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2016-01-15gnu: Update python-tzlocal to 1.2.Leo Famulari
* gnu/packages/python.scm (python-tzlocal): Update to 1.2. [source]: Use pypi-uri. [arguments]: Remove the custom 'unpack phase. [native-inputs]: Remove unzip, python-setuptools. [propagated-inputs]: Add python-pytz.
2016-01-15gnu: Add python-sphinxcontrib-newsfeed.Leo Famulari
* gnu/packages/python.scm (python-sphinxcontrib-newsfeed): New variable.
2016-01-15gnu: Add python-icalendar.Leo Famulari
* gnu/packages/python.scm (python-icalendar): New variable.
2016-01-15gnu: Add vdirsyncer.Leo Famulari
* gnu/packages/dav.scm (vdirsyncer): New variable.
2016-01-15gnu: Add radicale.Leo Famulari
* gnu/packages/dav.scm (radicale): New file. * gnu-system.am (GNU_SYSTEM_MODULES): Add it.
2016-01-15gnu: Add python-pytest-xprocess.Leo Famulari
* gnu/packages/python.scm (python-pytest-xprocess): New variable.
2016-01-15gnu: Add python-wsgi-intercept.Leo Famulari
* gnu/packages/python.scm (python-wsgi-intercept): New variable.
2016-01-15gnu: Add python-pytest-localserver.Leo Famulari
* gnu/packages/python.scm (python-pytest-localserver): New variable.
2016-01-15gnu: Add python-pytest-cache.Leo Famulari
* gnu/packages/python.scm (python-pytest-cache): New variable.
2016-01-15gnu: Add python-execnet.Leo Famulari
* gnu/packages/python.scm (python-execnet): New variable.
2016-01-15gnu: Add python-apipkg.Leo Famulari
* gnu/packages/python.scm (python-apipkg): New variable.
2016-01-15gnu: Add python-click-log.Leo Famulari
* gnu/packages/python.scm (python-click-log): New variable.
2016-01-15gnu: Add python-click-threading.Leo Famulari
* gnu/packages/python.scm (python-click-threading): New variable.
2016-01-15gnu: Add python-requests-toolbelt.Leo Famulari
* gnu/packages/python.scm (python-requests-toolbelt): New variable.
2016-01-15gnu: Add python-atomicwrites.Leo Famulari
* gnu/packages/python.scm (python-atomicwrites): New variable.
2016-01-15gnu: glade: Update to 3.18.5.Ricardo Wurmus
* gnu/packages/gnome.scm (glade): Update to 3.18.5. [arguments]: Disable tests; add "fix-docbook" phase. [inputs]: Replace "gtk+-2" with "gtk+". [native-inputs]: Add "itstool", "libxslt", "docbook-xml", "docbook-xsl"; replace "python" with "python-2".
2016-01-15gnu: openssh: Update to 7.1p2.Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-15Revert "gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778]."Mark H Weaver
This reverts commit 6d139e53b596ca154800d154b37fcd22741c629c.
2016-01-14gnu: openssh: Update to 7.1p2 [fixes CVE-0216-0778].Mark H Weaver
* gnu/packages/ssh.scm (openssh): Update to 7.1p2.
2016-01-14gnu: Add docker-compose.David Thompson
* gnu/packages/docker.scm (docker-compose): New variable.
2016-01-14gnu: Add python-dockerpty.David Thompson
* gnu/packages/docker.scm (python-dockerpty): New variable.
2016-01-14gnu: Add python-docker-py.David Thompson
* gnu/packages/docker.scm: New file. * Makefile.am (GNU_SYSTEM_MODULES): Add it.
2016-01-14gnu: Add python-websocket-client.David Thompson
* gnu/packages/python.scm (python-websocket-client): New variable.
2016-01-14gnu: Add python-texttable.David Thompson
* gnu/packages/python.scm (python-texttable, python2-texttable): New variables.
2016-01-14gnu: Update python-jsonschema to 2.5.1.David Thompson
* gnu/packages/python.scm (python-jsonschema): Update to 2.5.1. [inputs]: Add python-vcversioner.
2016-01-14gnu: Add python-vcversioner.David Thompson
* gnu/packages/python.scm (python-vcversioner, python2-vcversioner): New variables.
2016-01-14gnu: Add version 2.7 variant of python-requests.David Thompson
* gnu/packages/python.scm (python-requests-2.7): New variable.
2016-01-14gnu: r-go-db: Add missing input.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-go-db)[propagated-inputs]: Add "r-annotationdbi".
2016-01-14gnu: r-sparsem: Add missing "gfortran" input.Ricardo Wurmus
* gnu/packages/statistics.scm (r-sparsem)[inputs]: Add "gfortran".
2016-01-14gnu: bowtie: Update to 2.2.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bowtie): Update to 2.2.6. [source]: Remove patch; do not set CC and CPP variables. [inputs]: Add "tbb". [arguments]: Pass "prefix" and "WITH_TBB" make flags; remove custom "install" phase. * gnu/packages/patches/bowtie-fix-makefile.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove patch file.
2016-01-14gnu: gnupg: Add TOFU support.Efraim Flashner
* gnu/packages/gnupg.scm (gnupg)[inputs]: Add sqlite.
2016-01-14import: gem: Beautify description field.Ben Woodcroft
* guix/import/gem.scm (gem->guix-package): Use 'beautify-description'.
2016-01-14import: cran: Move beautify-description to utils module.Ben Woodcroft
* guix/import/cran.scm (beautify-description): Move from here... * guix/import/utils.scm: ... to here.
2016-01-14emacs: Fix heading face in "Package Info".Alex Kost
Reported by Ludovic Courtès <ludo@gnu.org> on #guix. This fixes a regression introduced in commit 7171d824. 'insert-text-button' procedure does not allow to override a button face, so a specialized button type should be used instead. * emacs/guix-ui-package.el (guix-package-heading): New button type. (guix-package-info-insert-heading): Use it.
2016-01-14gnu: orfm: Update to 0.5.3.Ben Woodcroft
* gnu/packages/bioinformatics.scm (orfm): Update to 0.5.3. [native-inputs]: Add inputs required for tests. [description]: Add commas.
2016-01-14gnu: Add ruby-bio-commandeer.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-bio-commandeer): New variable.
2016-01-14gnu: Add ruby-systemu.Ben Woodcroft
* gnu/packages/ruby.scm (ruby-systemu): New variable.
2016-01-13hydra: Add missing phase and inputs for 'make dist' job.Ludovic Courtès
* build-aux/hydra/guix.scm (tarball-package): Inherit from 'guix-devel' rather than 'guix'. Pass #:phases to 'dist-package'.
2016-01-13build-system/gnu: 'dist-package' can be passed the phases.Ludovic Courtès
* guix/build-system/gnu.scm (dist-package): Add #:phases parameter and honor it.
2016-01-13monad-repl: Close connection when leaving the monad REPL.Ludovic Courtès
* guix/monad-repl.scm (store-monad-language): Add 'store' parameter and use it. Remove call to 'open-connection'. (enter-store-monad): Use 'with-store' and pass the store to 'store-monad-language.
2016-01-13gnu: julia: Update to 0.4.3.Ricardo Wurmus
* gnu/packages/julia.scm (julia): Update to 0.4.3. (libuv-julia): Update to 07730c4bd595.
2016-01-13emacs: Move loading packages to "guix-emacs.el".Alex Kost
* emacs/guix-init.el: Move the code for auto-loading Emacs packages to... (guix-package-enable-at-startup): Move to... * emacs/guix-emacs.el (guix-package-enable-at-startup): ... here.
2016-01-13emacs: Make "guix-emacs.el" independent.Alex Kost
"guix-emacs.el" may be used just for "instructing" Emacs where to find Emacs packages installed with Guix, so it should have as few dependencies as possible. See <http://lists.gnu.org/archive/html/guix-devel/2016-01/msg00022.html>. * emacs/guix-emacs.el: Require 'guix-profiles' optionally. (guix-emacs-load-autoloads): Use 'guix-profile-prompt' only if it is available.
2016-01-13emacs: Complete --file in 'guix build' popup.Alex Kost
* emacs/guix-command.el (guix-command-improve-build-argument): Use 'guix-read-file-name' to complete --file option.
2016-01-13emacs: Add missing shell completions.Alex Kost
* emacs/guix-pcomplete.el (guix-pcomplete-complete-option-arg): Complete file name for '--install-from-file' option of 'guix package' command, and for '--file' and '--with-source' options of 'guix build' command.
2016-01-13gnu: isc-dhcp: Update to 4.3.3-P1 [fixes CVE-2015-8605].Mark H Weaver
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.3-P1.
2016-01-13gnu: samtools: Update to 1.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): Update to 1.3. [arguments]: Enable tests for all architectures; set ncurses in configure-flags instead of make-flags; simplify "patch-tests" phase; restore "configure" phase.
2016-01-13build: Use 127 as the Linux hash-bang limit.Ludovic Courtès
Reported by taylanbayirli@gmail.com (Taylan Ulrich Bayırlı/Kammer). * m4/guix.m4 (LINUX_HASH_BANG_LIMIT): Set to 127.
2016-01-13gnu: skribilo: Update to 0.9.3.Ludovic Courtès
* gnu/packages/skribilo.scm (skribilo): Update to 0.9.3. [native-inputs]: New field.
2016-01-12doc: Fix typo in "Build Systems".Leo Famulari
* doc/guix.texi (Build Systems): Remove extra 's'.
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