gnu.org/66254>. Reported by Clément Lassieur <clement@lassieur.org>. * guix/ui.scm (show-version-and-exit): Handle EPIPE errors when displaying version. Simon Tournier
2023-10-17gnu: Add r-metacell....* gnu/packages/bioinformatics.scm (r-metacell): New variable. Afkhami, Navid
2023-10-17gnu: Add r-tgutil....* gnu/packages/statistics.scm (r-tgutil): New variable. Afkhami, Navid
2023-10-17gnu: r-tgstat: Update to 2.3.24....* gnu/packages/statistics.scm (r-tgstat): Delete variable. * gnu/packages/cran.scm (r-tgstat): Add updated variable here. [native-inputs]: Add r-knitr. [propagated-inputs]: Remove r-rcpp. [arguments]: Remove fix-isnan phase. Afkhami, Navid
2023-10-17gnu: r-tgconfig: Update to 0.1.2-1.15cf199....* gnu/packages/statistics.scm (r-tgconfig): Update to 0.1.2-1.15cf199. [source]: Fetch from github. [properties]: Add field. [home-page]: Use new URL. [description]: Expand. [license]: Use GPLv3 or later. Afkhami, Navid
2023-10-17gnu: r-svglite: Update to 2.1.2....* gnu/packages/statistics.scm (r-svglite): Update to 2.1.2. [properties]: Add field. [home-page]: Do not use repository URL. Afkhami, Navid
2023-10-17gnu: singularity: Do not override PATH....* gnu/packages/linux.scm (singularity)[arguments]: Prepend coreutils, but don't make it impossible to pick up other tools. Ricardo Wurmus
2023-10-17gnu: singularity: Modernize package definition....* gnu/packages/linux.scm (singularity)[source]: Remove trailing #t from snippet. [arguments]: Use G-expressions; remove trailing #t from build phases. [inputs]: Drop labels; add coreutils. Ricardo Wurmus
2023-10-17gnu: guix-build-coordinator: Update to 0-90.3446355....* gnu/packages/package-management.scm (guix-build-coordinator): Update to 0-90.3446355. Christopher Baines
2023-10-17gnu: mympd: Update to 12.1.0....* gnu/packages/mpd.scm (mympd): Update to 12.1.0. Signed-off-by: Christopher Baines <mail@cbaines.net> Bruno Victal
2023-10-17gnu: nomad-optimizer: Update to 4.3.1....* gnu/packages/maths.scm (nomad-optimizer): Update to 4.3.1. [native-inputs]: Remove python-wrapper and python-cython. Add openmpi. [arguments]: Use G-expressions. Remove #:imported-modules and #:modules. <#:configure-flags>: Remove -DBUILD_INTERFACE_PYTHON=ON. <#:phases>: Remove 'fix-sources-for-build' phase. Rename 'fix-sources-for-tests' phase to 'fix-tests' and update it. Add 'mpi-setup' phase. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: irssi: Update to 1.4.5....* gnu/packages/irc.scm (irssi): Update to 1.4.5. Signed-off-by: Christopher Baines <mail@cbaines.net> André Batista
2023-10-17gnu: mmg: Update to 5.7.2....* gnu/packages/graphics.scm (mmg): Update to 5.7.2. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: python-trimesh: Update to 3.23.5....* gnu/packages/python-science.scm (python-trimesh): Update to 3.23.5. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: python-pyvista: Update to 0.42.3....* gnu/packages/python-science.scm (python-pyvista): Update to 0.42.3. Signed-off-by: Christopher Baines <mail@cbaines.net> Paul A. Patience
2023-10-17gnu: crypto++: Add tunable property....* gnu/packages/crypto.scm (crypto++): Set tunable? property to true. Signed-off-by: Christopher Baines <mail@cbaines.net> Jean-Pierre De Jesus DIAZ
2023-10-17gnu: crypto++: Update to 8.8.0....* gnu/packages/crypto.scm (crypto++): Update to 8.8.0. [arguments]: Update to new style. Remove .so symbolic link installation as the project does it now. Fix cross-compilation for GNU/Linux and MinGW targets. Signed-off-by: Christopher Baines <mail@cbaines.net> Jean-Pierre De Jesus DIAZ
2023-10-17gnu: valeronoi: Reformat with guix style....* gnu/packages/engineering.scm (valeronoi): Process package with guix style. Efraim Flashner
2023-10-17gnu: valeronoi: Unbundle catch2 header....* gnu/packages/engineering.scm (valeroni)[source]: Add snippet to remove bundled header. [native-inputs]: Add catch2. Efraim Flashner
2023-10-17gnu: valeronoi: Update to 0.2.0....* gnu/packages/engineering.scm valeronoi: Update to 0.2.0. [inputs]: Remove qtbase-5 and qtsvg-5; add qtbase and qtsvg. Efraim Flashner
2023-10-16gnu: Add guile-hoot....* gnu/packages/guile-xyz.scm (guile-hoot): New variable. David Thompson
2023-10-16gnu: libcamera: Disable log_process test on aarch64....* gnu/packages/networking.scm (libcamera) [arguments] [aarch64]: Add disable-problematic-tests phase. Maxim Cournoyer
2023-10-16gnu: maliit-framework: Disable two mimpluginmanager tests....* gnu/packages/freedesktop.scm (maliit-framework) [arguments]: Override the check phase to disable the ft_mimpluginmanager and ut_mimpluginmanager tests. Maxim Cournoyer
2023-10-16gnu: qtwayland-5: Disable tst_surface test on aarch64-linux....* gnu/packages/qt.scm (qtwayland-5) [arguments] [target-aarch64?]: Disable the tst_surface test. Maxim Cournoyer
2023-10-16gnu: qtdeclarative: Add a debug output....* gnu/packages/qt.scm (qtdeclarative) [outputs]: New field. Series-version: 3 Series-to: 65922@debbugs.gnu.org Series-prefix: qt-team Cover-letter: Avoid capturing python in qtbase, reinstate tests Thes series removes Python from the closure of qtbase, both for versions 5.15 and 6.5. It also reinstate a few tests that was made possible thanks to discussions with upstream following reported the issues. END Maxim Cournoyer
2023-10-16gnu: qtbase: Disable problematic tests on powerpc64le....* gnu/packages/qt.scm (qtbase) [arguments] [powerpc64le]: Disable the tst_qpainter, tst_qprocess and tst_qsqlthread tests in the check phase. Series-changes: 3 - New commit Maxim Cournoyer
2023-10-16gnu: qtbase: Reinstate date related tests....* gnu/packages/qt.scm (qtbase) [native-inputs]: Add tzdata-for-tests. [arguments]: Set the TZDIR and TZ environment variables, and reinstate the tst_qdate, tst_qtimezone and tst_qdatetime tests in the check phase. (qtbase-5) [source]: Replace qtbase-use-TZDIR.patch with qtbase-5-use-TZDIR.patch. * gnu/packages/patches/qtbase-use-TZDIR.patch: Refresh patch with upstream version, and preserve the old one for qtbase@5 as... * gnu/packages/patches/qtbase-5-use-TZDIR.patch: ... this. * gnu/local.mk (dist_patch_DATA): Register new patch. Series-changes: 2 - Use old TZDIR patch for qtbase@5 (the new one doesn't apply) Maxim Cournoyer
2023-10-16gnu: qtbase: Add $TZDIR to native search paths....* gnu/packages/qt.scm (qtbase) [native-search-paths]: Add $TZDIR. Maxim Cournoyer
2023-10-16gnu: qtbase: Do not capture Python (again)....Fixes <https://issues.guix.gnu.org/65457>. * gnu/packages/qt.scm (qtbase-5) [arguments]: Add #:disallowed-references argument to guard against the problem reoccurring in the future. Add do-not-capture-python phase. (qtbase) [arguments]: Update do-not-capture-python phase. Maxim Cournoyer
2023-10-16gnu: git-lfs: Patch /bin/sh references....* gnu/packages/version-control.scm (git-lfs) [arguments]: Add patch-/bin/sh phase. Change-Id: I2d455e683e4f6e30cd32f5b1fdaccac71616826c Reviewed-by: Ludovic Courtès <ludo@gnu.org> Maxim Cournoyer
2023-10-16gnu: Add xsv....* gnu/packages/crates-io.scm (xsv): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Wilko Meyer
2023-10-16gnu: Add rust-csv-index-0.1....* gnu/packages/crates-io.scm (rust-csv-index-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Wilko Meyer
2023-10-16gnu: Add rust-chan-0.1....* gnu/packages/crates-io.scm (rust-chan-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Wilko Meyer
2023-10-16gnu: Add rust-filetime-0.1....* gnu/packages/crates-io.scm (rust-filetime-0.1): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il> Wilko Meyer
2023-10-16pack: Allow setting a custom image tag for Docker images...Previously, the image repository name was automatically computed from the packages in the manifest without allowing the user to set a custom one. As such, changing the packages in the manifest would result in a new image name. Thereby requiring updating documentation et cetera when using `docker load` directory on the resulting image. Inspired by `docker build -t`, this commit adds a new Docker-specific option to `guix pack` which allows setting a custom repository name for the resulting image. If this option is not specified, pack falls back to computing the name from the manifest. Therefore, this change is entirely backwards compatible. Documentation has been added with: 373ec2cf8ce97d5f89191c3d9211ee3a5c2067dc. * guix/scripts/pack.scm (guix-pack): Add --image-tag option. (%docker-format-options): New constant. (show-docker-format-options): New procedure. (show-docker-format-options/detailed): New procedure. (docker-image): Allow setting a custom repository name for the created docker image via extra-options. Signed-off-by: Sören Tempel <soeren@soeren-tempel.net> Signed-off-by: Mathieu Othacehe <othacehe@gnu.org> Sören Tempel
2023-10-15gnu: tootle: Deprecate in favor of tuba....* gnu/packages/mastodon.scm (tootle): Deprecate for tuba. * gnu/packages/patches/tootle-glib-object-renaming.patch, gnu/packages/patches/tootle-reason-phrase.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Efraim Flashner
2023-10-15etc: snippets: Do not match unintended quotes....* etc/snippets/tempel/scheme-mode (origin): Unquote ‘git-fetch’, ‘svn-fetch’, ‘hg-fetch’, ‘cvs-fetch’, and ‘bzr-fetch’. Use ‘otherwise’ instead of ‘t’. Liliana Marie Prikler
2023-10-15gnu: Add fast-downward....* gnu/packages/maths.scm (fast-downward): New variable. Liliana Marie Prikler
2023-10-15gnu: tracker-miners: Update to 3.3.2....* gnu/packages/gnome.scm (tracker-miners): Update to 3.3.2. Liliana Marie Prikler
2023-10-15gnu: Add ablorb....* gnu/packages/web.scm (ablorb): New variable. Liliana Marie Prikler
2023-10-15gnu: gash-utils: Fix build....* gnu/packages/shells.scm (gash-utils)[arguments]: Add ‘skip-failing-tests’ phase. [native-inputs]: Add autoconf and automake. Liliana Marie Prikler
2023-10-15gnu: xcb-util-errors: Fix cross-compiling....* gnu/packages/xorg.scm (xcb-util-errors)[native-inputs]: When cross-compiling add libxcb. Efraim Flashner
2023-10-15gnu: xorg-server-xwayland: Fix cross-compiling....* gnu/packages/xorg.scm (xorg-server-xwayland)[native-inputs]: When cross-compiling add pkg-config-for-build, wayland, wayland-protocols. Efraim Flashner
2023-10-15gnu: egl-wayland: Fix cross-compiling....* gnu/packages/xorg.scm (egl-wayland)[native-inputs]: When cross-compiling add pkg-config-for-build, wayland, wayland-protocols. Efraim Flashner
2023-10-15gnu: libxkbcommon: Fix cross-compiling....* gnu/packages/xdisorg.scm (libxkbcommon)[native-inputs]: When cross-compiling add pkg-config-for-build. Efraim Flashner
2023-10-15gnu: swaybg: Fix cross-compiling....* gnu/packages/wm.scm (swaybg)[inputs]: When cross-compiling add wayland-protocols. [native-inputs]: When cross-compiling add pkg-config-for-build, wayland. Efraim Flashner
2023-10-15gnu: sway: Fix cross-compiling....* gnu/packages/wm.scm (sway)[native-inputs]: When cross-compiling add pkg-config-for-build, wayland. Efraim Flashner
2023-10-15gnu: wlroots: Fix cross-compiling....* gnu/packages/wm.scm (wlroots)[arguments]: Adjust custom phases to also search for files from native-inputs. [native-inputs]: Add wayland. When cross-compiling add pkg-config-for-build. Efraim Flashner
2023-10-15gnu: poppler: Fix cross-compiling....* gnu/packages/pdf.scm (poppler)[native-inputs]: When cross-compiling add pkg-config-for-build. Efraim Flashner
2023-10-15gnu: libtirpc: Keep reference to mit-krb5 when cross-compiling....* gnu/packages/onc-roc.scm (libtirpc)[arguments]: When cross-compiling adjust the pkg-config file to retain a reference to mit-krb5. Efraim Flashner