| Age | Commit message (Expand) | Author |
|---|
| 2024-05-05 | gnu: linux-libre-6.8-gnu-revision: Update to 6.8.9....* gnu/packages/linux.scm (linux-libre-6.8-version): Update to 6.8.9.
(linux-libre-6.8-pristine-source): Update hash.
Signed-off-by: Leo Famulari <leo@famulari.name>
Change-Id: I4f8031b1db5e19e98e5f61377a45912f91d403f7
| Wilko Meyer |
| 2024-05-05 | gnu: Add mupen64plus-video-gliden64....* gnu/packages/emulators.scm (mupen64plus-video-gliden64): New variable.
Change-Id: I09782d0c793062c3fa448b5376a97a5f3356ea5c
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-ui-console: Modernize....* gnu/packages/emulators.scm (mupen64plus-ui-console)
[propagated-inputs]: Remove legacy mupen64plus-video-glide64 plugin.
[arguments]: Use gexps.
Change-Id: I33ce0ef1e7ea87b382f74aae07098bcf0e5f30e0
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-video-rice: Adjust synopsis....* gnu/packages/emulators.scm (mupen64plus-video-rice): Adjust synopsis.
Change-Id: I3708c46593a096f632d9268200c312a434525331
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-video-glide64mk2: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-video-glide64mk2): Fix synopsis.
Change-Id: I6f41e9a4b70faa0e2342a4ffc2803873a8dc8f08
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-video-glide64: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-video-glide64): Fix synopsis.
Change-Id: I0b2b4630dcf3c5dc5ee385e82c71f92694cf2abe
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-video-arachnoid: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-video-arachnoid): Fix synopsis.
Change-Id: Ic560e6780965526723907aff9d2af6c48f580508
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-rsp-z64: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-rsp-z64): Fix synopsis.
Change-Id: I97d5b8e70949f2a5198ce45b0a1fe24a089078ba
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-rsp-hle: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-rsp-hle): Fix synopsis.
Change-Id: I7235da472ecd1856fdc33ed08d92f9f05b29ba3a
| Maxim Cournoyer |
| 2024-05-05 | gnu: mupen64plus-audio-sdl: Fix synopsis....* gnu/packages/emulators.scm (mupen64plus-audio-sdl): Fix synopsis.
Change-Id: I08b2778cf625699d72d5fbab2b23d86ff06a1be0
| Maxim Cournoyer |
| 2024-05-06 | gnu: Add python-pyahocorasick....* gnu/packages/bioinformatics.scm (python-pyahocorasick): New variable.
Change-Id: I468bed450351b49cf81344a328841cd77f67cb4e
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| nafkhamdc |
| 2024-05-06 | gnu: Add r-memes....* gnu/packages/bioconductor.scm (r-memes): New variable.
Change-Id: Ibdf5173d35ef81d27da6831148e66be83f856deb
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
| nafkhamdc |
| 2024-05-05 | gnu: python-graphtools: Fix tests....* gnu/packages/graph.scm (python-graphtools)[arguments]: Add 'patch-tests
phase.
Change-Id: I5ffb4321ddd7e33e812bcb1cf67cee069b07b5f8
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-gpy: Update to 1.13.1....* gnu/packages/python-science.scm (python-gpy): Update to 1.13.1.
[source]: Remove snippet.
[build-system]: Use pyproject-build-system.
[arguments]: Remove phase 'remove-plotting-tests; add phase 'compatibility.
[native-inputs]: Remove python-nose and python-climin; add python-pytest,
python-matplotlib, and python-pods.
Change-Id: I1ed95e3ad2e8444979fd2cf272d7f3104b1bf2ec
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pygsp: Add missing input....* gnu/packages/graph.scm (python-pygsp)[native-inputs]: Add python-pytest.
Change-Id: I94cd4e160dcbecfbb491c0d101bcbeb761189876
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-paramz: Update to 0.9.6....* gnu/packages/python-science.scm (python-paramz): Update to 0.9.6.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add python-nose.
Change-Id: I62a2f7ecf600f48da74f4d233e108360a583d5ca
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pingouin: Update to 0.5.4....* gnu/packages/python-science.scm (python-pingouin): Update to 0.5.4.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'sklearn-compatibility phase;
skip one test.
Change-Id: I8d13f15558eadee0547f04bc4bb89a0fd0e0767b
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-liana-py: Update to 1.1.0....* gnu/packages/bioinformatics.scm (python-liana-py): Update to 1.1.0.
[arguments]: Adjust tests; add phase 'relax-requirements.
[propagated-inputs]: Remove python-mofax; add python-numpy.
[native-inputs]: Remove python-numpy; add python-poetry-core.
Change-Id: I279be08ac3ac73d9a724f59652f2f0d333607696
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-plotnine: Fix version string....* gnu/packages/python-science.scm (python-plotnine)[native-inputs]: Add
python-setuptools-scm.
Change-Id: I0fc2f3ad7edcdaaa5e3bf9774bc6840c8fbeb727
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-plotnine: Disable test because of harmless warning....* gnu/packages/python-science.scm (python-plotnine)[arguments]: Disable
test_save_method which prints an unexpected warning..
Change-Id: I28a20b85ee549311bed534efbf801db930419ca9
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-mapie: Disable strict tests....* gnu/packages/statistics.scm (python-mapie)[arguments]: Disable two tests.
Change-Id: I2c72f6f2d0136db5f97ba709a468a3aebd447d5d
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-scikit-learn-extra: Disable a validation test....* gnu/packages/machine-learning.scm (python-scikit-learn-extra)[arguments]:
Disable one test.
Change-Id: I1309cb6a82dee1a714ddec59aa90692ccfcd885b
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-cooltools: Update to 0.7.0....* gnu/packages/bioinformatics.scm (python-cooltools): Update to 0.7.0.
[build-system]: Use pyproject-build-system.
[arguments]: Remove.
Change-Id: I4112bf0cbc309df551087b8bb3cb1d37af7f751d
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-bioframe: Update to 0.6.4....* gnu/packages/bioinformatics.scm (python-bioframe): Update to 0.6.4.
[build-system]: Use pyproject-build-system.
[arguments]: Remove custom 'check phase; add 'pre-check phase. Use
#:test-flags to disable tests that require internet access.
[native-inputs]: Add python-hatchling.
[propagated-inputs]: Add python-pyyaml.
Change-Id: Iad1c8c6ef8f52886e398e9c4d2d384c5fce075c6
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-verde: Add missing input....* gnu/packages/geo.scm (python-verde)[native-inputs]: Add python-pytest.
Change-Id: I82b844627f27cfe60e42050bb37d092b3d9a43c1
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-statmake: Adjust tests and version checks....* gnu/packages/fontutils.scm (python-statmake)[arguments]: Disable broken
test; relax check for cattrs.
Change-Id: Ibd479743160d3591088d17635e26484e7de5250f
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-decoupler-py: Update to 1.6.0....* gnu/packages/bioinformatics.scm (python-decoupler-py): Update to 1.6.0.
[arguments]: Do not disable test_plot_volcano test.
Change-Id: I44a31d30e8a03d2d1ffd86383c8bc6db79628def
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-omnipath: Update to 1.0.8....* gnu/packages/python-web.scm (python-omnipath): Update to 1.0.8.
[arguments]: Disable tests that need internet access.
[native-inputs]: Add python-pytest-socket.
Change-Id: Ib5856a1a25835d43918d9fe565d0262dded70eed
| Ricardo Wurmus |
| 2024-05-05 | gnu: barectf: Use python-termcolor-1....* gnu/packages/instrumentation.scm (barectf)[propagated-inputs]: Use
python-termcolor-1.
Change-Id: I8284db970d3cee8988318be7f1180aa933ab461a
| Ricardo Wurmus |
| 2024-05-05 | gnu: Add python-termcolor-1....* gnu/packages/python-xyz.scm (python-termcolor-1): New variable.
Change-Id: I1aca97b6b7976cb698131c3a0be73e4798bef6d6
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-pytest-shutil: Disable a test....* gnu/packages/python-check.scm (python-pytest-shutil)[build-system]: Use
pyproject-build-system.
[arguments]: Disable test_pretty_formatter.
Change-Id: I862320feab5b3c6e375bf652deced6a631dfc575
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-cleanlab: Update to 2.6.3....* gnu/packages/machine-learning.scm (python-cleanlab): Update to 2.6.3.
[arguments]: Disable tests that require "datasets" package; add phase
'remove-datasets.
Change-Id: I6af99e3e749a10515328db4874974a3504658352
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-termcolor: Update to 2.4.0....* gnu/packages/python-xyz.scm (python-termcolor): Update to 2.4.0.
[build-system]: Use pyproject-build-system.
[arguments]: Add 'fix-pyproject build phase.
[native-inputs]: Add python-hatch-vcs, python-hatchling, python-pytest, and
python-pytest-cov.
Change-Id: I1b824ca6f125305169c3f64f00dbacbeb77d0ed0
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-hicexplorer: Update to 3.7.4....* gnu/packages/bioinformatics.scm (python-hicexplorer): Update to 3.7.4.
[source]: Remove obsolete snippet.
[arguments]: Remove obsolete phase 'scipy-compatibility.
[propagated-inputs]: Replace python-cleanlab-1 with python-cleanlab.
Change-Id: Iac9a24cc4551b7d7e1d41d1f07a6db6d620b119e
| Ricardo Wurmus |
| 2024-05-05 | gnu: snakemake-5: Patch version string....* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'patch-version.
Change-Id: I647625e9d26b2ee06274a0c5bb844ccb87035537
| Ricardo Wurmus |
| 2024-05-05 | gnu: snakemake-5: Make compatible with tabulate 0.9.0....* gnu/packages/python-xyz.scm (snakemake-5)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0b0ddafe9c2da91dbe10a584eb6fa0a3d5d62e87
| Ricardo Wurmus |
| 2024-05-05 | gnu: snakemake: Fetch from git repository....* gnu/packages/python-xyz.scm (snakemake)[source]: Fetch from git repository
to include tests.
[arguments]: Enable tests; add 'pre-check phase.
[build-system]: Use pyproject-build-system.
[native-inputs]: Add git-minimal, python-wrapper, python-pytest,
python-pandas, and python-requests-mock.
Change-Id: I32e9d36752cc91eacb8f05138d969834dbbce817
| Ricardo Wurmus |
| 2024-05-05 | gnu: snakemake-7: Make compatible with tabulate 0.9.0....* gnu/packages/python-xyz.scm (snakemake-7)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: Ie6b2a7d65bc76e3df7c3946ba4533b301f5a3610
| Ricardo Wurmus |
| 2024-05-05 | gnu: snakemake-6: Make compatible with tabulate 0.9.0....* gnu/packages/python-xyz.scm (snakemake-6)[arguments]: Add phase
'tabulate-compatibility.
Change-Id: I0471726e2000af76871e2542ed347cd1727bf0c9
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-jsonpickle: Update to 3.0.4....* gnu/packages/python-web.scm (python-jsonpickle): Update to 3.0.4.
[build-system]: Use pyproject-build-system.
[arguments]: Use test-flags; add 'pre-check phase.
[propagated-inputs]: Add python-importlib-metadata.
[native-inputs]: Add python-bson, python-ecdsa, python-feedparser,
python-pymongo, python-pytest, python-pytest-benchmark, python-pytest-cov,
python-pytest-enabler, python-setuptools, python-setuptools-scm,
python-simplejson, python-sqlalchemy, python-ujson, and tzdata-for-tests.
Change-Id: I99e41ae2652ce02b090ee2b99a7b850a19b5f353
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-imbalanced-learn: Update to 0.12.2....* gnu/packages/machine-learning.scm (python-imbalanced-learn): Update to
0.12.2.
[native-inputs]: Remove python-numpydoc.
Change-Id: I8af0017f76d5ab3a2d55a96c0ace6be22d57fb66
| Ricardo Wurmus |
| 2024-05-05 | gnu: tadbit: Add R to inputs....* gnu/packages/bioinformatics.scm (tadbit)[inputs]: Add r-minimal.
Change-Id: I4929dd89ddd27b4fcbd8b3a00b8ab8f3586945d2
| Ricardo Wurmus |
| 2024-05-05 | gnu: tadbit: Patch for compatibility with latest scipy....* gnu/packages/bioinformatics.scm (tadbit)[arguments]: Add phase
'scipy-compatibility.
Change-Id: Ib25b9cde75f0505c347c4ff470e61f06fb162839
| Ricardo Wurmus |
| 2024-05-05 | gnu: tadbit: Update to 1.0.1-2.2838129....* gnu/packages/bioinformatics.scm (tadbit): Update to 1.0.1-2.2838129.
Change-Id: I2c220ae37cd196ca508d30aefc24938cce985527
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-cooler: Update to 0.9.3....* gnu/packages/bioinformatics.scm (python-cooler): Update to 0.9.3.
Change-Id: I4b89d552a424e74f76cda0c527dc7b712b8c9f31
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-dask: Do not reference pyarrow_hotfix....* gnu/packages/python-xyz.scm (python-dask)[arguments]: Add 'patch-pyproject
phase.
Change-Id: Idd173b72b1467540c295224072f3740c7f42b0a8
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-dask: Disable some tests....* gnu/packages/python-xyz.scm (python-dask)[arguments]: Disable ORC tests and
those that fail due to differences in job id.
Change-Id: I272a77c8291b121b57b02750916f520b52185bbe
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-dask: Propagate python-dask-expr....* gnu/packages/python-xyz.scm (python-dask/bootstrap): New variable.
(python-dask)[propagated-inputs]: Add python-dask-expr.
* gnu/packages/python-science.scm (python-dask-expr)[propagated-inputs]:
Remove python-dask.
[native-inputs]: Add python-dask/bootstrap.
Change-Id: I1196641425421c7dde94c6fea8d573e78db9c402
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-umap-learn: Disable failing test....* gnu/packages/machine-learning.scm (python-umap-learn)[arguments]: Disable
one failing test.
Change-Id: Ic8f5f60f7d7bea0c24b417932daab3d54813d5fd
| Ricardo Wurmus |
| 2024-05-05 | gnu: python-umap-learn: Update to 0.5.6....* gnu/packages/machine-learning.scm (python-umap-learn): Update to 0.5.6.
Change-Id: If05cf1a9c7ad1d9fd0439bc888983608d70aea75
| Ricardo Wurmus |
