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2022-07-03gnu: sbcl-nfiles: Update to 1.0.0.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-nfiles): Update to 1.0.0.
2022-07-03gnu: abcl: Update to 1.9.0.Pierre Neidhardt
* gnu/packages/java.scm (abcl): Update to 1.9.0. * gnu/packages/patches/abcl-fix-build-xml.patch: Update for 1.9.0.
2022-07-03gnu: abcl: Fix loading of cl-* packages.Pierre Neidhardt
* gnu/packages/java.scm (abcl)[native-search-paths]: Add XDG_DATA_DIRS where to cl-* libraries get installed.
2022-07-03gnu: libfixposix: Add C_INCLUDE_PATH to the native-search-paths.Pierre Neidhardt
* gnu/packages/c.scm (libfixposix)[native-search-paths]: Add C_INCLUDE_PATH. This fixes the loading of cl-iolib among others.
2022-07-03etc: teams: Add entry for Liliana Prikler.Liliana Marie Prikler
* etc/teams.scm.in ("Liliana Marie Prikler"): New member.
2022-07-03etc: teams: Sort members lexicographically by last name.Liliana Marie Prikler
* etc/teams.scm.in: Sort members lexicographically by last name.
2022-07-03gnu: renpy: Install sdk-fonts.Liliana Marie Prikler
Without these fonts, the launcher will fail to launch. * gnu/packages/game-development.scm (renpy)[install]: Also recursively copy sdk-fonts.
2022-07-03gnu: python-renpy: Update to 8.0.0.Liliana Marie Prikler
* gnu/packages/game-development.scm (python-renpy): Update to 8.0.0. [source]: Revert back to url-fetch. Also patch module/setup.py to not refer to missing sources.
2022-07-03gnu: python-pygame-sdl2: Update to 2.1.0-for-renpy-8.0.0.Liliana Marie Prikler
* gnu/packages/game-development.scm (python-pygame-sdl2): Update to 2.1.0-for-renpy-8.0.0. [source]: Revert to url-fetch. Also add back the snippet to remove generated sources.
2022-07-03gnu: Add font-artifika.Liliana Marie Prikler
* gnu/packages/fonts.scm (font-artifika): New variable.
2022-07-03etc: Update teams.Andreas Enge
* etc/teams.scm.in: Rename maths team to science and add myself to it.
2022-07-03gnu: Add Climate Data Operators.r0man
* gnu/packages/geo.scm (cdo): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03gnu: Add python-deepdish.Antero Mejr
* gnu/packages/python-science.scm (python-deepdish): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03gnu: Add utest-h.Artyom V. Poptsov
* gnu/packages/c.scm (utest-h): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03gnu: solidity: Remove input labels.Ludovic Courtès
* gnu/packages/solidity.scm (solidity)[native-inputs]: Remove labels.
2022-07-03gnu: sbcl-fof: Also build the fof/mf subsystem.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-fof)[arguments]: Also build the fof/mf subsystem. [inputs]: Add sbcl-cl-json.
2022-07-03etc: Add teams.scm.Ricardo Wurmus
* etc/teams.scm.in: New file. * configure.ac: Generate executable. * .gitignore: Ignore generated file.
2022-07-03services: Add anonip-service-type.Ricardo Wurmus
* gnu/services/web.scm (anonip-configuration): New record type. (anonip-configuration?, anonip-configuration-anonip, anonip-configuration-input, anonip-configuration-output, anonip-configuration-skip-private?, anonip-configuration-column, anonip-configuration-replacement, anonip-configuration-ipv4mask, anonip-configuration-ipv6mask, anonip-configuration-increment, anonip-configuration-delimiter, anonip-configuration-regex): New procedures. (anonip-service-type): New service type. * doc/guix.texi (Log Rotation): Add subheading for Anonip Service.
2022-07-03gnu: sbcl: Disable SB-SIMD module.Guillaume Le Vaillant
SB-SIMD gets enabled only on x86_64 CPUs supporting AVX2 instructions, and some x86_64 CPUs don't. Fixes <https://issues.guix.gnu.org/56353>. Reported by Wensheng Xie <xiewensheng@hotmail.com>. * gnu/packages/lisp.scm (sbcl)[arguments]: Disable SB-SIMD in the 'build' and 'build-doc' phases.
2022-07-03gnu: nim: Update to 1.6.6.Trevor Richards
* gnu/packages/nim.scm (nim): Updated to 1.6.6. Signed-off-by: Christopher Baines <mail@cbaines.net>
2022-07-03gnu: propeller-binutils: Remove source patches.Christopher Baines
None of the patches seem to apply. The patches that are not used with binutils are probably too new for the specific commit used here, and the patches that were once applied have probably been removed, so just don't apply any patches. * gnu/packages/embedded.scm (propeller-binutils)[source]: Remove patches that don't apply.
2022-07-03gnu: java-xpp3: Download source from ci.guix.gnu.org.Christopher Baines
The www.extreme.indiana.edu site is now serving a redirect: This site has been deprecated. You can access an archive of this site at https://web.archive.org/web/20210225153105/https://www.extreme.indiana.edu/. Because this isn't a 404, as it probably should be, guix follows this redirect and gets some content that isn't the file it asked for. To avoid this incorrect behaviour, switch to using a ci.guix.gnu.org URL for the file instead. * gnu/packages/xml.scm (java-xpp3)[source]: Switch the uri to ci.guix.gnu.org.
2022-07-03gnu: curl: Skip failing test on 32-bit architectures.Efraim Flashner
* gnu/packages/curl.scm (curl-7.84.0)[arguments]: Use custom 'skip-failing-tests phase on all 32-bit architectures.
2022-07-03gnu: curl: Fix build on some systems.Efraim Flashner
* gnu/packages/curl.scm (curl-7.84.0)[source]: Add patch to work around implicit function declaration. * gnu/packages/patches/curl-easy-lock.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-07-03gnu: Add sqls 0.2.18.muradm
* gnu/packages/databases (sqls): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03gnu: Add go-github-com-sourcegraph-jsonrpc2 0.1.0.muradm
* gnu/packages/golang.scm (go-github-com-sourcegraph-jsonrpc2): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03gnu: Add go-github-com-gorilla-websocket 1.5.0.muradm
* gnu/packages/golang.scm (go-github-com-gorilla-websocket): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-07-03challenge: Do nothing when passed zero arguments.Ludovic Courtès
Previously, 'guix challenge' without arguments would list live store items that had been locally built. This was deemed confusing, especially since 'list-live' is an expensive operation. * guix/scripts/challenge.scm (guix-challenge): Warn and exit with 0 when FILES is empty. * doc/guix.texi (Invoking guix challenge): Update accordingly.
2022-07-02gnu: r-ifultools: Patch in removed macros to fix build.Ricardo Wurmus
* gnu/packages/cran.scm (r-ifultools)[arguments]: Define removed compatibility macros.
2022-07-02gnu: r-with-tests: Update to 4.2.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.1.
2022-07-02gnu: r-tcgabiolinks: Update to 2.24.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): Update to 2.24.3.
2022-07-02gnu: r-bionetstat: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bionetstat): Update to 1.16.1.
2022-07-02gnu: r-bgeedb: Update to 2.22.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bgeedb): Update to 2.22.3.
2022-07-02gnu: r-ggbio: Update to 1.44.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggbio): Update to 1.44.1.
2022-07-02gnu: r-rsubread: Update to 2.10.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.10.4.
2022-07-02gnu: r-biosigner: Update to 1.24.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biosigner): Update to 1.24.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-ropls: Update to 1.28.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.28.2. [propagated-inputs]: Add r-multiassayexperiment and r-summarizedexperiment.
2022-07-02gnu: r-genomicscores: Update to 2.8.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicscores): Update to 2.8.2. [propagated-inputs]: Add r-httr.
2022-07-02gnu: r-clusterprofiler: Update to 4.4.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.4.4.
2022-07-02gnu: r-batchelor: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.12.3.
2022-07-02gnu: r-matrixgenerics: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.8.1.
2022-07-02gnu: r-zellkonverter: Update to 1.6.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-zellkonverter): Update to 1.6.3.
2022-07-02gnu: r-simplifyenrichment: Update to 1.6.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-simplifyenrichment): Update to 1.6.1.
2022-07-02gnu: r-rtracklayer: Update to 1.56.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.56.1.
2022-07-02gnu: r-organismdbi: Update to 1.38.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-organismdbi): Update to 1.38.1.
2022-07-02gnu: r-limma: Update to 3.52.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-limma): Update to 3.52.2.
2022-07-02gnu: r-ensembldb: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.20.2.
2022-07-02gnu: r-gld: Update to 2.6.5.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gld): Update to 2.6.5.
2022-07-02gnu: r-clubsandwich: Update to 0.5.7.Ricardo Wurmus
* gnu/packages/statistics.scm (r-clubsandwich): Update to 0.5.7.
2022-07-02gnu: r-ranger: Update to 0.14.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-ranger): Update to 0.14.1.
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